Propagation of Fnr regulog to Shewanella frigidimarina NCIMB 400
Source regulog: | Fnr - Shewanellaceae |
Regulator type: | Transcription factor |
Regulator family: | CRP |
Regulation mode: | |
Biological process: | Anaerobic metabolism |
Effector: | Oxygen |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Shewanella frigidimarina NCIMB 400 |
Orthologous TF(s) | Sfri_2018 |
Regulated genes | 29 |

Locus tag | Position | Score | Sequence | |
---|---|---|---|---|
Position: -225
Score: 4.6 Sequence: GTGATCTGGCGCAA
Locus tag: Sfri_0052
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Sfri_0052 | -225 | 4.6 | GTGATCTGGCGCAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: SO4504 | ||||
Ortholog function: Conserved hypothetical protein | ||||
Shewanella amazonensis SB2B | Sama_3618 | -109 | 4.2 | ATGATCCACTTCAA |
Shewanella baltica OS155 | Sbal_4131 | -226 | 4.2 | GTGATCTGCCGCAA |
-132 | 4.8 | ATGATCTAGTTCAA | ||
Shewanella frigidimarina NCIMB 400 | Sfri_0052 | -225 | 4.6 | GTGATCTGGCGCAA |
-121 | 3.9 | GGGATCTAGTTCAA | ||
Shewanella halifaxensis HAW-EB4 | Shal_0100 | -120 | 5 | TTGATCTAGTTCAA |
Shewanella loihica PV-4 | Shew_0054 | -123 | 4.5 | ATGATCCAGTTCAA |
Shewanella oneidensis MR-1 | SO4504 | -126 | 4.2 | ATGATCCACTTCAA |
Shewanella pealeana ATCC 700345 | Spea_4142 | -119 | 5 | TTGATCTAGTTCAA |
Shewanella piezotolerans WP3 | swp_5034 | -118 | 5 | TTGATCTAGTTCAA |
Shewanella putrefaciens CN-32 | Sputcn32_0342 | -230 | 4.1 | GTGATCTATCGCAA |
-136 | 4.5 | ATGATCTACTTCAA | ||
Shewanella sediminis HAW-EB3 | Ssed_4426 | -119 | 4.8 | ATGATCCAGCTCAA |
Shewanella sp ANA-3 | Shewana3_3911 | -127 | 4.5 | ATGATCCACCTCAA |
Shewanella sp MR-4 | Shewmr4_3715 | -127 | 4.5 | ATGATCCACCTCAA |
Shewanella sp MR-7 | Shewmr7_3786 | -127 | 4.5 | ATGATCCACCTCAA |
Shewanella sp W3-18-1 | Sputw3181_3866 | -136 | 4.5 | ATGATCTACTTCAA |
Shewanella woodyi ATCC 51908 | Swoo_4818 | -144 | 5.2 | ATGATCTAGCTCAA |
Position: -273
Score: 3.9 Sequence: TTGACGTAGGGCAA
Locus tag: Sfri_0081
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Sfri_0081 | -273 | 3.9 | TTGACGTAGGGCAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: etfD | ||||
Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) | ||||
Shewanella amazonensis SB2B | Sama_3523 | -184 | 4.6 | TTGGTCTGGATCAT |
Shewanella loihica PV-4 | Shew_0086 | -175 | 3.9 | TTGTTTAAGATCAA |
Shewanella oneidensis MR-1 | SO4453 | -198 | 4.3 | TTGATCAGGTTCAA |
Shewanella putrefaciens CN-32 | Sputcn32_0388 | -198 | 4.2 | TTGGCCTAGATCAA |
Shewanella sediminis HAW-EB3 | Ssed_4403 | -177 | 4.6 | TTGCTCAAGATCAA |
Shewanella sp ANA-3 | Shewana3_0273 | -202 | 4.3 | TTGATCCGCTTCAA |
Shewanella sp MR-4 | Shewmr4_0272 | -202 | 4.3 | TTGATCCGCTTCAA |
Shewanella sp MR-7 | Shewmr7_3749 | -202 | 4.3 | TTGATCCGCTTCAA |
Shewanella sp W3-18-1 | Sputw3181_0242 | -198 | 4.2 | TTGGCCTAGATCAA |
Shewanella woodyi ATCC 51908 | Swoo_4794 | -162 | 4.5 | TTGCTCAGGATCAA |
Position: -317
Score: 4.9 Sequence: GTGATCTTGATCAA
Position: -209
Score: 4.8 Sequence: ATGATCCAAATCAA
Locus tag: Sfri_0258
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Sfri_0258 | -317 | 4.9 | GTGATCTTGATCAA | |
-209 | 4.8 | ATGATCCAAATCAA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: coxB | ||||
Ortholog function: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1) | ||||
Shewanella amazonensis SB2B | Sama_3483 | -314 | 4.9 | GTGATCTTGATCAA |
Shewanella baltica OS155 | Sbal_0154 | -313 | 4.9 | GTGATCTTGATCAA |
Shewanella denitrificans OS217 | Sden_3517 | -312 | 4.9 | GTGATCTTGATCAA |
Shewanella frigidimarina NCIMB 400 | Sfri_0258 | -317 | 4.9 | GTGATCTTGATCAA |
-209 | 4.8 | ATGATCCAAATCAA | ||
Shewanella halifaxensis HAW-EB4 | Shal_0258 | -372 | 4.9 | GTGATCTTGATCAA |
Shewanella loihica PV-4 | Shew_0125 | -317 | 4.9 | GTGATCTTGATCAA |
