Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NarP regulog to Shewanella frigidimarina NCIMB 400

Reference regulog properties
Source regulog: NarP - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella frigidimarina NCIMB 400
Orthologous TF(s) Sfri_0620
Regulated genes 16
Built upon 249 sites [see more]
Predicted regulatory interactions in Shewanella frigidimarina NCIMB 400
Locus tag Position Score Sequence
Position: -106
Score: 4.5
Sequence: TATCTCTAAAGTGATA
Locus tag: Sfri_0076
Sfri_0076 -106 4.5 TATCTCTAAAGTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4520
Ortholog function: Coproporphyrinogen III oxidase, oxygen-independent
Shewanella oneidensis MR-1 SO4520 -95 4.4 TACTCCATTCGAGGTA
Shewanella sp ANA-3 Shewana3_3926 -95 4.4 TACTCCATACGAGGTA
Shewanella sp MR-4 Shewmr4_3730 -95 4.4 TACTCCATACGAGGTA
Shewanella sp MR-7 Shewmr7_3801 -95 4.4 TACTCCATACGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0076 -106 4.5 TATCTCTAAAGTGATA
Shewanella loihica PV-4 Shew_0073 -106 4.3 TATTCCTTAAGTGATA
Shewanella woodyi ATCC 51908 Swoo_4806 -107 4.8 TAACTCTAAAGTGGTA
Position: -243
Score: 4.3
Sequence: CATCCCTAAAGAGGTA
Locus tag: Sfri_0503
Sfri_0503 -243 4.3 CATCCCTAAAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp35
Ortholog function: Outer membrane porin, predicted
Shewanella oneidensis MR-1 SO3896 -255 5.2 TACCTCTTTAGTGGTA
Shewanella sp ANA-3 Shewana3_0733 -255 5.1 TACCTCTTTAGTAGTA
Shewanella sp MR-4 Shewmr4_3228 -255 5.1 TACCTCTTTAGTAGTA
Shewanella sp MR-7 Shewmr7_0761 -255 5.1 TACCTCTTTAGTAGTA
Shewanella baltica OS155 Sbal_3570 -256 4.9 TACCACTTAAGTAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0503 -243 4.3 CATCCCTAAAGAGGTA
Shewanella loihica PV-4 Shew_3260 -261 4.9 TACCCCTTTGGGAGTA
Shewanella pealeana ATCC 700345 Spea_0589 -260 4.6 CACCTCTTTATAGATA
Shewanella halifaxensis HAW-EB4 Shal_0676 -260 4.8 TACTCCTTTAGGGATA
Shewanella piezotolerans WP3 swp_4514 -260 5.1 TACCCCTTTAGGGATA
Shewanella sediminis HAW-EB3 Ssed_4009 -263 4.1 TACTTCGTTCTAGGTA
Position: -111
Score: 4.5
Sequence: TACCCATTCTGAGGTA
Locus tag: Sfri_0553
Sfri_0553 -111 4.5 TACCCATTCTGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napA
Ortholog function: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Shewanella oneidensis MR-1 SO0848 -119 4.9 TACCTCTTGTGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_3148 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp W3-18-1 Sputw3181_0795 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp ANA-3 Shewana3_3430 -118 4.8 TACCTCTTGCGAGGTA
Shewanella sp MR-4 Shewmr4_0704 -118 4.9 TACCTCTTGTGAGGTA
Shewanella sp MR-7 Shewmr7_3318 -118 4.9 TACCTCTTGTGAGGTA
Shewanella baltica OS155 Sbal_3511 -119 4.9 TACCTCTTGTGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0553 -111 4.5 TACCCATTCTGAGGTA
Shewanella amazonensis SB2B Sama_2983 -105 4.8 TACCTCCTAGTGGGTA
Shewanella loihica PV-4 Shew_3206 -123 4.9 TACCTCTCAAGAGGTA
Shewanella pealeana ATCC 700345 Spea_0623 -118 4.9 TACCCCTTGTGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0715 -119 4.7 TACCCCTTGCGAGGTA
