Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of MalR regulog to Pseudoalteromonas tunicata D2

Reference regulog properties
Source regulog: MalR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Maltodextrin utilization
Effector: Maltose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Pseudoalteromonas tunicata D2
Orthologous TF(s) PTD2_18715
Regulated genes 3
Built upon 67 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas tunicata D2
Locus tag Position Score Sequence
Position: -82
Score: 6
Sequence: TGTGAATACGTATGCAAG
Locus tag: PTD2_01461
PTD2_01461 -82 6 TGTGAATACGTATGCAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: susB
Ortholog function: Alpha-glucosidase (EC 3.2.1.20)
Shewanella oneidensis MR-1 SO_2450 -90 5.4 GTGGAATACGTATGCAAG
Shewanella sp ANA-3 Shewana3_1931 -90 6 GGTGAATACGTATGCAAA
Shewanella sp MR-4 Shewmr4_1876 -90 6 GGTGAATACGTATGCAAA
Shewanella sp MR-7 Shewmr7_2102 -90 6 GGTGAATACGTATGCAAA
Shewanella baltica OS155 Sbal_2329 -90 5.9 GGTGAATACGTATGCAGG
Shewanella denitrificans OS217 Sden_2002 -100 5.7 CCTGAATACGTATGTAGT
Shewanella frigidimarina NCIMB 400 Sfri_1777 -92 6.1 ACTGAATACGTATGCAAA
Shewanella amazonensis SB2B Sama_1108 -89 6 GCTGAATACGTATGCAGC
Shewanella loihica PV-4 Shew_1876 -164 5.9 GGTGAATACGTATGCAGC
Shewanella piezotolerans WP3 swp_2676 -111 6.1 TTTGAATACGTATGCAAG
Position: -82
Score: 6.1
Sequence: ACTGAATACGTATGCAAT
Locus tag: PTD2_18700
PTD2_18700 -82 6.1 ACTGAATACGTATGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amy2
Ortholog function: Alpha-amylase (EC 3.2.1.1)
Shewanella sp ANA-3 Shewana3_2314 -353 6.2 CCTGCATACGTATGCAAA
-204 6.1 ATTGAATACGTATGCACA
Shewanella sp MR-7 Shewmr7_2212 -353 6.2 CCTGCATACGTATGCAAA
-204 6.1 ATTGAATACGTATGCACA
Shewanella denitrificans OS217 Sden_2032 -354 6.2 ACTGCATACGTATGCAAA
-205 6.1 ATTGAATACGTATGCATA
Shewanella frigidimarina NCIMB 400 Sfri_1784 -375 6.2 CCTGCATACGTATGCAAA
-226 6 GTTGAATACGTATGCATA
Shewanella amazonensis SB2B Sama_1659 -356 6.1 GCTGCATACGTATGCACA
-206 6.1 TTTGAATACGTATGCACT
Shewanella loihica PV-4 Shew_1886 -343 6.2 ACTGCATACGTATGCAAA
-192 6.1 TTTGAATACGTATGCATA
Shewanella woodyi ATCC 51908 Swoo_2206 -345 6.2 TCTGCATACGTATGCATA
-194 6.1 TTTGAATACGTATGCATA
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