Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of PdhR regulog to Pseudoalteromonas tunicata D2

Reference regulog properties
Source regulog: PdhR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Pyruvate metabolism
Effector: Pyruvate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas tunicata D2
Orthologous TF(s) PTD2_08454
Regulated genes 2
Built upon 109 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas tunicata D2
Locus tag Position Score Sequence
Position: -332
Score: 5.7
Sequence: TTTTGGTCTGACCAATT
Position: -137
Score: 5.9
Sequence: AATTGGTTTTACCAATT
Locus tag: PTD2_14632
PTD2_14632 -332 5.7 TTTTGGTCTGACCAATT
-137 5.9 AATTGGTTTTACCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oadG
Ortholog function: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Shewanella putrefaciens CN-32 Sputcn32_1029 -246 5.6 ACATGGTAAGACCAATT
Shewanella sp W3-18-1 Sputw3181_3136 -246 5.6 ACATGGTAAGACCAATT
Shewanella sp ANA-3 Shewana3_3166 -111 6.4 AATTGGTCTTACCAATT
Shewanella sp MR-4 Shewmr4_2987 -79 6.4 AATTGGTCTTACCAATT
Shewanella sp MR-7 Shewmr7_3069 -110 6.4 AATTGGTCTTACCAATT
Shewanella baltica OS155 Sbal_1024 -251 6.1 TATTGGTAAGACCAATT
Shewanella frigidimarina NCIMB 400 Sfri_1065 -299 5.7 TTTTGGTAAGACCAATT
Shewanella amazonensis SB2B Sama_1051 -169 6.1 TATTGGTAAGACCAATT
Shewanella loihica PV-4 Shew_1219 -202 6 ATTTGGTAAGACCAATT
Shewanella pealeana ATCC 700345 Spea_1198 -195 5.2 TTATGGTATGACCAATT
Shewanella halifaxensis HAW-EB4 Shal_1235 -196 4.7 TTATGGTACGACCAATT
Shewanella piezotolerans WP3 swp_1378 -258 6.1 TATTGGTATGACCAATT
Shewanella sediminis HAW-EB3 Ssed_1320 -148 6.1 TATTGGTATGACCAATT
Shewanella woodyi ATCC 51908 Swoo_3337 -243 5.7 TTTTGGTATGACCAATT