Shewanella oneidensis MR-1 | SO4606 | -313 | 4.9 | GTGATCTTGATCAA |
Shewanella pealeana ATCC 700345 | Spea_3999 | -349 | 4.9 | GTGATCTTGATCAA |
-246 | 4.2 | TAGATCCTGATCAA | ||
Shewanella piezotolerans WP3 | swp_4823 | -366 | 4.9 | GTGATCTTGATCAA |
Shewanella putrefaciens CN-32 | Sputcn32_3782 | -305 | 4.9 | GTGATCTTGATCAA |
Shewanella sediminis HAW-EB3 | Ssed_0198 | -339 | 5.2 | TTGATCTTGATCAA |
Shewanella sp ANA-3 | Shewana3_3991 | -314 | 4.9 | GTGATCTTGATCAA |
Shewanella sp MR-4 | Shewmr4_3791 | -314 | 4.9 | GTGATCTTGATCAA |
Shewanella sp MR-7 | Shewmr7_3864 | -313 | 4.9 | GTGATCTTGATCAA |
Shewanella sp W3-18-1 | Sputw3181_0133 | -305 | 4.9 | GTGATCTTGATCAA |
Shewanella woodyi ATCC 51908 | Swoo_0178 | -337 | 4.9 | GTGATCTTGATCAA |
Position: -75
Score: 4.3 Sequence: TTGATCAAGATCAG
Locus tag: Sfri_0507
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Sfri_0507 | -75 | 4.3 | TTGATCAAGATCAG | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: Sama_0549 | ||||
Ortholog function: Conserved hypothetical protein | ||||
Shewanella amazonensis SB2B | Sama_0549 | -135 | 4.6 | TTGATTCACATCAA |
-75 | 4.3 | TTGATCAAGATCAG | ||
Shewanella baltica OS155 | Sbal_3565 | -75 | 4.3 | TTGATCAAGATCAG |
Shewanella frigidimarina NCIMB 400 | Sfri_0507 | -75 | 4.3 | TTGATCAAGATCAG |
Shewanella halifaxensis HAW-EB4 | Shal_0680 | -75 | 4 | TTGACTAAGATCAA |
Shewanella loihica PV-4 | Shew_3247 | -87 | 4.4 | TTGATCGAGATCAG |
Shewanella pealeana ATCC 700345 | Spea_0593 | -138 | 4.2 | ATGATCTACAACAT |
-78 | 4.2 | TTGACTGAGATCAA | ||
Shewanella piezotolerans WP3 | swp_4510 | 0 | 4.4 | TTGACCAAGATCAA |
Shewanella putrefaciens CN-32 | Sputcn32_0777 | -75 | 4.2 | TTGATCAGGATCAG |
Shewanella sediminis HAW-EB3 | Ssed_4003 | -244 | 4.2 | TTTATCTAGATCAC |
-87 | 4.4 | TTGATCGAGATCAG | ||
Shewanella sp ANA-3 | Shewana3_0738 | -75 | 4.2 | TTGATCAGGATCAG |
Shewanella sp W3-18-1 | Sputw3181_3398 | -75 | 4.2 | TTGATCAGGATCAG |
Shewanella woodyi ATCC 51908 | Swoo_4146 | -77 | 4.4 | TTGATCGAGATCAG |
Position: -161
Score: 3.8 Sequence: CAGATCTGAATCAT
Position: -111
Score: 4.2 Sequence: TTGATTACGATCAA
Locus tag: Sfri_0616
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Sfri_0616 | -161 | 3.8 | CAGATCTGAATCAT | |
-111 | 4.2 | TTGATTACGATCAA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: nrfX | ||||
Ortholog function: Nitrite reductase, predicted component | ||||
Shewanella baltica OS155 | Sbal_0180 | -93 | 3.8 | GTGATCGTGTTCAA |
Shewanella frigidimarina NCIMB 400 | Sfri_0616 | -111 | 4.2 | TTGATTACGATCAA |
Shewanella putrefaciens CN-32 | Sputcn32_0312 | -95 | 3.8 | GTGATGCTGGTCAA |
Shewanella sp ANA-3 | Shewana3_3963 | -95 | 4.2 | GTGATCTATGTCAA |
Shewanella sp MR-4 | Shewmr4_3765 | -95 | 4.2 | GTGATCTATGTCAA |
Shewanella sp MR-7 | Shewmr7_3838 | -95 | 4.1 | GTGATCTGTGTCAA |
Position: -159
Score: 4.5 Sequence: TTGCGCCAGATCAA
Locus tag: Sfri_0621
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Sfri_0621 | -159 | 4.5 | TTGCGCCAGATCAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: narQ | ||||
Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) | ||||
Shewanella amazonensis SB2B | Sama_0647 | -131 | 4.2 | TTGCACAAGATCAA |
Shewanella baltica OS155 | Sbal_0793 | -117 | 4.9 | TTGCGCTAGATCAA |
Shewanella frigidimarina NCIMB 400 | Sfri_0621 | -159 | 4.5 | TTGCGCCAGATCAA |
Shewanella halifaxensis HAW-EB4 | Shal_0885 | -130 | 4.6 | TTGCGGTAGATCAA |
Shewanella loihica PV-4 | Shew_0843 | -132 | 4.5 | TTGAGGCAGATCAT |
Shewanella oneidensis MR-1 | SO3981 | -170 | 4.9 | TTGCGCTAGATCAA |
Shewanella pealeana ATCC 700345 | Spea_0830 | -128 | 4.6 | TTGCGGTAGATCAA |
Shewanella putrefaciens CN-32 | Sputcn32_0684 | -133 | 4.5 | TTGCGCCAGATCAA |
Shewanella sediminis HAW-EB3 | Ssed_0930 | -132 | 4.5 | ATGCGGTAGATCAA |
