Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LiuR regulog to Ralstonia metallidurans CH34

Reference regulog properties
Source regulog: LiuR - Ralstonia
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode:
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Propagated regulon:
Target genome Ralstonia metallidurans CH34
Orthologous TF(s) Rmet_0102
Regulated genes 5
Built upon 57 sites [see more]
Predicted regulatory interactions in Ralstonia metallidurans CH34
Locus tag Position Score Sequence
Position: -56
Score: 6.2
Sequence: ATTGACGTTAACGTTAGC
Locus tag: Rmet_0101
Rmet_0101 -56 6.2 ATTGACGTTAACGTTAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: RSc0281
Ortholog function: Metallo-beta-lactamase family protein
Ralstonia solanacearum GMI1000 RS03248 -77 6.3 ATTGACGTTTACGTTAGC
-71 4.9 GTTTACGTTAGCGTCAAA
Ralstonia pickettii 12J Rpic_0131 -91 6.3 ATTGACGTTTACGTTAGC
-85 5.1 GTTTACGTTAGCGTCAAT
Ralstonia metallidurans CH34 Rmet_0101 -56 6.2 ATTGACGTTAACGTTAGC
-50 4.8 GTTAACGTTAGCGTCAAG
Ralstonia eutropha JMP134 Reut_A0132 -155 6.2 GTTGACGTTTACGTTAGC
-149 5.5 GTTTACGTTAGCGTCAAC
Ralstonia eutropha H16 H16_A0164 -130 6.3 ATTGACGTTTACGTTAGC
-124 5.5 GTTTACGTTAGCGTCAAC
Cupriavidus taiwanensis RALTA_A0107 -132 6.2 GTTGACGTTTACGTTAGC
-126 5.5 GTTTACGTTAGCGTCAAC
Position: -100
Score: 6.2
Sequence: CTTGACGCTAACGTTAAC
Locus tag: Rmet_0102
Rmet_0102 -100 6.2 CTTGACGCTAACGTTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuR
Ortholog function: Transcriptional regulator, MerR family
Ralstonia solanacearum GMI1000 RS03247 -107 6.1 TTTGACGCTAACGTAAAC
-101 4.8 GCTAACGTAAACGTCAAT
Ralstonia pickettii 12J Rpic_0130 -117 6.4 ATTGACGCTAACGTAAAC
-111 4.8 GCTAACGTAAACGTCAAT
Ralstonia metallidurans CH34 Rmet_0102 -100 6.2 CTTGACGCTAACGTTAAC
-94 5.1 GCTAACGTTAACGTCAAT
Ralstonia eutropha JMP134 Reut_A0133 -99 6.4 GTTGACGCTAACGTAAAC
-93 5.1 GCTAACGTAAACGTCAAC
Ralstonia eutropha H16 H16_A0165 -99 6.4 GTTGACGCTAACGTAAAC
-93 4.8 GCTAACGTAAACGTCAAT
Cupriavidus taiwanensis RALTA_A0108 -98 6.4 GTTGACGCTAACGTAAAC
-92 5.1 GCTAACGTAAACGTCAAC
Position: -87
Score: 6.6
Sequence: ATTGACGTTTACGTAAAC
Locus tag: Rmet_0103
Rmet_0103 -87 6.6 ATTGACGTTTACGTAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuA
Ortholog function: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2)
Ralstonia solanacearum GMI1000 RS03246 -137 6.6 GTTGACGTTTACGTAAAC
-131 5.3 GTTTACGTAAACGTCAAT
Ralstonia pickettii 12J Rpic_0129 -150 6.6 ATTGACGTTTACGTAAAC
-144 5.3 GTTTACGTAAACGTCAAT
Ralstonia metallidurans CH34 Rmet_0103 -87 6.6 ATTGACGTTTACGTAAAC
-81 5.3 GTTTACGTAAACGTCAAT
Ralstonia eutropha JMP134 Reut_A0135 -58 6.6 ATTGACGTTTACGTAAAC
-52 5.3 GTTTACGTAAACGTCAAT
Ralstonia eutropha H16 H16_A0167 -93 6.6 ATTGACGTTTACGTAAAC
-87 5.3 GTTTACGTAAACGTCAAT
Cupriavidus taiwanensis RALTA_A0110 -90 6.6 ATTGACGTTTACGTAAAC
-84 5.5 GTTTACGTAAACGTAAAT
Position: -104
Score: 5.7
Sequence: CCTTACGTTAACGTAAAC
Locus tag: Rmet_0210
Rmet_0210 -104 5.7 CCTTACGTTAACGTAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mcm
Ortholog function: Methylmalonyl-CoA mutase (EC 5.4.99.2)
Ralstonia solanacearum GMI1000 RS00669 -113 6.6 GTTGACGTTTACGTAAAC
Ralstonia pickettii 12J Rpic_0089 -118 4.8 GTTGACGAGTGCGTCAAC
Ralstonia metallidurans CH34 Rmet_0210 -104 5.7 CCTTACGTTAACGTAAAC
-98 4.5 GTTAACGTAAACGTCATA
Ralstonia eutropha H16 H16_A0280 -139 6 CTTTACGTTAACGTCAAC
-133 4.2 GTTAACGTCAACGTCATA
Cupriavidus taiwanensis RALTA_A0218 -136 6.1 ATTTACGTTAACGTCAAC
-130 4.2 GTTAACGTCAACGTCATA
Position: -44
Score: 6.6
Sequence: ATTGACGTTAACGTAAAC
Locus tag: Rmet_0531
Rmet_0531 -44 6.6 ATTGACGTTAACGTAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaH
Ortholog function: 3-hydroxyacyl-CoA dehydrogenase
Ralstonia metallidurans CH34 Rmet_0531 -44 6.6 ATTGACGTTAACGTAAAC
Ralstonia eutropha JMP134 Reut_A0589 -56 6.6 GTTGACGTTTACGTAAAC
-50 4.5 GTTTACGTAAACGGCAGT
Ralstonia eutropha H16 H16_A0602 -53 6.6 ATTGACGTTTACGTAAAC
-47 5.1 GTTTACGTAAACGGCAAC
Cupriavidus taiwanensis RALTA_A0558 -44 6.1 CTTAACGTTTACGTAAAC
-38 5.3 GTTTACGTAAACGGAAAC
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