Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of GcvA regulog to Pseudoalteromonas haloplanktis TAC125

Reference regulog properties
Source regulog: GcvA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Glycine metabolism
Effector: Glycine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas haloplanktis TAC125
Orthologous TF(s) PSHAa1064
Regulated genes 3
Built upon 108 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas haloplanktis TAC125
Locus tag Position Score Sequence
Position: -31
Score: 5.2
Sequence: ATAAGAAAAACTAAT
Locus tag: PSHAa1064
PSHAa1064 -31 5.2 ATAAGAAAAACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gcvA
Ortholog function: Glycine cleavage system transcriptional activator GcvA
Shewanella oneidensis MR-1 SO_1533 -38 5.6 ATTAGAAAAACTAAT
Shewanella putrefaciens CN-32 Sputcn32_1282 -38 5.6 ATTAGAAAAACTAAT
Shewanella sp W3-18-1 Sputw3181_2824 -38 5.6 ATTAGAAAAACTAAT
Shewanella sp ANA-3 Shewana3_2894 -38 5.6 ATTAGAAAAACTAAT
Shewanella sp MR-4 Shewmr4_2724 -38 5.6 ATTAGAAAAACTAAT
Shewanella sp MR-7 Shewmr7_2795 -38 5.6 ATTAGAAAAACTAAT
Shewanella baltica OS155 Sbal_1364 -38 5.6 ATTAGAAAAACTAAT
Shewanella denitrificans OS217 Sden_2565 -54 5.2 ATTAGAAAAACTTAT
Shewanella frigidimarina NCIMB 400 Sfri_2783 -38 5.6 ATTAGAAAAACTAAT
Shewanella amazonensis SB2B Sama_2429 -38 5.6 ATTAGAAAAACTAAT
Shewanella loihica PV-4 Shew_2764 -38 5.6 ATTAGAAAAACTAAT
Shewanella pealeana ATCC 700345 Spea_2984 -38 5.6 ATTAGAAAAACTAAT
Shewanella halifaxensis HAW-EB4 Shal_3073 -38 5.6 ATTAGAAAAACTAAT
Shewanella piezotolerans WP3 swp_3612 -38 5.6 ATTAGAAAAACTAAT
Shewanella sediminis HAW-EB3 Ssed_3322 -38 5.6 ATTAGAAAAACTAAT
Shewanella woodyi ATCC 51908 Swoo_3471 -38 5.6 ATTAGAAAAACTAAT
Position: -161
Score: 5.2
Sequence: ATTAGTTTTTCTTAT
Locus tag: PSHAa1362
PSHAa1362 -161 5.2 ATTAGTTTTTCTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3342
Ortholog function: putative membrane protein
Shewanella oneidensis MR-1 SO_3342 -99 5.1 ATTATATATTCTAAT
Shewanella putrefaciens CN-32 Sputcn32_2677 -85 5 ATTATTTTTTCTAAT
Shewanella sp W3-18-1 Sputw3181_1334 -85 5 ATTATTTTTTCTAAT
Shewanella sp ANA-3 Shewana3_1204 -99 4.8 ATGAAATATTCTAAT
-77 4.2 TTTAAATAATCTCAT
Shewanella sp MR-4 Shewmr4_1203 -99 5.1 ATTAAATATTCTAAT
-77 4.2 TTTAAATAATCTCAT
Shewanella sp MR-7 Shewmr7_1274 -99 5.1 ATTAAATATTCTAAT
-77 4.2 TTTAAATAATCTCAT
Shewanella baltica OS155 Sbal_3015 -97 5 ATTAATTTTTCTAAT
Shewanella frigidimarina NCIMB 400 Sfri_0596 -171 4.3 ATTATTAAAACTATT
-96 5 ATTAGATTAATTAAT
Shewanella amazonensis SB2B Sama_2463 -113 4.6 ATAATAAAAACTAAT
Shewanella loihica PV-4 Shew_1154 -97 5.1 ATTAAAAAATCTAAT
Shewanella pealeana ATCC 700345 Spea_1141 -96 5.1 ATTAGAAAATGTAAT
Shewanella halifaxensis HAW-EB4 Shal_1186 -96 5.1 ATTAGAAAATATAAT
Shewanella piezotolerans WP3 swp_1289 -95 5 ATTAGTTTTTTTAAT
Shewanella sediminis HAW-EB3 Ssed_1246 -97 5.1 ATTAAAATATCTAAT
Shewanella woodyi ATCC 51908 Swoo_1346 -173 4.6 ATTAGCTAAACTAAA
-98 5.6 ATTAGAAAAACTAAT