Shewanella sp ANA-3 | Shewana3_0657 | -134 | 4.9 | TTGCGCTAGATCAA |
Shewanella sp MR-4 | Shewmr4_0658 | -135 | 4.9 | TTGCGCTAGATCAA |
Shewanella sp MR-7 | Shewmr7_3364 | -135 | 4.9 | TTGCGCTAGATCAA |
Shewanella sp W3-18-1 | Sputw3181_3487 | -133 | 4.5 | TTGCGCCAGATCAA |
Shewanella woodyi ATCC 51908 | Swoo_0971 | -131 | 4.6 | TTGCGGTAGATCAA |
Position: -138
Score: 4.9 Sequence: TTGATCTGGCGCAA
Locus tag: Sfri_0622
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Sfri_0622 | -138 | 4.9 | TTGATCTGGCGCAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: nrfA | ||||
Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) | ||||
Shewanella amazonensis SB2B | Sama_0648 | -128 | 4.3 | TTGATCTTGTGCAA |
Shewanella baltica OS155 | Sbal_0794 | -122 | 5 | TTGATCTAGCGCAA |
Shewanella frigidimarina NCIMB 400 | Sfri_0622 | -138 | 4.9 | TTGATCTGGCGCAA |
Shewanella halifaxensis HAW-EB4 | Shal_0886 | -125 | 4.6 | TTGATCTACCGCAA |
Shewanella loihica PV-4 | Shew_0844 | -129 | 4.8 | ATGATCTGCCTCAA |
Shewanella oneidensis MR-1 | SO3980 | -122 | 5 | TTGATCTAGCGCAA |
Shewanella pealeana ATCC 700345 | Spea_0831 | -128 | 4.6 | TTGATCTACCGCAA |
Shewanella piezotolerans WP3 | swp_3958 | -123 | 4.6 | TTGATCTAACGCAA |
Shewanella putrefaciens CN-32 | Sputcn32_0685 | -122 | 4.9 | TTGATCTGGCGCAA |
Shewanella sediminis HAW-EB3 | Ssed_0931 | -127 | 4.4 | TTGATCTACCGCAT |
Shewanella sp ANA-3 | Shewana3_0658 | -104 | 5 | TTGATCTAGCGCAA |
Shewanella sp MR-4 | Shewmr4_0659 | -104 | 5 | TTGATCTAGCGCAA |
Shewanella sp MR-7 | Shewmr7_3363 | -104 | 5 | TTGATCTAGCGCAA |
Shewanella sp W3-18-1 | Sputw3181_3486 | -122 | 4.9 | TTGATCTGGCGCAA |
Shewanella woodyi ATCC 51908 | Swoo_0972 | -127 | 4.6 | TTGATCTACCGCAA |
Position: -31
Score: 4.5 Sequence: ATTATCTAGATCAT
Locus tag: Sfri_0679
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Sfri_0679 | -31 | 4.5 | ATTATCTAGATCAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: frdA | ||||
Ortholog function: Fumarate reductase, flavoprotein subunit | ||||
Shewanella baltica OS155 | Sbal_3750 | -79 | 4.3 | TTAATCTGGATCTA |
Shewanella frigidimarina NCIMB 400 | Sfri_0679 | -31 | 4.5 | ATTATCTAGATCAT |
Shewanella halifaxensis HAW-EB4 | Shal_3897 | -134 | 3.9 | GTGATCTACGTCTA |
Shewanella loihica PV-4 | Shew_0334 | -122 | 3.9 | GTGATCGACGTCAA |
Shewanella pealeana ATCC 700345 | Spea_0394 | -134 | 4.4 | GTGATCTTGATCTA |
Shewanella piezotolerans WP3 | swp_0430 | -134 | 4.1 | GTGATCTTGCTCTA |
Shewanella sediminis HAW-EB3 | Ssed_4114 | -100 | 4.3 | TTGATCTGCCTCAC |
Shewanella woodyi ATCC 51908 | Swoo_0509 | -134 | 4.4 | GTGATGTGGTTCAA |
Position: -37
Score: 4.5 Sequence: TTGATCGAGATCAC
Locus tag: Sfri_0957
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Sfri_0957 | -37 | 4.5 | TTGATCGAGATCAC | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: bfr2 | ||||
Ortholog function: Bacterioferritin | ||||
Shewanella amazonensis SB2B | Sama_2530 | -41 | 5.4 | TTGATGTAGATCAA |
Shewanella baltica OS155 | Sbal_0932 | -44 | 5.3 | TTGATTTAGATCAA |
Shewanella denitrificans OS217 | Sden_0990 | -36 | 4.6 | TTGATTTGGATCAC |
Shewanella frigidimarina NCIMB 400 | Sfri_0957 | -37 | 4.5 | TTGATCGAGATCAC |
Shewanella halifaxensis HAW-EB4 | Shal_3179 | -33 | 5.2 | TTGATATAGATCAA |
Shewanella loihica PV-4 | Shew_2873 | -33 | 5.3 | TTGATTTAGATCAA |
Shewanella oneidensis MR-1 | SO1111 | -43 | 5.3 | TTGATTTAGATCAA |
Shewanella pealeana ATCC 700345 | Spea_3095 | -33 | 5.2 | TTGATATAGATCAA |
Shewanella piezotolerans WP3 | swp_1175 | -35 | 5.2 | TTGATATAGATCAA |
Shewanella putrefaciens CN-32 | Sputcn32_0948 | -44 | 5.3 | TTGATTTAGATCAA |
Shewanella sediminis HAW-EB3 | Ssed_2230 | -31 | 5.2 | TTGATATAGATCAA |
Shewanella sp ANA-3 | Shewana3_0946 | -43 | 5.3 | TTGATTTAGATCAA |
Shewanella sp MR-4 | Shewmr4_0944 | -42 | 5.3 | TTGATTTAGATCAA |
