Propagation of NarP regulog to Shewanella frigidimarina NCIMB 400
| Source regulog: | NarP - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Shewanella frigidimarina NCIMB 400 |
| Orthologous TF(s) | Sfri_0620 |
| Regulated genes | 16 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -106
Score: 4.5 Sequence: TATCTCTAAAGTGATA
Locus tag: Sfri_0076
|
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| Sfri_0076 | -106 | 4.5 | TATCTCTAAAGTGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4520 | ||||
| Ortholog function: Coproporphyrinogen III oxidase, oxygen-independent | ||||
| Shewanella oneidensis MR-1 | SO4520 | -95 | 4.4 | TACTCCATTCGAGGTA |
| Shewanella sp ANA-3 | Shewana3_3926 | -95 | 4.4 | TACTCCATACGAGGTA |
| Shewanella sp MR-4 | Shewmr4_3730 | -95 | 4.4 | TACTCCATACGAGGTA |
| Shewanella sp MR-7 | Shewmr7_3801 | -95 | 4.4 | TACTCCATACGAGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0076 | -106 | 4.5 | TATCTCTAAAGTGATA |
| Shewanella loihica PV-4 | Shew_0073 | -106 | 4.3 | TATTCCTTAAGTGATA |
| Shewanella woodyi ATCC 51908 | Swoo_4806 | -107 | 4.8 | TAACTCTAAAGTGGTA |
|
Position: -243
Score: 4.3 Sequence: CATCCCTAAAGAGGTA
Locus tag: Sfri_0503
|
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| Sfri_0503 | -243 | 4.3 | CATCCCTAAAGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp35 | ||||
| Ortholog function: Outer membrane porin, predicted | ||||
| Shewanella oneidensis MR-1 | SO3896 | -255 | 5.2 | TACCTCTTTAGTGGTA |
| Shewanella sp ANA-3 | Shewana3_0733 | -255 | 5.1 | TACCTCTTTAGTAGTA |
| Shewanella sp MR-4 | Shewmr4_3228 | -255 | 5.1 | TACCTCTTTAGTAGTA |
| Shewanella sp MR-7 | Shewmr7_0761 | -255 | 5.1 | TACCTCTTTAGTAGTA |
| Shewanella baltica OS155 | Sbal_3570 | -256 | 4.9 | TACCACTTAAGTAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0503 | -243 | 4.3 | CATCCCTAAAGAGGTA |
| Shewanella loihica PV-4 | Shew_3260 | -261 | 4.9 | TACCCCTTTGGGAGTA |
| Shewanella pealeana ATCC 700345 | Spea_0589 | -260 | 4.6 | CACCTCTTTATAGATA |
| Shewanella halifaxensis HAW-EB4 | Shal_0676 | -260 | 4.8 | TACTCCTTTAGGGATA |
| Shewanella piezotolerans WP3 | swp_4514 | -260 | 5.1 | TACCCCTTTAGGGATA |
| Shewanella sediminis HAW-EB3 | Ssed_4009 | -263 | 4.1 | TACTTCGTTCTAGGTA |
|
Position: -111
Score: 4.5 Sequence: TACCCATTCTGAGGTA
Locus tag: Sfri_0553
|
||||
| Sfri_0553 | -111 | 4.5 | TACCCATTCTGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napA | ||||
| Ortholog function: Periplasmic nitrate reductase precursor (EC 1.7.99.4) | ||||
| Shewanella oneidensis MR-1 | SO0848 | -119 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3148 | -116 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_0795 | -116 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp ANA-3 | Shewana3_3430 | -118 | 4.8 | TACCTCTTGCGAGGTA |
| Shewanella sp MR-4 | Shewmr4_0704 | -118 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp MR-7 | Shewmr7_3318 | -118 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella baltica OS155 | Sbal_3511 | -119 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0553 | -111 | 4.5 | TACCCATTCTGAGGTA |
| Shewanella amazonensis SB2B | Sama_2983 | -105 | 4.8 | TACCTCCTAGTGGGTA |
| Shewanella loihica PV-4 | Shew_3206 | -123 | 4.9 | TACCTCTCAAGAGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0623 | -118 | 4.9 | TACCCCTTGTGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0715 | -119 | 4.7 | TACCCCTTGCGAGGTA |
| Shewanella piezotolerans WP3 | swp_4457 | -111 | 4.9 | TACCCCTTGTGAGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_3957 | -132 | 4.7 | TACCTCTTGTTGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_4110 | -124 | 5 | TACCCCTTACTAGGTA |
|
Position: -188
