Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LiuR regulog to Ralstonia pickettii 12J

Reference regulog properties
Source regulog: LiuR - Ralstonia
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode:
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia pickettii 12J
Orthologous TF(s) Rpic_0130
Regulated genes 6
Built upon 57 sites [see more]
Predicted regulatory interactions in Ralstonia pickettii 12J
Locus tag Position Score Sequence
Position: -118
Score: 4.8
Sequence: GTTGACGAGTGCGTCAAC
Locus tag: Rpic_0089
Rpic_0089 -118 4.8 GTTGACGAGTGCGTCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mcm
Ortholog function: Methylmalonyl-CoA mutase (EC 5.4.99.2)
Ralstonia solanacearum GMI1000 RS00669 -113 6.6 GTTGACGTTTACGTAAAC
Ralstonia pickettii 12J Rpic_0089 -118 4.8 GTTGACGAGTGCGTCAAC
Ralstonia metallidurans CH34 Rmet_0210 -104 5.7 CCTTACGTTAACGTAAAC
-98 4.5 GTTAACGTAAACGTCATA
Ralstonia eutropha H16 H16_A0280 -139 6 CTTTACGTTAACGTCAAC
-133 4.2 GTTAACGTCAACGTCATA
Cupriavidus taiwanensis RALTA_A0218 -136 6.1 ATTTACGTTAACGTCAAC
-130 4.2 GTTAACGTCAACGTCATA
Position: -41
Score: 5.7
Sequence: CTTGACGTATACGTCAAT
Locus tag: Rpic_0115
Rpic_0115 -41 5.7 CTTGACGTATACGTCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Ralstonia solanacearum GMI1000 RS00697 -34 6 CTTGACGTATACGTCAAC
Ralstonia pickettii 12J Rpic_0115 -41 5.7 CTTGACGTATACGTCAAT
Position: -150
Score: 6.6
Sequence: ATTGACGTTTACGTAAAC
Locus tag: Rpic_0129
Rpic_0129 -150 6.6 ATTGACGTTTACGTAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuA
Ortholog function: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Ralstonia solanacearum GMI1000 RS03246 -137 6.6 GTTGACGTTTACGTAAAC
-131 5.3 GTTTACGTAAACGTCAAT
Ralstonia pickettii 12J Rpic_0129 -150 6.6 ATTGACGTTTACGTAAAC
-144 5.3 GTTTACGTAAACGTCAAT
Ralstonia metallidurans CH34 Rmet_0103 -87 6.6 ATTGACGTTTACGTAAAC
-81 5.3 GTTTACGTAAACGTCAAT
Ralstonia eutropha JMP134 Reut_A0135 -58 6.6 ATTGACGTTTACGTAAAC
-52 5.3 GTTTACGTAAACGTCAAT
Ralstonia eutropha H16 H16_A0167 -93 6.6 ATTGACGTTTACGTAAAC
-87 5.3 GTTTACGTAAACGTCAAT
Cupriavidus taiwanensis RALTA_A0110 -90 6.6 ATTGACGTTTACGTAAAC
-84 5.5 GTTTACGTAAACGTAAAT
Position: -117
Score: 6.4
Sequence: ATTGACGCTAACGTAAAC
Locus tag: Rpic_0130
Rpic_0130 -117 6.4 ATTGACGCTAACGTAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuR
Ortholog function: Transcriptional regulator, MerR family
Ralstonia solanacearum GMI1000 RS03247 -107 6.1 TTTGACGCTAACGTAAAC
-101 4.8 GCTAACGTAAACGTCAAT
Ralstonia pickettii 12J Rpic_0130 -117 6.4 ATTGACGCTAACGTAAAC
-111 4.8 GCTAACGTAAACGTCAAT
Ralstonia metallidurans CH34 Rmet_0102 -100 6.2 CTTGACGCTAACGTTAAC
-94 5.1 GCTAACGTTAACGTCAAT
Ralstonia eutropha JMP134 Reut_A0133 -99 6.4 GTTGACGCTAACGTAAAC
-93 5.1 GCTAACGTAAACGTCAAC
Ralstonia eutropha H16 H16_A0165 -99 6.4 GTTGACGCTAACGTAAAC
-93 4.8 GCTAACGTAAACGTCAAT
Cupriavidus taiwanensis RALTA_A0108 -98 6.4 GTTGACGCTAACGTAAAC
-92 5.1 GCTAACGTAAACGTCAAC
Position: -91
Score: 6.3
Sequence: ATTGACGTTTACGTTAGC
Locus tag: Rpic_0131
Rpic_0131 -91 6.3 ATTGACGTTTACGTTAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: RSc0281
Ortholog function: Metallo-beta-lactamase family protein
Ralstonia solanacearum GMI1000 RS03248 -77 6.3 ATTGACGTTTACGTTAGC
-71 4.9 GTTTACGTTAGCGTCAAA
Ralstonia pickettii 12J Rpic_0131 -91 6.3 ATTGACGTTTACGTTAGC
-85 5.1 GTTTACGTTAGCGTCAAT
Ralstonia metallidurans CH34 Rmet_0101 -56 6.2 ATTGACGTTAACGTTAGC
-50 4.8 GTTAACGTTAGCGTCAAG
Ralstonia eutropha JMP134 Reut_A0132 -155 6.2 GTTGACGTTTACGTTAGC
-149 5.5 GTTTACGTTAGCGTCAAC
Ralstonia eutropha H16 H16_A0164 -130 6.3 ATTGACGTTTACGTTAGC
-124 5.5 GTTTACGTTAGCGTCAAC
Cupriavidus taiwanensis RALTA_A0107 -132 6.2 GTTGACGTTTACGTTAGC
-126 5.5 GTTTACGTTAGCGTCAAC
Position: -56
Score: 5.9
Sequence: CTTGACGCGAACGTAAAC
Locus tag: Rpic_2811
Rpic_2811 -56 5.9 CTTGACGCGAACGTAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaH
Ortholog function: 3-hydroxyacyl-CoA dehydrogenase
Ralstonia solanacearum GMI1000 RS05766 -53 5.2 TATGACGTTGACGTAAAC
-47 5.7 GTTGACGTAAACGTCAAT
Ralstonia pickettii 12J Rpic_2811 -56 5.9 CTTGACGCGAACGTAAAC
-50 4 GCGAACGTAAACGTCAAG
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