Shewanella sp MR-7 | Shewmr7_0982 | -43 | 5.3 | TTGATTTAGATCAA |
Shewanella sp W3-18-1 | Sputw3181_3228 | -44 | 5.3 | TTGATTTAGATCAA |
Shewanella woodyi ATCC 51908 | Swoo_3608 | -85 | 5.4 | TTGATGTAGATCAA |
Position: -338
Score: 4.2 Sequence: ATGATTGTGATCAA
Locus tag: Sfri_1142
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Sfri_1142 | -338 | 4.2 | ATGATTGTGATCAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: cydA | ||||
Ortholog function: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-) | ||||
Shewanella amazonensis SB2B | Sama_2349 | -334 | 4.3 | TTGATTTACGTCAA |
Shewanella baltica OS155 | Sbal_2979 | -342 | 4.9 | TTGATTTGCATCAA |
Shewanella denitrificans OS217 | Sden_1274 | -153 | 5.3 | TTGATCTAAATCAA |
Shewanella frigidimarina NCIMB 400 | Sfri_1142 | -338 | 4.2 | ATGATTGTGATCAA |
Shewanella halifaxensis HAW-EB4 | Shal_1381 | -336 | 4.9 | TTGATTTGAATCAA |
-51 | 4.4 | TTGATGGGGATCTA | ||
Shewanella loihica PV-4 | Shew_1302 | -341 | 4.9 | TTGATTTGAATCAA |
-51 | 4.4 | TTGATGGGGATCTA | ||
Shewanella oneidensis MR-1 | SO3286 | -338 | 4.9 | TTGATTTGAATCAA |
Shewanella pealeana ATCC 700345 | Spea_1318 | -337 | 4.9 | TTGATTTGAATCAA |
-51 | 4.4 | TTGATGGGGATCTA | ||
Shewanella piezotolerans WP3 | swp_1469 | -332 | 4.9 | TTGATTTGAATCAA |
-51 | 4.4 | TTGATGGGGATCTA | ||
Shewanella putrefaciens CN-32 | Sputcn32_2641 | -339 | 4.9 | TTGATTTGAATCAA |
Shewanella sediminis HAW-EB3 | Ssed_3118 | -336 | 4.9 | TTGATTTGAATCAA |
Shewanella sp ANA-3 | Shewana3_1241 | -338 | 4.9 | TTGATTTGAATCAA |
Shewanella sp MR-4 | Shewmr4_1239 | -338 | 4.9 | TTGATTTGAATCAA |
Shewanella sp MR-7 | Shewmr7_1310 | -338 | 4.9 | TTGATTTGAATCAA |
Shewanella sp W3-18-1 | Sputw3181_1366 | -339 | 4.9 | TTGATTTGAATCAA |
Shewanella woodyi ATCC 51908 | Swoo_1565 | -334 | 4.9 | TTGATTTGAATCAA |
-51 | 4.2 | ATGATGGGGATCTA | ||
Position: -166
Score: 4.6 Sequence: GTGATCCAAATCAA
Position: -105
Score: 5.3 Sequence: TTGATCTAAATCAA
Locus tag: Sfri_1334
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Sfri_1334 | -166 | 4.6 | GTGATCCAAATCAA | |
-105 | 5.3 | TTGATCTAAATCAA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ompW | ||||
Ortholog function: Outer membrane protein W precursor | ||||
Shewanella amazonensis SB2B | Sama_1371 | -105 | 5.2 | TTGATTTGGATCAA |
Shewanella baltica OS155 | Sbal_1490 | -103 | 5.2 | TTGATTTGGATCAA |
Shewanella denitrificans OS217 | Sden_2589 | -153 | 4.5 | GTGAATTAGATCAA |
-103 | 5.3 | TTGATCCAGATCAA | ||
Shewanella frigidimarina NCIMB 400 | Sfri_1334 | -166 | 4.6 | GTGATCCAAATCAA |
-105 | 5.3 | TTGATCTAAATCAA | ||
Shewanella halifaxensis HAW-EB4 | Shal_2887 | -107 | 4.4 | TTGATTCAGGTCAA |
Shewanella oneidensis MR-1 | SO1673 | -293 | 4.3 | TTGATGTAAATGAA |
-106 | 5.2 | TTGATTTGGATCAA | ||
Shewanella pealeana ATCC 700345 | Spea_2787 | -155 | 4.3 | GTGATCTAGATCCT |
-104 | 5.3 | TTGATTTAGATCAA | ||
Shewanella piezotolerans WP3 | swp_3395 | -107 | 5.6 | TTGATCTAGATCAA |
Shewanella putrefaciens CN-32 | Sputcn32_1392 | -103 | 5.3 | TTGATTTAGATCAA |
Shewanella sediminis HAW-EB3 | Ssed_1469 | -154 | 3.8 | GTGAGCTTGGTCAT |
-104 | 5.6 | TTGATCTGGATCAA | ||
Shewanella sp ANA-3 | Shewana3_2775 | -103 | 5.2 | TTGATTTGGATCAA |
Shewanella sp MR-4 | Shewmr4_2601 | -103 | 5.2 | TTGATTTGGATCAA |
Shewanella sp MR-7 | Shewmr7_2668 | -103 | 5.2 | TTGATTTGGATCAA |
Shewanella sp W3-18-1 | Sputw3181_2709 | -103 | 5.3 | TTGATTTAGATCAA |
Shewanella woodyi ATCC 51908 | Swoo_3207 | -154 | 4.1 | GTGAGTTCGATCAA |
-104 | 5.2 | TTGATTTGGATCAA | ||
Position: -151
Score: 4.5 Sequence: GTGATGTGAATCAT
Locus tag: Sfri_1748
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Sfri_1748 | -151 | 4.5 | GTGATGTGAATCAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ydhD | ||||
Ortholog function: Glutaredoxin-related protein | ||||