Score: 5.1 Sequence: TACCCCTTATGGGGTA
Locus tag: Sfri_0621
|
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| Sfri_0621 | -188 | 5.1 | TACCCCTTATGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narQ | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) | ||||
| Shewanella oneidensis MR-1 | SO3981 | -199 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0684 | -162 | 5.2 | TACCTCTTAGGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_3487 | -162 | 5.2 | TACCTCTTAGGAGGTA |
| Shewanella sp ANA-3 | Shewana3_0657 | -163 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella sp MR-4 | Shewmr4_0658 | -164 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella sp MR-7 | Shewmr7_3364 | -164 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella baltica OS155 | Sbal_0793 | -146 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0621 | -188 | 5.1 | TACCCCTTATGGGGTA |
| Shewanella amazonensis SB2B | Sama_0647 | -160 | 4.9 | TACCCATTAAGTGGTA |
| Shewanella loihica PV-4 | Shew_0843 | -161 | 5.1 | TACCCCTTATGGGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0830 | -157 | 5 | TACCTCCTATGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0885 | -159 | 4.7 | TACCTCCAACGAGGTA |
| Shewanella piezotolerans WP3 | swp_3960 | -263 | 5.1 | TACCCCTTATGGGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0930 | -161 | 4.9 | TACCCCTAAGGGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_0971 | -160 | 5.2 | TACCCCTTATGAGGTA |
|
Position: -111
Score: 5 Sequence: TACCCCATAAGGGGTA
Locus tag: Sfri_0622
|
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| Sfri_0622 | -111 | 5 | TACCCCATAAGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) | ||||
| Shewanella oneidensis MR-1 | SO3980 | -95 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0685 | -95 | 5.2 | TACCTCCTAAGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_3486 | -95 | 5.2 | TACCTCCTAAGAGGTA |
| Shewanella sp ANA-3 | Shewana3_0658 | -77 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella sp MR-4 | Shewmr4_0659 | -77 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella sp MR-7 | Shewmr7_3363 | -77 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella baltica OS155 | Sbal_0794 | -95 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0622 | -111 | 5 | TACCCCATAAGGGGTA |
| Shewanella amazonensis SB2B | Sama_0648 | -101 | 5 | TACCACTTAATGGGTA |
| Shewanella loihica PV-4 | Shew_0844 | -102 | 5 | TACCCCATAAGGGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0831 | -101 | 4.9 | TACCTCATAGGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0886 | -98 | 4.7 | TACCTCGTTGGAGGTA |
| Shewanella piezotolerans WP3 | swp_3958 | -96 | 5 | TACCCCATAAGGGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0931 | -100 | 5 | TACCCCCTTAGGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_0972 | -100 | 5 | TACCTCATAAGGGGTA |
|
Position: -191
Score: 4.9 Sequence: TACCTCTTTAGGGTTA
Locus tag: Sfri_0913
|
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| Sfri_0913 | -191 | 4.9 | TACCTCTTTAGGGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrF | ||||
| Ortholog function: Decaheme cytochrome c MtrF | ||||
| Shewanella oneidensis MR-1 | SO1659 | -80 | 4.9 | TACCACTTTATAAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1380 | -77 | 4.9 | TACCACTTTATAAGTA |
| Shewanella sp W3-18-1 | Sputw3181_2721 | -77 | 4.9 | TACCACTTTATAAGTA |
| Shewanella sp ANA-3 | Shewana3_2787 | -77 | 4.9 | TACCACTTTATAAGTA |
| Shewanella sp MR-4 | Shewmr4_2613 | -78 | 4.9 | TACCACTTTATAAGTA |
| Shewanella sp MR-7 | Shewmr7_2680 | -78 | 4.9 | TACCACTTTATAAGTA |
| Shewanella baltica OS155 | Sbal_1478 | -78 | 4.7 | TACCACTTTGTAAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0913 | -191 | 4.9 | TACCTCTTTAGGGTTA |