Shewanella piezotolerans WP3 swp_4457 -111 4.9 TACCCCTTGTGAGGTA
Shewanella sediminis HAW-EB3 Ssed_3957 -132 4.7 TACCTCTTGTTGGGTA
Shewanella woodyi ATCC 51908 Swoo_4110 -124 5 TACCCCTTACTAGGTA
Position: -188
Score: 5.1
Sequence: TACCCCTTATGGGGTA
Locus tag: Sfri_0621
Sfri_0621 -188 5.1 TACCCCTTATGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shewanella oneidensis MR-1 SO3981 -199 5.1 TACCTCTTAGGGGGTA
Shewanella putrefaciens CN-32 Sputcn32_0684 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp W3-18-1 Sputw3181_3487 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp ANA-3 Shewana3_0657 -163 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-4 Shewmr4_0658 -164 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-7 Shewmr7_3364 -164 5.1 TACCTCTTAGGGGGTA
Shewanella baltica OS155 Sbal_0793 -146 5.1 TACCTCTTAGGGGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0621 -188 5.1 TACCCCTTATGGGGTA
Shewanella amazonensis SB2B Sama_0647 -160 4.9 TACCCATTAAGTGGTA
Shewanella loihica PV-4 Shew_0843 -161 5.1 TACCCCTTATGGGGTA
Shewanella pealeana ATCC 700345 Spea_0830 -157 5 TACCTCCTATGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0885 -159 4.7 TACCTCCAACGAGGTA
Shewanella piezotolerans WP3 swp_3960 -263 5.1 TACCCCTTATGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0930 -161 4.9 TACCCCTAAGGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0971 -160 5.2 TACCCCTTATGAGGTA
Position: -111
Score: 5
Sequence: TACCCCATAAGGGGTA
Locus tag: Sfri_0622
Sfri_0622 -111 5 TACCCCATAAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewanella oneidensis MR-1 SO3980 -95 5.2 TACCCCCTAAGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_0685 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp W3-18-1 Sputw3181_3486 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp ANA-3 Shewana3_0658 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-4 Shewmr4_0659 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-7 Shewmr7_3363 -77 5.2 TACCCCCTAAGAGGTA
Shewanella baltica OS155 Sbal_0794 -95 5.2 TACCCCCTAAGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0622 -111 5 TACCCCATAAGGGGTA
Shewanella amazonensis SB2B Sama_0648 -101 5 TACCACTTAATGGGTA
Shewanella loihica PV-4 Shew_0844 -102 5 TACCCCATAAGGGGTA
Shewanella pealeana ATCC 700345 Spea_0831 -101 4.9 TACCTCATAGGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0886 -98 4.7 TACCTCGTTGGAGGTA
Shewanella piezotolerans WP3 swp_3958 -96 5 TACCCCATAAGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0931 -100 5 TACCCCCTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0972 -100 5 TACCTCATAAGGGGTA
Position: -191
Score: 4.9
Sequence: TACCTCTTTAGGGTTA
Locus tag: Sfri_0913
Sfri_0913 -191 4.9 TACCTCTTTAGGGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrF
Ortholog function: Decaheme cytochrome c MtrF
Shewanella oneidensis MR-1 SO1659 -80 4.9 TACCACTTTATAAGTA
Shewanella putrefaciens CN-32 Sputcn32_1380 -77 4.9 TACCACTTTATAAGTA
Shewanella sp W3-18-1 Sputw3181_2721 -77 4.9 TACCACTTTATAAGTA