Shewanella amazonensis SB2B | Sama_1919 | -169 | 4.5 | GTGATGTGAATCAT |
Shewanella baltica OS155 | Sbal_1783 | -152 | 4.5 | GTGATGTGAATCAT |
Shewanella denitrificans OS217 | Sden_1640 | -133 | 4.5 | GTGATGTGCATCAT |
Shewanella frigidimarina NCIMB 400 | Sfri_1748 | -151 | 4.5 | GTGATGTGAATCAT |
Shewanella halifaxensis HAW-EB4 | Shal_2335 | -150 | 3.9 | GTGAAGTGTATCAT |
Shewanella loihica PV-4 | Shew_1835 | -160 | 4.5 | GTGATGTGAATCAT |
Shewanella oneidensis MR-1 | SO2880 | -153 | 4.5 | GTGATGTGAATCAT |
Shewanella pealeana ATCC 700345 | Spea_1964 | -150 | 3.9 | GTGAAGTGTATCAT |
Shewanella piezotolerans WP3 | swp_2753 | -149 | 3.9 | GTGAAGTGTATCAT |
Shewanella putrefaciens CN-32 | Sputcn32_1688 | -152 | 4.5 | GTGATGTGAATCAT |
Shewanella sp ANA-3 | Shewana3_1640 | -153 | 4.5 | GTGATGTGAATCAT |
Shewanella sp MR-4 | Shewmr4_1573 | -153 | 4.5 | GTGATGTGAATCAT |
Shewanella sp MR-7 | Shewmr7_1648 | -153 | 4.5 | GTGATGTGAATCAT |
Shewanella sp W3-18-1 | Sputw3181_2337 | -152 | 4.5 | GTGATGTGAATCAT |
Position: -224
Score: 5.6 Sequence: TTGATCTAGATCAA
Locus tag: Sfri_2010
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Sfri_2010 | -224 | 5.6 | TTGATCTAGATCAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ccoN | ||||
Ortholog function: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1) | ||||
Shewanella amazonensis SB2B | Sama_1791 | -218 | 5.3 | TTGATCCAGATCAA |
Shewanella baltica OS155 | Sbal_2201 | -212 | 5.6 | TTGATCTAGATCAA |
-169 | 4.5 | TTGATATTGCTCAA | ||
Shewanella baltica OS155 | Sbal_4487 | -212 | 5.6 | TTGATCTAGATCAA |
-169 | 4.5 | TTGATATTGCTCAA | ||
Shewanella denitrificans OS217 | Sden_1851 | -220 | 5.3 | TTGATCCAGATCAA |
-178 | 5.1 | TTGATGTAGCTCAA | ||
Shewanella frigidimarina NCIMB 400 | Sfri_2010 | -224 | 5.6 | TTGATCTAGATCAA |
-182 | 4.3 | TTGACTTAGCTCAA | ||
Shewanella halifaxensis HAW-EB4 | Shal_2197 | -217 | 5.6 | TTGATCTAGATCAA |
-174 | 4.9 | TTGATATAGCTCAA | ||
Shewanella loihica PV-4 | Shew_1985 | -217 | 5.6 | TTGATCTGGATCAA |
-174 | 4.5 | TTGATATTGCTCAA | ||
Shewanella oneidensis MR-1 | SO2364 | -212 | 5.6 | TTGATCTAGATCAA |
-169 | 4.2 | TTGACATGGCTCAA | ||
-106 | 4.3 | TTGACATAGCTCAA | ||
Shewanella pealeana ATCC 700345 | Spea_2214 | -215 | 5.6 | TTGATCTAGATCAA |
-172 | 4.9 | TTGATATAGCTCAA | ||
Shewanella piezotolerans WP3 | swp_2572 | -217 | 5.6 | TTGATCTAGATCAA |
-174 | 4.3 | TTGACATAGCTCAA | ||
Shewanella putrefaciens CN-32 | Sputcn32_1959 | -210 | 5.6 | TTGATCTAGATCAA |
-167 | 3.9 | TTGACATTGCTCAA | ||
Shewanella sediminis HAW-EB3 | Ssed_2211 | -216 | 5.6 | TTGATCTAGATCAA |
-173 | 4.3 | TTGACATAGCTCAA | ||
Shewanella sp ANA-3 | Shewana3_2107 | -210 | 5.6 | TTGATCTAGATCAA |
-167 | 4.2 | TTGACATGGCTCAA | ||
Shewanella sp MR-4 | Shewmr4_2006 | -210 | 5.6 | TTGATCTAGATCAA |
-167 | 4.2 | TTGACATGGCTCAA | ||
Shewanella sp MR-7 | Shewmr7_1969 | -210 | 5.6 | TTGATCTAGATCAA |
-167 | 4.2 | TTGACATGGCTCAA | ||
Shewanella sp W3-18-1 | Sputw3181_2046 | -210 | 5.6 | TTGATCTAGATCAA |
-167 | 3.9 | TTGACATTGCTCAA | ||
Shewanella woodyi ATCC 51908 | Swoo_2425 | -216 | 5.6 | TTGATCTAGATCAA |
-173 | 4.3 | TTGACATAGCTCAA | ||
Position: -87
Score: 4.6 Sequence: ATGATCTATCTCAA
Locus tag: Sfri_2019
|
||||
Sfri_2019 | -87 | 4.6 | ATGATCTATCTCAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: uspE | ||||
Ortholog function: Universal stress protein E | ||||
Shewanella amazonensis SB2B | Sama_1800 | -74 | 4.6 | TTGATCTAAAACAA |
Shewanella baltica OS155 | Sbal_2210 | -72 | 4.9 | TTGATCTAGAACAA |
Shewanella baltica OS155 | Sbal_4496 | -72 | 4.9 | TTGATCTAGAACAA |
Shewanella denitrificans OS217 | Sden_1842 | -69 | 4.2 | TTGATATAGCTCAC |
Shewanella frigidimarina NCIMB 400 | Sfri_2019 | -87 | 4.6 | ATGATCTATCTCAA |
Shewanella halifaxensis HAW-EB4 | Shal_2206 | -73 | 4.6 | TTGATCTAAAACAA |