| Shewanella amazonensis SB2B | Sama_2228 | -77 | 4.5 | TACCACTTTATATATA |
| Shewanella loihica PV-4 | Shew_0918 | -21 | 4.8 | TACCTATAAAGGGATA |
| Shewanella piezotolerans WP3 | swp_0896 | -18 | 4.8 | TACCTATAAAGGGATA |
|
Position: -132
Score: 5 Sequence: TACCTCTATAGTAGTA
Locus tag: Sfri_1334
|
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| Sfri_1334 | -132 | 5 | TACCTCTATAGTAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: Outer membrane protein W precursor | ||||
| Shewanella oneidensis MR-1 | SO1673 | -135 | 4.6 | TACCTAAAAATAAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1392 | -242 | 4.1 | TAACCCTTACTAGGTG |
| -132 | 4.6 | TACCTATAAGTGGGTA | ||
| Shewanella sp W3-18-1 | Sputw3181_2709 | -242 | 4.2 | TAACCCTTATTAGGTG |
| -132 | 4.6 | TACCTATAAGTGGGTA | ||
| Shewanella sp ANA-3 | Shewana3_2775 | -132 | 4.8 | TACCTCAAAATAAGTA |
| Shewanella sp MR-4 | Shewmr4_2601 | -132 | 4.8 | TACCTCAAAATAAGTA |
| Shewanella sp MR-7 | Shewmr7_2668 | -132 | 4.8 | TACCTCAAAATAAGTA |
| Shewanella baltica OS155 | Sbal_1490 | -132 | 4.5 | TACCTATAAGTGAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1334 | -132 | 5 | TACCTCTATAGTAGTA |
| Shewanella amazonensis SB2B | Sama_1371 | -134 | 4.5 | TACCCCAAAGTGGGTA |
| Shewanella pealeana ATCC 700345 | Spea_2787 | -133 | 3.9 | TATCTCGAAGTGGGTA |
| Shewanella piezotolerans WP3 | swp_3395 | -136 | 4.6 | TATCTCTAAATGGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_1469 | -133 | 4 | TATCTATAACTGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_3207 | -133 | 4.1 | TATCTATAAGTGGGTA |
|
Position: -203
Score: 5.3 Sequence: TACCTCTTTATAGGTA
Locus tag: Sfri_1505
|
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| Sfri_1505 | -203 | 5.3 | TACCTCTTTATAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nasA | ||||
| Ortholog function: Cytoplasmic assimilatory nitrate reductase, NasA (EC:1.7.99.4) | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_1505 | -203 | 5.3 | TACCTCTTTATAGGTA |
| Shewanella piezotolerans WP3 | swp_2922 | -197 | 4.3 | TACCTCTTTGTGAGTG |
|
Position: -119
Score: 4.3 Sequence: TACCAATTTGTGAGTA
Locus tag: Sfri_2555
|
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| Sfri_2555 | -119 | 4.3 | TACCAATTTGTGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napE2 | ||||
| Ortholog function: Periplasmic nitrate reductase component NapE | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1901 | -145 | 4.4 | TACCGATTTGGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_2107 | -145 | 4.4 | TACCGATTTGGAGGTA |
| Shewanella sp MR-4 | Shewmr4_1840 | -137 | 4.4 | TACCGATTTGGAGGTA |
| Shewanella sp MR-7 | Shewmr7_2137 | -137 | 4.4 | TACCGATTTGGAGGTA |
| Shewanella baltica OS155 | Sbal_1908 | -144 | 4.6 | TACCAATTTGGAGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2555 | -119 | 4.3 | TACCAATTTGTGAGTA |
| Shewanella amazonensis SB2B | Sama_1620 | -106 | 4.5 | TACCGATTTAGGGGTA |
| Shewanella loihica PV-4 | Shew_1768 | -153 | 4.5 | TACCGATTTAGGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_2682 | -157 | 4.4 | TACCAAGTTAGAGGTA |
|
Position: -150
Score: 4.7 Sequence: TACCCATAAAGGAATA
Locus tag: Sfri_2636
|
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| Sfri_2636 | -150 | 4.7 | TACCCATAAAGGAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omcA | ||||
| Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_2636 | -150 | 4.7 | TACCCATAAAGGAATA |
|
Position: -178
Score: 4.9 Sequence: TACCTCTTTATTAATA
Locus tag: Sfri_2637
|
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| Sfri_2637 | -178 | 4.9 | TACCTCTTTATTAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrC | ||||
| Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC | ||||
| Shewanella oneidensis MR-1 | SO1778 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella putrefaciens CN-32 | Sputcn32_1478 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp W3-18-1 | Sputw3181_2623 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp ANA-3 | Shewana3_2676 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp MR-4 | Shewmr4_2510 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp MR-7 | Shewmr7_2578 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella baltica OS155 | Sbal_1589 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2637 | -178 | 4.9 | TACCTCTTTATTAATA |
| Shewanella amazonensis SB2B | Sama_1208 | -192 | 4.9 | TACCCCTTTTGAAATA |
| -133 | 5 | TACCCCCTATGAGGTA | ||
| Shewanella loihica PV-4 | Shew_2525 | -193 | 5.2 | TACCCCTTTAGAAATA |
| Shewanella pealeana ATCC 700345 | Spea_2698 | -195 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella halifaxensis HAW-EB4 | Shal_2784 | -194 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella piezotolerans WP3 | swp_3278 | -193 | 5.1 | TACCTCTTTATAAATA |
| Shewanella sediminis HAW-EB3 | Ssed_1525 | -205 | 5 | TACCCCTTTATAAATA |
| Shewanella woodyi ATCC 51908 | Swoo_3125 | -218 | 5 | TACCCCTTTATAAATA |
|
Position: -243
Score: 4.6 Sequence: TACCTATATGTAGGTA
Locus tag: Sfri_3686
|
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| Sfri_3686 | -243 | 4.6 | TACCTATATGTAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dmsE | ||||
| Ortholog function: Periplasmic decaheme cytochrome c, DsmE | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3686 | -243 | 4.6 | TACCTATATGTAGGTA |
|
Position: -313
Score: 4.6 Sequence: TACCTCTTTATAACTA
Locus tag: Sfri_3690
|
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| Sfri_3690 | -313 | 4.6 | TACCTCTTTATAACTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fccA | ||||
| Ortholog function: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) | ||||
| Shewanella oneidensis MR-1 | SO0970 | -43 | 4.5 | TATCCCTTATTAAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0905 | -42 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp W3-18-1 | Sputw3181_3267 | -42 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp ANA-3 | Shewana3_3318 | -43 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp MR-4 | Shewmr4_0808 | -43 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp MR-7 | Shewmr7_3215 | -43 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella baltica OS155 | Sbal_0859 | -42 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3690 | -313 | 4.6 | TACCTCTTTATAACTA |
| Shewanella amazonensis SB2B | Sama_0611 | -35 | 5.2 | TACCTCTTTATAAGTA |
| Shewanella loihica PV-4 | Shew_3112 | -268 | 4.5 | TACCTCTTTGTGATTA |
| Shewanella pealeana ATCC 700345 | Spea_0722 | -101 | 4.5 | TACCTCAAAGTGAGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0776 | -101 | 4.3 | TACCTCGAATTGAGTA |
|
Position: -123
Score: 3.9 Sequence: TACCTACAATTGATTA
Locus tag: Sfri_3897
|
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| Sfri_3897 | -123 | 3.9 | TACCTACAATTGATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_3897 | ||||
| Ortholog function: Flavocytochrome c, flavin subunit | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3897 | -123 | 3.9 | TACCTACAATTGATTA |
| Shewanella pealeana ATCC 700345 | Spea_3939 | -158 | 4.6 | TACCTCCAAAGTAATA |
| Shewanella halifaxensis HAW-EB4 | Shal_0331 | -157 | 4.1 | CACTTCTAAAGTAGTA |
| Shewanella piezotolerans WP3 | swp_0220 | -226 | 4.7 | TACTCCTAAAGTAGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0273 | -159 | 4.7 | TACCTCTAAAGTTGTA |