Shewanella sp ANA-3 Shewana3_2787 -77 4.9 TACCACTTTATAAGTA
Shewanella sp MR-4 Shewmr4_2613 -78 4.9 TACCACTTTATAAGTA
Shewanella sp MR-7 Shewmr7_2680 -78 4.9 TACCACTTTATAAGTA
Shewanella baltica OS155 Sbal_1478 -78 4.7 TACCACTTTGTAAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0913 -191 4.9 TACCTCTTTAGGGTTA
Shewanella amazonensis SB2B Sama_2228 -77 4.5 TACCACTTTATATATA
Shewanella loihica PV-4 Shew_0918 -21 4.8 TACCTATAAAGGGATA
Shewanella piezotolerans WP3 swp_0896 -18 4.8 TACCTATAAAGGGATA
Position: -132
Score: 5
Sequence: TACCTCTATAGTAGTA
Locus tag: Sfri_1334
Sfri_1334 -132 5 TACCTCTATAGTAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella oneidensis MR-1 SO1673 -135 4.6 TACCTAAAAATAAGTA
Shewanella putrefaciens CN-32 Sputcn32_1392 -242 4.1 TAACCCTTACTAGGTG
-132 4.6 TACCTATAAGTGGGTA
Shewanella sp W3-18-1 Sputw3181_2709 -242 4.2 TAACCCTTATTAGGTG
-132 4.6 TACCTATAAGTGGGTA
Shewanella sp ANA-3 Shewana3_2775 -132 4.8 TACCTCAAAATAAGTA
Shewanella sp MR-4 Shewmr4_2601 -132 4.8 TACCTCAAAATAAGTA
Shewanella sp MR-7 Shewmr7_2668 -132 4.8 TACCTCAAAATAAGTA
Shewanella baltica OS155 Sbal_1490 -132 4.5 TACCTATAAGTGAGTA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -132 5 TACCTCTATAGTAGTA
Shewanella amazonensis SB2B Sama_1371 -134 4.5 TACCCCAAAGTGGGTA
Shewanella pealeana ATCC 700345 Spea_2787 -133 3.9 TATCTCGAAGTGGGTA
Shewanella piezotolerans WP3 swp_3395 -136 4.6 TATCTCTAAATGGGTA
Shewanella sediminis HAW-EB3 Ssed_1469 -133 4 TATCTATAACTGGGTA
Shewanella woodyi ATCC 51908 Swoo_3207 -133 4.1 TATCTATAAGTGGGTA
Position: -203
Score: 5.3
Sequence: TACCTCTTTATAGGTA
Locus tag: Sfri_1505
Sfri_1505 -203 5.3 TACCTCTTTATAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasA
Ortholog function: Cytoplasmic assimilatory nitrate reductase, NasA (EC:1.7.99.4)
Shewanella frigidimarina NCIMB 400 Sfri_1505 -203 5.3 TACCTCTTTATAGGTA
Shewanella piezotolerans WP3 swp_2922 -197 4.3 TACCTCTTTGTGAGTG
Position: -119
Score: 4.3
Sequence: TACCAATTTGTGAGTA
Locus tag: Sfri_2555
Sfri_2555 -119 4.3 TACCAATTTGTGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napE2
Ortholog function: Periplasmic nitrate reductase component NapE
Shewanella putrefaciens CN-32 Sputcn32_1901 -145 4.4 TACCGATTTGGAGGTA
Shewanella sp W3-18-1 Sputw3181_2107 -145 4.4 TACCGATTTGGAGGTA
Shewanella sp MR-4 Shewmr4_1840 -137 4.4 TACCGATTTGGAGGTA
Shewanella sp MR-7 Shewmr7_2137 -137 4.4 TACCGATTTGGAGGTA
Shewanella baltica OS155 Sbal_1908 -144 4.6 TACCAATTTGGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_2555 -119 4.3 TACCAATTTGTGAGTA
Shewanella amazonensis SB2B Sama_1620 -106 4.5 TACCGATTTAGGGGTA
Shewanella loihica PV-4 Shew_1768 -153 4.5 TACCGATTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_2682 -157 4.4 TACCAAGTTAGAGGTA
Position: -150
Score: 4.7
Sequence: TACCCATAAAGGAATA
Locus tag: Sfri_2636
Sfri_2636 -150 4.7 TACCCATAAAGGAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omcA
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shewanella frigidimarina NCIMB 400 Sfri_2636 -150 4.7 TACCCATAAAGGAATA
Position: -178
