Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NagR regulog to Pseudoalteromonas tunicata D2

Reference regulog properties
Source regulog: NagR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas tunicata D2
Orthologous TF(s) PTD2_17625
Regulated genes 7
Built upon 105 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas tunicata D2
Locus tag Position Score Sequence
Position: -1
Score: 6.1
Sequence: AATGACATCGCTGTCATT
Locus tag: PTD2_07939
PTD2_07939 -1 6.1 AATGACATCGCTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0854
Ortholog function: Type IV pilus biogenesis protein PilE
Shewanella oneidensis MR-1 SO_0854 -83 5.7 CATGACAACGTTGTCAAA
Shewanella sp ANA-3 Shewana3_3424 -91 5.4 TATGACAACGTTGTCAAA
Shewanella sp MR-4 Shewmr4_0710 -91 5.4 TATGACAACGTTGTCAAA
Shewanella sp MR-7 Shewmr7_3312 -91 5.4 TATGACAACGTTGTCAAA
Position: -237
Score: 6.2
Sequence: AATGACAACGCTGTCAAC
Position: -204
Score: 5.6
Sequence: TTTGACACCGTTGTCATC
Locus tag: PTD2_17625
PTD2_17625 -237 6.2 AATGACAACGCTGTCAAC
-204 5.6 TTTGACACCGTTGTCATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagR
Ortholog function: Transcriptional regulator of N-acetylglucosamine utilization, LacI family
Shewanella sp ANA-3 Shewana3_3122 -96 5.1 GCTGACAACGCTGTCGGC
Shewanella sp MR-4 Shewmr4_2943 -96 5.1 GCTGACAACGCTGTCGGC
Shewanella sp MR-7 Shewmr7_3025 -96 5.1 GCTGACAACGCTGTCGGC
Shewanella denitrificans OS217 Sden_2709 -301 6.2 AATGACAACGCTGTCATG
Position: -117
Score: 6.4
Sequence: AATGACAACGCTGTCATT
Locus tag: PTD2_18190
PTD2_18190 -117 6.4 AATGACAACGCTGTCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagK
Ortholog function: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59)
Shewanella oneidensis MR-1 SO_3507 -115 6.4 AATGACAACGCTGTCATT
Shewanella putrefaciens CN-32 Sputcn32_1076 -90 6.4 AATGACAACGCTGTCATC
Shewanella sp W3-18-1 Sputw3181_3089 -90 6.4 AATGACAACGCTGTCATC
Shewanella sp ANA-3 Shewana3_3114 -114 6.4 AATGACAACGCTGTCATT
Shewanella sp MR-4 Shewmr4_2935 -114 6.4 AATGACAACGCTGTCATT
Shewanella sp MR-7 Shewmr7_3017 -114 6.4 AATGACAACGCTGTCATT
Shewanella baltica OS155 Sbal_1084 -113 6.4 AATGACAACGCTGTCATT
Shewanella denitrificans OS217 Sden_2706 -101 6.4 AATGACAACGCTGTCATT
Shewanella amazonensis SB2B Sama_0944 -105 6.4 AATGACAACGCTGTCATT
Shewanella loihica PV-4 Shew_1116 -106 6.4 AATGACAGCGTTGTCATT
Shewanella pealeana ATCC 700345 Spea_1101 -123 6.4 AATGACAACGCTGTCATT
Shewanella halifaxensis HAW-EB4 Shal_1149 -124 6.4 AATGACAACGCTGTCATT
Shewanella piezotolerans WP3 swp_3703 -106 6.4 AATGACAACGCTGTCATT
Shewanella sediminis HAW-EB3 Ssed_1212 -106 6.4 AATGACAACGCTGTCATT
Shewanella woodyi ATCC 51908 Swoo_1312 -108 6.4 AATGACAACGCTGTCATT
© 2009-2020 RegPrecise