Shewanella loihica PV-4 | Shew_1994 | -72 | 4.6 | TTGATCTAAAACAA |
Shewanella oneidensis MR-1 | SO2355 | -72 | 4.9 | TTGATCTAGAACAA |
Shewanella pealeana ATCC 700345 | Spea_2223 | -74 | 4.6 | TTGATCTAAAACAA |
Shewanella piezotolerans WP3 | swp_2581 | -71 | 4.6 | TTGATCTAAAACAA |
Shewanella putrefaciens CN-32 | Sputcn32_1950 | -72 | 4.9 | TTGATCTAGAACAA |
Shewanella sediminis HAW-EB3 | Ssed_2220 | -71 | 4.6 | TTGATCTGAAACAA |
Shewanella sp ANA-3 | Shewana3_2116 | -72 | 4.9 | TTGATCTAGAACAA |
Shewanella sp MR-4 | Shewmr4_2015 | -72 | 4.9 | TTGATCTAGAACAA |
Shewanella sp MR-7 | Shewmr7_1960 | -72 | 4.9 | TTGATCTAGAACAA |
Shewanella sp W3-18-1 | Sputw3181_2055 | -72 | 4.9 | TTGATCTAGAACAA |
Shewanella woodyi ATCC 51908 | Swoo_2416 | -70 | 4.9 | TTGATCTAAAGCAA |
Position: -164
Score: 4.4 Sequence: TTGATCAACATCAT
Position: -103
Score: 4.7 Sequence: TTGATTTATATCAA
Locus tag: Sfri_2103
|
||||
Sfri_2103 | -164 | 4.4 | TTGATCAACATCAT | |
-103 | 4.7 | TTGATTTATATCAA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: hyaA | ||||
Ortholog function: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1) | ||||
Shewanella amazonensis SB2B | Sama_1679 | -107 | 4.2 | TTGACGTGTATCAA |
Shewanella baltica OS155 | Sbal_1889 | -163 | 3.8 | TAGATCTACGTCAT |
-103 | 4.9 | TTGATATACATCAA | ||
Shewanella frigidimarina NCIMB 400 | Sfri_2103 | -164 | 4.4 | TTGATCAACATCAT |
-103 | 4.7 | TTGATTTATATCAA | ||
Shewanella halifaxensis HAW-EB4 | Shal_2261 | -208 | 3.8 | GTGATCTCCATCAC |
-148 | 5.2 | ATGATCTAGCTCAA | ||
-87 | 3.9 | TTGACGCATATCAA | ||
Shewanella loihica PV-4 | Shew_1765 | -220 | 4.7 | TTGAAGCGGATCAA |
-160 | 4.8 | TTGATCCAGCTCAT | ||
-99 | 4.2 | TTGACATACATCAA | ||
Shewanella oneidensis MR-1 | SO2099 | -101 | 4.8 | TTGATATGCATCAA |
Shewanella pealeana ATCC 700345 | Spea_2033 | -147 | 5.2 | ATGATCTAGCTCAA |
-86 | 3.8 | TTGACTCATATCAA | ||
Shewanella putrefaciens CN-32 | Sputcn32_2088 | -103 | 4.9 | TTGATATACATCAA |
Shewanella sediminis HAW-EB3 | Ssed_1908 | -158 | 4.6 | ATGATCTAGTTCAT |
-98 | 4.5 | TTGATGTGAGTCAA | ||
Shewanella sp ANA-3 | Shewana3_1880 | -162 | 4.3 | TAGATCTGCATCAT |
-102 | 4.8 | TTGATATGCATCAA | ||
Shewanella sp MR-4 | Shewmr4_1822 | -162 | 4.3 | TAGATCTGCATCAT |
-102 | 4.8 | TTGATATGCATCAA | ||
Shewanella sp MR-7 | Shewmr7_2155 | -162 | 4.3 | TAGATCTGCATCAT |
-102 | 4.8 | TTGATATGCATCAA | ||
Shewanella sp W3-18-1 | Sputw3181_1924 | -103 | 4.9 | TTGATATACATCAA |
Position: -106
Score: 5.4 Sequence: ATGATCTGGATCAA
Locus tag: Sfri_2443
|
||||
Sfri_2443 | -106 | 5.4 | ATGATCTGGATCAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: nrdD | ||||
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
Shewanella amazonensis SB2B | Sama_1275 | -114 | 4.6 | ATGATCCATATCAA |
Shewanella baltica OS155 | Sbal_1665 | -122 | 5.2 | ATGATCTGGATCAT |
Shewanella denitrificans OS217 | Sden_1419 | -166 | 5.5 | ATGATCTAGATCAA |
Shewanella frigidimarina NCIMB 400 | Sfri_2443 | -106 | 5.4 | ATGATCTGGATCAA |
Shewanella halifaxensis HAW-EB4 | Shal_2692 | -123 | 5.4 | ATGATCTGGATCAA |
Shewanella loihica PV-4 | Shew_2449 | -122 | 5.4 | ATGATCTGGATCAA |
Shewanella oneidensis MR-1 | SO2834 | -269 | 4 | TTGATTTTAAGCAT |
-121 | 5.2 | ATGATCTGGATCAT | ||
Shewanella pealeana ATCC 700345 | Spea_2619 | -123 | 5.4 | ATGATCTGGATCAA |
Shewanella piezotolerans WP3 | swp_3165 | -122 | 5.4 | ATGATCTGGATCAA |
-62 | 3.8 | TTGATTTAAAGTAA | ||
Shewanella putrefaciens CN-32 | Sputcn32_1540 | -203 | 3.9 | ATGACTTAGGTCAA |
-121 | 5.2 | ATGATCTGGATCAT | ||
Shewanella sediminis HAW-EB3 | Ssed_1600 | -122 | 5 | ATGATCGAGATCAA |
Shewanella sp ANA-3 | Shewana3_2603 | -121 | 5.2 | ATGATCTGGATCAT |
Shewanella sp MR-4 | Shewmr4_2441 | -121 | 5.2 | ATGATCTGGATCAT |
Shewanella sp MR-7 | Shewmr7_2511 | -121 | 5.2 | ATGATCTGGATCAT |
Shewanella sp W3-18-1 | Sputw3181_2559 | -203 | 3.9 | ATGACTTAGGTCAA |
