Propagation of KdgR regulog to Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433
| Source regulog: | KdgR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 |
| Orthologous TF(s) | Sententeric_010100025161 |
| Regulated genes | 6 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -34
Score: 5.8 Sequence: AAATAAAACATTATTTTAATT
Locus tag: Sententeric_010100013393
|
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| Sententeric_010100013393 | -34 | 5.8 | AAATAAAACATTATTTTAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgX | ||||
| Ortholog function: predicted 2-keto-3-deoxygluconate permease | ||||
| Salmonella typhimurium LT2 | STM4395 | -34 | 5.8 | AAATAAAACATTATTTTAATT |
| Citrobacter koseri ATCC BAA-895 | CKO_03627 | -31 | 5.2 | AAATAAAACATTATTTCAAAG |
| Enterobacter sp. 638 | Ent638_0375 | -33 | 5.9 | AATTGAAACGTCATTTTATTT |
| Yersinia pestis KIM | y1734 | -22 | 5.8 | TAACGAAACATCATTTCATTT |
|
Position: -32
Score: 5.7 Sequence: AAATAAAACGCTGTTTTAACT
Locus tag: Sententeric_010100013703
|
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| Sententeric_010100013703 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjgK | ||||
| Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
| Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
| Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
| Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
| Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |
|
Position: -126
Score: 4.7 Sequence: ATGTGAAACAGGGTTTCAAAA
Locus tag: Sententeric_010100015346
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| Sententeric_010100015346 | -126 | 4.7 | ATGTGAAACAGGGTTTCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhiA | ||||
| Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit | ||||
| Salmonella typhimurium LT2 | STM4054 | -126 | 4.7 | ATGTGAAACAGGGTTTCAAAA |
|
Position: -108
Score: 5.8 Sequence: TAATGAAACTTCGTTTCATTA
Locus tag: Sententeric_010100017656
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| Sententeric_010100017656 | -108 | 5.8 | TAATGAAACTTCGTTTCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spiX | ||||
| Ortholog function: predicted 5-keto-4-deoxyuronate isomerase | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1742 | -54 | 5.1 | AATTGAAATACAGTTTTAAAA |
|
Position: -131
Score: 4.9 Sequence: AAATGAAACACACTTTTCATT
Locus tag: Sententeric_010100022934
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| Sententeric_010100022934 | -131 | 4.9 | AAATGAAACACACTTTTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppsR | ||||
| Ortholog function: PEP synthetase regulatory protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1703 | -131 | 5.3 | AAATGAAATGCTGTTTTCATA |
| Salmonella typhimurium LT2 | STM1348 | -131 | 4.9 | AAATGAAACACACTTTTCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01727 | -107 | 5.5 | TATAAAAATAGCGTTTCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02161 | -97 | 5.1 | AACAAAAATAGCGTTTCAATT |
| Enterobacter sp. 638 | Ent638_1744 | -107 | 5.3 | ATTAAAAACACCATTTCATTT |
| Serratia proteamaculans 568 | Spro_2173 | -134 | 5.2 | ATTTGAAATAGTGTTTTACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1852 | -94 | 5.6 | TAATGAAATGGCGTTTTAATA |