Propagation of GcvA regulog to Pseudoalteromonas haloplanktis TAC125
| Source regulog: | GcvA - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Pseudoalteromonas haloplanktis TAC125 |
| Orthologous TF(s) | PSHAa1064 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -31
Score: 5.2 Sequence: ATAAGAAAAACTAAT
Locus tag: PSHAa1064
|
||||
| PSHAa1064 | -31 | 5.2 | ATAAGAAAAACTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gcvA | ||||
| Ortholog function: Glycine cleavage system transcriptional activator GcvA | ||||
| Shewanella oneidensis MR-1 | SO_1533 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1282 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella sp W3-18-1 | Sputw3181_2824 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella sp ANA-3 | Shewana3_2894 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella sp MR-4 | Shewmr4_2724 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella sp MR-7 | Shewmr7_2795 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella baltica OS155 | Sbal_1364 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella denitrificans OS217 | Sden_2565 | -54 | 5.2 | ATTAGAAAAACTTAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2783 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella amazonensis SB2B | Sama_2429 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella loihica PV-4 | Shew_2764 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella pealeana ATCC 700345 | Spea_2984 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3073 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella piezotolerans WP3 | swp_3612 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella sediminis HAW-EB3 | Ssed_3322 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella woodyi ATCC 51908 | Swoo_3471 | -38 | 5.6 | ATTAGAAAAACTAAT |
|
Position: -161
Score: 5.2 Sequence: ATTAGTTTTTCTTAT
Locus tag: PSHAa1362
|
||||
| PSHAa1362 | -161 | 5.2 | ATTAGTTTTTCTTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3342 | ||||
| Ortholog function: putative membrane protein | ||||
| Shewanella oneidensis MR-1 | SO_3342 | -99 | 5.1 | ATTATATATTCTAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2677 | -85 | 5 | ATTATTTTTTCTAAT |
| Shewanella sp W3-18-1 | Sputw3181_1334 | -85 | 5 | ATTATTTTTTCTAAT |
| Shewanella sp ANA-3 | Shewana3_1204 | -99 | 4.8 | ATGAAATATTCTAAT |
| -77 | 4.2 | TTTAAATAATCTCAT | ||
| Shewanella sp MR-4 | Shewmr4_1203 | -99 | 5.1 | ATTAAATATTCTAAT |
| -77 | 4.2 | TTTAAATAATCTCAT | ||
| Shewanella sp MR-7 | Shewmr7_1274 | -99 | 5.1 | ATTAAATATTCTAAT |
| -77 | 4.2 | TTTAAATAATCTCAT | ||
| Shewanella baltica OS155 | Sbal_3015 | -97 | 5 | ATTAATTTTTCTAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0596 | -171 | 4.3 | ATTATTAAAACTATT |
| -96 | 5 | ATTAGATTAATTAAT | ||
| Shewanella amazonensis SB2B | Sama_2463 | -113 | 4.6 | ATAATAAAAACTAAT |
| Shewanella loihica PV-4 | Shew_1154 | -97 | 5.1 | ATTAAAAAATCTAAT |
| Shewanella pealeana ATCC 700345 | Spea_1141 | -96 | 5.1 | ATTAGAAAATGTAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1186 | -96 | 5.1 | ATTAGAAAATATAAT |
| Shewanella piezotolerans WP3 | swp_1289 | -95 | 5 | ATTAGTTTTTTTAAT |
| Shewanella sediminis HAW-EB3 | Ssed_1246 | -97 | 5.1 | ATTAAAATATCTAAT |
| Shewanella woodyi ATCC 51908 | Swoo_1346 | -173 | 4.6 | ATTAGCTAAACTAAA |
| -98 | 5.6 | ATTAGAAAAACTAAT | ||