Propagation of LiuR regulog to Ralstonia pickettii 12D
| Source regulog: | LiuR - Ralstonia |
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/beta |
| Propagated regulon: | |
| Target genome | Ralstonia pickettii 12D |
| Orthologous TF(s) | Rpic12D_0138 |
| Regulated genes | 5 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -41
Score: 5.7 Sequence: CTTGACGTATACGTCAAT
Locus tag: Rpic12D_0122
|
||||
| Rpic12D_0122 | -41 | 5.7 | CTTGACGTATACGTCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: serA | ||||
| Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) | ||||
| Ralstonia solanacearum GMI1000 | RS00697 | -34 | 6 | CTTGACGTATACGTCAAC |
| Ralstonia pickettii 12J | Rpic_0115 | -41 | 5.7 | CTTGACGTATACGTCAAT |
|
Position: -150
Score: 6.6 Sequence: ATTGACGTTTACGTAAAC
Locus tag: Rpic12D_0137
|
||||
| Rpic12D_0137 | -150 | 6.6 | ATTGACGTTTACGTAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: liuA | ||||
| Ortholog function: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Butyryl-CoA dehydrogenase (EC 1.3.99.2) | ||||
| Ralstonia solanacearum GMI1000 | RS03246 | -137 | 6.6 | GTTGACGTTTACGTAAAC |
| -131 | 5.3 | GTTTACGTAAACGTCAAT | ||
| Ralstonia pickettii 12J | Rpic_0129 | -150 | 6.6 | ATTGACGTTTACGTAAAC |
| -144 | 5.3 | GTTTACGTAAACGTCAAT | ||
| Ralstonia metallidurans CH34 | Rmet_0103 | -87 | 6.6 | ATTGACGTTTACGTAAAC |
| -81 | 5.3 | GTTTACGTAAACGTCAAT | ||
| Ralstonia eutropha JMP134 | Reut_A0135 | -58 | 6.6 | ATTGACGTTTACGTAAAC |
| -52 | 5.3 | GTTTACGTAAACGTCAAT | ||
| Ralstonia eutropha H16 | H16_A0167 | -93 | 6.6 | ATTGACGTTTACGTAAAC |
| -87 | 5.3 | GTTTACGTAAACGTCAAT | ||
| Cupriavidus taiwanensis | RALTA_A0110 | -90 | 6.6 | ATTGACGTTTACGTAAAC |
| -84 | 5.5 | GTTTACGTAAACGTAAAT | ||
|
Position: -117
Score: 6.4 Sequence: ATTGACGCTAACGTAAAC
Locus tag: Rpic12D_0138
|
||||
| Rpic12D_0138 | -117 | 6.4 | ATTGACGCTAACGTAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: liuR | ||||
| Ortholog function: Transcriptional regulator, MerR family | ||||
| Ralstonia solanacearum GMI1000 | RS03247 | -107 | 6.1 | TTTGACGCTAACGTAAAC |
| -101 | 4.8 | GCTAACGTAAACGTCAAT | ||
| Ralstonia pickettii 12J | Rpic_0130 | -117 | 6.4 | ATTGACGCTAACGTAAAC |
| -111 | 4.8 | GCTAACGTAAACGTCAAT | ||
| Ralstonia metallidurans CH34 | Rmet_0102 | -100 | 6.2 | CTTGACGCTAACGTTAAC |
| -94 | 5.1 | GCTAACGTTAACGTCAAT | ||
| Ralstonia eutropha JMP134 | Reut_A0133 | -99 | 6.4 | GTTGACGCTAACGTAAAC |
| -93 | 5.1 | GCTAACGTAAACGTCAAC | ||
| Ralstonia eutropha H16 | H16_A0165 | -99 | 6.4 | GTTGACGCTAACGTAAAC |
| -93 | 4.8 | GCTAACGTAAACGTCAAT | ||
| Cupriavidus taiwanensis | RALTA_A0108 | -98 | 6.4 | GTTGACGCTAACGTAAAC |
| -92 | 5.1 | GCTAACGTAAACGTCAAC | ||
|
Position: -91
Score: 6.3 Sequence: ATTGACGTTTACGTTAGC
Locus tag: Rpic12D_0139
|
||||
| Rpic12D_0139 | -91 | 6.3 | ATTGACGTTTACGTTAGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: RSc0281 | ||||
| Ortholog function: Metallo-beta-lactamase family protein | ||||
| Ralstonia solanacearum GMI1000 | RS03248 | -77 | 6.3 | ATTGACGTTTACGTTAGC |
| -71 | 4.9 | GTTTACGTTAGCGTCAAA | ||
| Ralstonia pickettii 12J | Rpic_0131 | -91 | 6.3 | ATTGACGTTTACGTTAGC |
| -85 | 5.1 | GTTTACGTTAGCGTCAAT | ||
| Ralstonia metallidurans CH34 | Rmet_0101 | -56 | 6.2 | ATTGACGTTAACGTTAGC |
| -50 | 4.8 | GTTAACGTTAGCGTCAAG | ||
| Ralstonia eutropha JMP134 | Reut_A0132 | -155 | 6.2 | GTTGACGTTTACGTTAGC |
| -149 | 5.5 | GTTTACGTTAGCGTCAAC | ||
| Ralstonia eutropha H16 | H16_A0164 | -130 | 6.3 | ATTGACGTTTACGTTAGC |
| -124 | 5.5 | GTTTACGTTAGCGTCAAC | ||
| Cupriavidus taiwanensis | RALTA_A0107 | -132 | 6.2 | GTTGACGTTTACGTTAGC |
| -126 | 5.5 | GTTTACGTTAGCGTCAAC | ||
|
Position: -56
Score: 5.9 Sequence: CTTGACGCGAACGTAAAC
Locus tag: Rpic12D_2405
|
||||
| Rpic12D_2405 | -56 | 5.9 | CTTGACGCGAACGTAAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: paaH | ||||
| Ortholog function: 3-hydroxyacyl-CoA dehydrogenase | ||||
| Ralstonia solanacearum GMI1000 | RS05766 | -53 | 5.2 | TATGACGTTGACGTAAAC |
| -47 | 5.7 | GTTGACGTAAACGTCAAT | ||
| Ralstonia pickettii 12J | Rpic_2811 | -56 | 5.9 | CTTGACGCGAACGTAAAC |
| -50 | 4 | GCGAACGTAAACGTCAAG | ||