-121 | 5.2 | ATGATCTGGATCAT | ||
Shewanella woodyi ATCC 51908 | Swoo_3049 | -122 | 4.8 | ATGATCAGGATCAA |
Position: -146
Score: 5.3 Sequence: ATGATCTAGATCAT
Locus tag: Sfri_2555
|
||||
Sfri_2555 | -146 | 5.3 | ATGATCTAGATCAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: napE2 | ||||
Ortholog function: Periplasmic nitrate reductase component NapE | ||||
Shewanella amazonensis SB2B | Sama_1620 | -133 | 5.4 | ATGATCTGGATCAA |
Shewanella baltica OS155 | Sbal_1908 | -171 | 5.4 | ATGATCTGGATCAA |
Shewanella denitrificans OS217 | Sden_1495 | -69 | 5.1 | CTGATCTAGATCAA |
Shewanella frigidimarina NCIMB 400 | Sfri_2555 | -146 | 5.3 | ATGATCTAGATCAT |
Shewanella loihica PV-4 | Shew_1768 | -181 | 5.1 | ATGATCCAGATCAA |
Shewanella pealeana ATCC 700345 | Spea_2429 | -191 | 5.4 | ATGATCTGGATCAA |
Shewanella putrefaciens CN-32 | Sputcn32_1901 | -172 | 5.4 | ATGATCTGGATCAA |
Shewanella sp ANA-3 | Shewana3_1898 | -164 | 5.4 | ATGATCTGGATCAA |
Shewanella sp MR-4 | Shewmr4_1840 | -164 | 5.4 | ATGATCTGGATCAA |
Shewanella sp MR-7 | Shewmr7_2137 | -164 | 5.4 | ATGATCTGGATCAA |
Shewanella sp W3-18-1 | Sputw3181_2107 | -172 | 5.4 | ATGATCTGGATCAA |
Position: -112
Score: 5 Sequence: ATGATCTCGATCAA
Locus tag: Sfri_2793
|
||||
Sfri_2793 | -112 | 5 | ATGATCTCGATCAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: lldP | ||||
Ortholog function: L-lactate permease | ||||
Shewanella frigidimarina NCIMB 400 | Sfri_2793 | -112 | 5 | ATGATCTCGATCAA |
Shewanella halifaxensis HAW-EB4 | Shal_3083 | -214 | 4.9 | TTGATCTGGATCAC |
Shewanella oneidensis MR-1 | SO1522 | -176 | 5.3 | ATGATCTAGATCAT |
Shewanella pealeana ATCC 700345 | Spea_2994 | -190 | 4.9 | ATGATCCAGATCAT |
Shewanella sp MR-4 | Shewmr4_2734 | -177 | 5.3 | ATGATCTAGATCAT |
Shewanella sp MR-7 | Shewmr7_2807 | -177 | 5.3 | ATGATCTAGATCAT |
Position: -154
Score: 4.6 Sequence: TTGATCTAAATCAC
Locus tag: Sfri_2947
|
||||
Sfri_2947 | -154 | 4.6 | TTGATCTAAATCAC | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: cyaB | ||||
Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
Shewanella amazonensis SB2B | Sama_0861 | -98 | 4.3 | TTGATTCAGATCAC |
Shewanella baltica OS155 | Sbal_1182 | -97 | 4.6 | TTGATCCAGATCAC |
Shewanella denitrificans OS217 | Sden_2784 | -153 | 5 | TTGATCTAGATCAC |
Shewanella frigidimarina NCIMB 400 | Sfri_2947 | -154 | 4.6 | TTGATCTAAATCAC |
Shewanella halifaxensis HAW-EB4 | Shal_1065 | -95 | 4 | TTGACTTAGATCAC |
Shewanella loihica PV-4 | Shew_1036 | -158 | 4 | TTGACTTAGATCAC |
Shewanella oneidensis MR-1 | SO1329 | -158 | 4.6 | TTGATCCAGATCAC |
Shewanella pealeana ATCC 700345 | Spea_1019 | -96 | 4 | TTGACTTAGATCAC |
Shewanella piezotolerans WP3 | swp_3798 | -94 | 4 | TTGACTTAGATCAC |
Shewanella putrefaciens CN-32 | Sputcn32_1140 | -97 | 4.6 | TTGATCCAGATCAC |
Shewanella sp ANA-3 | Shewana3_3045 | -158 | 4.6 | TTGATCCAGATCAC |
Shewanella sp MR-4 | Shewmr4_2867 | -158 | 4.6 | TTGATCCAGATCAC |
Shewanella sp MR-7 | Shewmr7_2949 | -158 | 4.6 | TTGATCCAGATCAC |
Shewanella sp W3-18-1 | Sputw3181_3024 | -97 | 4.6 | TTGATCCAGATCAC |
Position: -226
Score: 4.6 Sequence: TTGATATAGGTCAA
Locus tag: Sfri_3500
|
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Sfri_3500 | -226 | 4.6 | TTGATATAGGTCAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: SO0579 | ||||
Ortholog function: Predicted serine/threonine protein kinase | ||||
Shewanella amazonensis SB2B | Sama_0541 | -118 | 4.9 | TTGATTTGCATCAA |
Shewanella baltica OS155 | Sbal_0539 | -154 | 4.5 | TTGATGTAAGTCAA |
Shewanella denitrificans OS217 | Sden_0539 | -87 | 4.5 | TTGATGCAGGTCAA |
Shewanella frigidimarina NCIMB 400 | Sfri_3500 | -226 | 4.6 | TTGATATAGGTCAA |
Shewanella halifaxensis HAW-EB4 | Shal_0673 | -123 | 4.8 | TTGATGTGTATCAA |
Shewanella loihica PV-4 | Shew_3263 | -124 | 4.6 | TTGATATAGGTCAA |
