Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PerR regulog to Staphylococcus carnosus subsp. carnosus TM300

Reference regulog properties
Source regulog: PerR - Staphylococcaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Oxidative stress response
Effector: Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+)
Phylum: Firmicutes
Propagated regulon:
Target genome Staphylococcus carnosus subsp. carnosus TM300
Orthologous TF(s) Sca_1434
Regulated genes 7
Built upon 69 sites [see more]
Predicted regulatory interactions in Staphylococcus carnosus subsp. carnosus TM300
Locus tag Position Score Sequence
Position: -95
Score: 5.8
Sequence: TTAGAATTATTATAA
Locus tag: Sca_0039
Sca_0039 -95 5.8 TTAGAATTATTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ahpC
Ortholog function: alkyl hydroperoxide reductase subunit C
Staphylococcus aureus subsp. aureus N315 SA0366 -74 5.8 TTAGAATTATTATAA
Staphylococcus capitis SK14 STACA0001_1447 -76 5.8 TTAGAATTATTATAA
Staphylococcus epidermidis ATCC 12228 SE2357 -75 5.8 TTAGAATTATTATAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0039 -95 5.8 TTAGAATTATTATAA
Staphylococcus haemolyticus JCSC1435 SH2592 -77 5.8 TTAGAATTATTATAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP2333 -86 5.8 TTAGAATTATTATAA
Macrococcus caseolyticus JCSC5402 MCCL_0098 -125 5.2 TTGAAATAATTATAA
-52 5.7 TTAGAATTATTCTAA
Position: -58
Score: 5.7
Sequence: TTAAAATTATTATAA
Locus tag: Sca_0458
Sca_0458 -58 5.7 TTAAAATTATTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sufC
Ortholog function: hypothetical protein
Staphylococcus aureus subsp. aureus N315 SA0774 -56 5.7 TTAAAATTATTATAA
Staphylococcus capitis SK14 STACA0001_0212 -55 5.7 TTAAAATTATTATAA
Staphylococcus epidermidis ATCC 12228 SE0606 -55 5.7 TTAAAATTATTATAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_0458 -58 5.7 TTAAAATTATTATAA
Staphylococcus haemolyticus JCSC1435 SH2039 -55 5.7 TTAAAATTATTATAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1861 -57 5.7 TTAAAATTATTATAA
Macrococcus caseolyticus JCSC5402 MCCL_0542 -57 5.7 TTAAAATTATTATAA
Position: -40
Score: 5.5
Sequence: TTAAAATGATTATAA
Locus tag: Sca_1124
Sca_1124 -40 5.5 TTAAAATGATTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fur
Ortholog function: iron uptake regulatory protein Fur
Staphylococcus aureus subsp. aureus N315 SA1329 -122 5.6 TTATAATcATTcTAA
Staphylococcus capitis SK14 STACA0001_1739 -40 5.5 TTAAAATGATTATAA
Staphylococcus epidermidis ATCC 12228 SE1182 -40 5.5 TTAAAATGATTATAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1124 -40 5.5 TTAAAATGATTATAA
Staphylococcus haemolyticus JCSC1435 SH1418 -40 5.5 TTAAAATGATTATAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1254 -40 5.5 TTAAAATGATTATAA
Macrococcus caseolyticus JCSC5402 MCCL_1147 -95 5.6 TAATAATTATTCTAA
Position: -32
Score: 4.9
Sequence: TTAGAATGATTTTAT
Locus tag: Sca_1408
Sca_1408 -32 4.9 TTAGAATGATTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemE
Ortholog function: uroporphyrinogen-III decarboxylase
Staphylococcus aureus subsp. aureus N315 SA1652 -191 5.1 TTAAAATTACTATAA
-29 5.1 TAAGAATGATTTTAA
Staphylococcus capitis SK14 STACA0001_0695 -32 5.1 TAAGAATGATTTTAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1408 -32 4.9 TTAGAATGATTTTAT
Staphylococcus haemolyticus JCSC1435 SH1128 -32 5.1 TAAGAATGATTTTAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0965 -32 4.9 CAAGAATGATTATAA
Macrococcus caseolyticus JCSC5402 MCCL_1550 -138 5.1 TAATAGTTATTCTAA
Position: -36
Score: 5.6
Sequence: TAATAATTATTATTA
Locus tag: Sca_1434
Sca_1434 -36 5.6 TAATAATTATTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: perR
Ortholog function: peroxide-responsive repressor PerR
Staphylococcus aureus subsp. aureus N315 SA1678 -37 5.6 TAATAATAATTATTA
Staphylococcus capitis SK14 STACA0001_1914 -36 5.6 TAATAATTATTATTA
Staphylococcus epidermidis ATCC 12228 SE1545 -36 5.6 TAATAATAATTATTA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1434 -36 5.6 TAATAATTATTATTA
Staphylococcus haemolyticus JCSC1435 SH1102 -35 5.6 TAATAATTATTATTA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0932 -36 5.5 TAATAATAATTCTTA
Macrococcus caseolyticus JCSC5402 MCCL_1591 -33 4.8 ATAGAATTACTATAA
Position: -111
Score: 5.5
Sequence: TTAGAATTATTTTAA
Position: -70
Score: 5.8
Sequence: TTAGAATTATTATAA
Locus tag: Sca_1644
Sca_1644 -111 5.5 TTAGAATTATTTTAA
-70 5.8 TTAGAATTATTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dps
Ortholog function: metalloregulation DNA-binding stress protein
Staphylococcus aureus subsp. aureus N315 SA1941 -112 5.8 TTAGAATAATTATAA
-71 5.6 TTAGAATCATTATAA
-54 5.2 TAATAATTAATATAA
Staphylococcus capitis SK14 STACA0001_0845 -109 5.2 TTGAAATAATTATAA
-68 5.8 TTAGAATTATTATAA
-54 4.8 ATATAATAATTATTG
Staphylococcus epidermidis ATCC 12228 SE1738 -58 5.8 TTAGAATTATTATAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_1644 -111 5.5 TTAGAATTATTTTAA
-70 5.8 TTAGAATTATTATAA
-53 5.2 TAATAGTTATTATAA
Staphylococcus haemolyticus JCSC1435 SH0895 -71 5.8 TTATAATCATTATAA
-54 5.2 TAATAATAATTGTAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP0745 -129 5.3 TTAAAATGATTCTAA
-88 5.8 TTAGAATTATTATAA
-71 5.2 TAATAATTATTGTAA
Macrococcus caseolyticus JCSC5402 MCCL_1798 -55 5.6 TTAGAATGATTATAA
-38 5.2 TAATAATTAATATAA
Position: -33
Score: 5.8
Sequence: TTATAATTATTCTAA
Locus tag: Sca_2336
Sca_2336 -33 5.8 TTATAATTATTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: katA
Ortholog function: catalase
Staphylococcus aureus subsp. aureus N315 SA1170 -26 6 TTATAATTATTATAA
Staphylococcus capitis SK14 STACA0001_1577 -42 5.5 TTATAATTATTACAA
Staphylococcus carnosus subsp. carnosus TM300 Sca_2336 -33 5.8 TTATAATTATTCTAA
Staphylococcus haemolyticus JCSC1435 SH1573 -37 6 TTATAATTATTATAA
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 SSP1432 -41 5.6 TAATAATTATTATTA
Macrococcus caseolyticus JCSC5402 MCCL_0056 -46 5.4 TTATAATAATTATCA
-29 5.4 AAATAATTATTATAA
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