Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of SoxR regulog to Shewanella denitrificans OS217

Reference regulog properties
Source regulog: SoxR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Superoxide stress response
Effector: Paraquat
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella denitrificans OS217
Orthologous TF(s) Sden_2125
Regulated genes 3
Built upon 12 sites [see more]
Predicted regulatory interactions in Shewanella denitrificans OS217
Locus tag Position Score Sequence
Position: -61
Score: 7
Sequence: ACCTCAAGTTAGCTTGAGCT
Locus tag: Sden_0647
Sden_0647 -61 7 ACCTCAAGTTAGCTTGAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_0647
Ortholog function: Endoribonuclease L-PSP
Shewanella denitrificans OS217 Sden_0647 -61 7 ACCTCAAGTTAGCTTGAGCT
Position: -56
Score: 7.3
Sequence: ACCTCAAGCTAACTTGAGGT
Locus tag: Sden_2124
Sden_2124 -56 7.3 ACCTCAAGCTAACTTGAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: PF00903
Ortholog function: Glyoxalase/bleomycin resistance protein/dioxygenase
Shewanella denitrificans OS217 Sden_2124 -56 7.3 ACCTCAAGCTAACTTGAGGT
Shewanella frigidimarina NCIMB 400 Sfri_1566 -57 7 ACCTCAAGTTAGCTTTAGGT
Position: -116
Score: 7.3
Sequence: ACCTCAAGTTAGCTTGAGGT
Locus tag: Sden_2125
Sden_2125 -116 7.3 ACCTCAAGTTAGCTTGAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: soxR
Ortholog function: Redox-sensitive transcriptional activator, MerR family
Shewanella denitrificans OS217 Sden_2125 -116 7.3 ACCTCAAGTTAGCTTGAGGT
Shewanella frigidimarina NCIMB 400 Sfri_1565 -64 7 ACCTAAAGCTAACTTGAGGT
Shewanella piezotolerans WP3 swp_2307 -49 6 ATCTCAAGTTAACTTTAGAT
© 2009-2020 RegPrecise