Shewanella oneidensis MR-1 | SO0579 | -145 | 4.9 | TTGATATAAATCAA |
Shewanella pealeana ATCC 700345 | Spea_0586 | -123 | 4.8 | TTGATATGCATCAA |
Shewanella piezotolerans WP3 | swp_4517 | -140 | 4.9 | TTGATATACATCAA |
Shewanella putrefaciens CN-32 | Sputcn32_3298 | -152 | 4.3 | TTGATATAAGTCAA |
Shewanella sediminis HAW-EB3 | Ssed_4012 | -185 | 4.6 | TTGATATAGGTCAA |
Shewanella sp ANA-3 | Shewana3_0578 | -152 | 4.9 | TTGATATAAATCAA |
Shewanella sp MR-4 | Shewmr4_0579 | -154 | 4.9 | TTGATATAAATCAA |
Shewanella sp MR-7 | Shewmr7_3451 | -154 | 4.9 | TTGATATAAATCAA |
Shewanella sp W3-18-1 | Sputw3181_0643 | -152 | 4.3 | TTGATATAAGTCAA |
Shewanella woodyi ATCC 51908 | Swoo_4155 | -226 | 4.8 | TTGATGTAGGTCAA |
Position: -121
Score: 4.5 Sequence: GTGATGTGGCTCAT
Locus tag: Sfri_3609
|
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Sfri_3609 | -121 | 4.5 | GTGATGTGGCTCAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: hcp | ||||
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
Shewanella amazonensis SB2B | Sama_0895 | -109 | 4.5 | ATGATCTGCTTCAA |
Shewanella frigidimarina NCIMB 400 | Sfri_3609 | -121 | 4.5 | GTGATGTGGCTCAT |
Shewanella loihica PV-4 | Shew_1069 | -121 | 4.1 | TTGATCCGCTTCAT |
Shewanella sediminis HAW-EB3 | Ssed_1165 | -120 | 4.4 | TTGATCTACTTCAT |
Shewanella woodyi ATCC 51908 | Swoo_1260 | -121 | 4.7 | TTGATCTGTCTCAA |
Position: -73
Score: 5 Sequence: TTGATGTTGATCAA
Position: -67
Score: 4 Sequence: TTGATCAAATTCAA
Locus tag: Sfri_3610
|
||||
Sfri_3610 | -73 | 5 | TTGATGTTGATCAA | |
-67 | 4 | TTGATCAAATTCAA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: Sama_2599 | ||||
Ortholog function: Predicted lipoprotein | ||||
Shewanella amazonensis SB2B | Sama_2599 | -83 | 4.1 | TTGATGAGGATCAC |
Shewanella frigidimarina NCIMB 400 | Sfri_3610 | -73 | 5 | TTGATGTTGATCAA |
Shewanella sediminis HAW-EB3 | Ssed_2168 | -72 | 4.6 | TTGACATAGATCAA |
Shewanella sp MR-4 | Shewmr4_1948 | -82 | 4.3 | TTGATTTACATCAC |
Shewanella sp MR-7 | Shewmr7_2028 | -82 | 4.3 | TTGATTTACATCAC |
Position: -143
Score: 5 Sequence: TTGATCTAGGTCAA
Locus tag: Sfri_3699
|
||||
Sfri_3699 | -143 | 5 | TTGATCTAGGTCAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: hmp | ||||
Ortholog function: Nitric oxide dioxygenase (EC 1.14.12.17) | ||||
Shewanella baltica OS155 | Sbal_1014 | -68 | 4.2 | TTGATCCAAATTAA |
Shewanella frigidimarina NCIMB 400 | Sfri_3699 | -143 | 5 | TTGATCTAGGTCAA |
Shewanella sp ANA-3 | Shewana3_3174 | -68 | 5 | TTGATCCAAATCAA |
Shewanella sp MR-4 | Shewmr4_2996 | -68 | 5 | TTGATCCAAATCAA |
Shewanella sp MR-7 | Shewmr7_3077 | -68 | 5 | TTGATCCAAATCAA |
Position: -249
Score: 4.4 Sequence: AAGATCCAGATCAA
Position: -79
Score: 5 Sequence: TTGATCTAGATCGA
Locus tag: Sfri_3879
|
||||
Sfri_3879 | -249 | 4.4 | AAGATCCAGATCAA | |
-79 | 5 | TTGATCTAGATCGA | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: Sfri_3879 | ||||
Ortholog function: Predicted sodium/sulphate symporter | ||||
Shewanella frigidimarina NCIMB 400 | Sfri_3879 | -249 | 4.4 | AAGATCCAGATCAA |
-79 | 5 | TTGATCTAGATCGA | ||
Shewanella piezotolerans WP3 | swp_0240 | -301 | 4.9 | TAGATCTAGATCAA |
-131 | 5 | TTGATCTGGATCGA | ||
Shewanella sediminis HAW-EB3 | Ssed_0363 | -250 | 4.4 | ACGATCCAGATCAA |
-212 | 4.3 | TTGATCTGACACAA | ||
-80 | 4.4 | TTGATCTCGATCGT | ||
Position: -109
Score: 4.2 Sequence: TTGATGGCGATCAT
Locus tag: Sfri_3882
|
||||
Sfri_3882 | -109 | 4.2 | TTGATGGCGATCAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: oprP | ||||
Ortholog function: Phosphate-specific outer membrane porin | ||||
Shewanella frigidimarina NCIMB 400 | Sfri_3882 | -109 | 4.2 | TTGATGGCGATCAT |
Shewanella piezotolerans WP3 | swp_0235 | -113 | 4.6 | TCGATCTAGATCAT |
Shewanella sediminis HAW-EB3 | Ssed_0367 | -110 | 4.6 | TTGAGCTGGATCAC |