Score: 4.9
Sequence: TACCTCTTTATTAATA
Locus tag: Sfri_2637
Sfri_2637 -178 4.9 TACCTCTTTATTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -204 5.2 TACCTCTTTAGAAATA
Shewanella putrefaciens CN-32 Sputcn32_1478 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp W3-18-1 Sputw3181_2623 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp ANA-3 Shewana3_2676 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-4 Shewmr4_2510 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-7 Shewmr7_2578 -203 5.2 TACCTCTTTAGAAATA
Shewanella baltica OS155 Sbal_1589 -204 5.2 TACCTCTTTAGAAATA
Shewanella frigidimarina NCIMB 400 Sfri_2637 -178 4.9 TACCTCTTTATTAATA
Shewanella amazonensis SB2B Sama_1208 -192 4.9 TACCCCTTTTGAAATA
-133 5 TACCCCCTATGAGGTA
Shewanella loihica PV-4 Shew_2525 -193 5.2 TACCCCTTTAGAAATA
Shewanella pealeana ATCC 700345 Spea_2698 -195 5.2 TACCTCTTTAGAAATA
Shewanella halifaxensis HAW-EB4 Shal_2784 -194 5.2 TACCTCTTTAGAAATA
Shewanella piezotolerans WP3 swp_3278 -193 5.1 TACCTCTTTATAAATA
Shewanella sediminis HAW-EB3 Ssed_1525 -205 5 TACCCCTTTATAAATA
Shewanella woodyi ATCC 51908 Swoo_3125 -218 5 TACCCCTTTATAAATA
Position: -243
Score: 4.6
Sequence: TACCTATATGTAGGTA
Locus tag: Sfri_3686
Sfri_3686 -243 4.6 TACCTATATGTAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsE
Ortholog function: Periplasmic decaheme cytochrome c, DsmE
Shewanella frigidimarina NCIMB 400 Sfri_3686 -243 4.6 TACCTATATGTAGGTA
Position: -313
Score: 4.6
Sequence: TACCTCTTTATAACTA
Locus tag: Sfri_3690
Sfri_3690 -313 4.6 TACCTCTTTATAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fccA
Ortholog function: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Shewanella oneidensis MR-1 SO0970 -43 4.5 TATCCCTTATTAAGTA
Shewanella putrefaciens CN-32 Sputcn32_0905 -42 4.7 TAACCCTTATTAAGTA
Shewanella sp W3-18-1 Sputw3181_3267 -42 4.7 TAACCCTTATTAAGTA
Shewanella sp ANA-3 Shewana3_3318 -43 4.7 TAACCCTTATTAAGTA
Shewanella sp MR-4 Shewmr4_0808 -43 4.7 TAACCCTTATTAAGTA
Shewanella sp MR-7 Shewmr7_3215 -43 4.7 TAACCCTTATTAAGTA
Shewanella baltica OS155 Sbal_0859 -42 4.7 TAACCCTTATTAAGTA
Shewanella frigidimarina NCIMB 400 Sfri_3690 -313 4.6 TACCTCTTTATAACTA
Shewanella amazonensis SB2B Sama_0611 -35 5.2 TACCTCTTTATAAGTA
Shewanella loihica PV-4 Shew_3112 -268 4.5 TACCTCTTTGTGATTA
Shewanella pealeana ATCC 700345 Spea_0722 -101 4.5 TACCTCAAAGTGAGTA
Shewanella halifaxensis HAW-EB4 Shal_0776 -101 4.3 TACCTCGAATTGAGTA
Position: -123
Score: 3.9
Sequence: TACCTACAATTGATTA
Locus tag: Sfri_3897
Sfri_3897 -123 3.9 TACCTACAATTGATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_3897
Ortholog function: Flavocytochrome c, flavin subunit
Shewanella frigidimarina NCIMB 400 Sfri_3897 -123 3.9 TACCTACAATTGATTA
Shewanella pealeana ATCC 700345 Spea_3939 -158 4.6 TACCTCCAAAGTAATA
Shewanella halifaxensis HAW-EB4 Shal_0331 -157 4.1 CACTTCTAAAGTAGTA
Shewanella piezotolerans WP3 swp_0220 -226 4.7 TACTCCTAAAGTAGTA
Shewanella sediminis HAW-EB3 Ssed_0273 -159 4.7 TACCTCTAAAGTTGTA
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