Propagation of GcvA regulog to Shewanella baltica OS155
Source regulog: | GcvA - Shewanellaceae |
Regulator type: | Transcription factor |
Regulator family: | LysR |
Regulation mode: | activator (repressor) |
Biological process: | Glycine metabolism |
Effector: | Glycine |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Shewanella baltica OS155 |
Orthologous TF(s) | Sbal_1364 |
Regulated genes | 7 |
Locus tag | Position | Score | Sequence | |
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Position: -148
Score: 5 Sequence: ATTAGTTTTTATAAT
Locus tag: Sbal_0058
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Sbal_0058 | -148 | 5 | ATTAGTTTTTATAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kbl | ||||
Ortholog function: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) | ||||
Shewanella oneidensis MR-1 | SO_4674 | -148 | 5 | ATTAGTTTTTATAAT |
Shewanella putrefaciens CN-32 | Sputcn32_3901 | -148 | 5 | ATTAGTTTTTATAAT |
Shewanella sp W3-18-1 | Sputw3181_0050 | -148 | 5 | ATTAGTTTTTATAAT |
Shewanella sp ANA-3 | Shewana3_4104 | -148 | 5 | ATTAGTTTTTATAAT |
Shewanella sp MR-4 | Shewmr4_3900 | -148 | 5 | ATTAGTTTTTATAAT |
Shewanella sp MR-7 | Shewmr7_3992 | -148 | 5 | ATTAGTTTTTATAAT |
Shewanella baltica OS155 | Sbal_0058 | -148 | 5 | ATTAGTTTTTATAAT |
Shewanella denitrificans OS217 | Sden_3615 | -140 | 5.7 | ATTAGAATTTCTAAT |
Shewanella frigidimarina NCIMB 400 | Sfri_3938 | -191 | 5 | ATTAGTTTTTTTAAT |
Shewanella amazonensis SB2B | Sama_0098 | -150 | 4.6 | ATTAGTTTTTTTTAT |
Shewanella pealeana ATCC 700345 | Spea_0107 | -147 | 5.6 | ATTAGTTTAACTAAT |
Shewanella halifaxensis HAW-EB4 | Shal_4215 | -147 | 5.2 | ATTAGTTTAGCTAAT |
Shewanella piezotolerans WP3 | swp_5067 | -148 | 5.6 | ATTAGTTTAACTAAT |
Shewanella sediminis HAW-EB3 | Ssed_0101 | -148 | 4.7 | ATTAGTTTTATTCAT |
Shewanella woodyi ATCC 51908 | Swoo_0065 | -148 | 4.6 | ATTAGTTTTTTTTAT |
Position: -348
Score: 5.5 Sequence: ATGAGAAAATCTAAT
Locus tag: Sbal_0617
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Sbal_0617 | -348 | 5.5 | ATGAGAAAATCTAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: gcvT | ||||
Ortholog function: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) | ||||
Shewanella oneidensis MR-1 | SO_0779 | -296 | 5.5 | ATGAGAAAATCTAAT |
Shewanella putrefaciens CN-32 | Sputcn32_3211 | -152 | 5.5 | ATGAGAAAATCTAAT |
Shewanella sp W3-18-1 | Sputw3181_0730 | -152 | 5.5 | ATGAGAAAATCTAAT |
Shewanella sp ANA-3 | Shewana3_3501 | -296 | 5.5 | ATGAGAAAATCTAAT |
Shewanella sp MR-4 | Shewmr4_3331 | -298 | 5.5 | ATGAGAAAATCTAAT |
Shewanella sp MR-7 | Shewmr7_0622 | -297 | 5.5 | ATGAGAAAATCTAAT |
Shewanella baltica OS155 | Sbal_0617 | -348 | 5.5 | ATGAGAAAATCTAAT |
Shewanella denitrificans OS217 | Sden_0833 | -142 | 5.6 | ATTAGTAAAACTAAT |
Shewanella frigidimarina NCIMB 400 | Sfri_3151 | -131 | 5.2 | ATTAGCTAAACTAAT |
Shewanella amazonensis SB2B | Sama_2721 | -141 | 5.2 | ATAAGAAAAACTAAT |
Shewanella loihica PV-4 | Shew_3064 | -371 | 4.8 | ATGAGAAAAAGTAAT |
Shewanella pealeana ATCC 700345 | Spea_3303 | -233 | 5.4 | ATGAGAAAAACTAAT |
Shewanella halifaxensis HAW-EB4 | Shal_3375 | -213 | 5.4 | ATGAGAAAAACTAAT |
Shewanella piezotolerans WP3 | swp_0913 | -163 | 5.4 | ATGAGAAAAACTAAT |
Shewanella sediminis HAW-EB3 | Ssed_3675 | -213 | 4.8 | ATGAGAAAAAGTAAT |
Shewanella woodyi ATCC 51908 | Swoo_3969 | -229 | 4.8 | ATGAGAAAAAGTAAT |
Position: -109
Score: 5.6 Sequence: ATTAGTATAACTAAT
Locus tag: Sbal_0787
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Sbal_0787 | -109 | 5.6 | ATTAGTATAACTAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: SO3987 | ||||
Ortholog function: hypothetical protein | ||||
Shewanella oneidensis MR-1 | SO_3987 | -109 | 5.6 | ATTAGTATAACTAAT |
Shewanella putrefaciens CN-32 | Sputcn32_0679 | -109 | 5.6 | ATTAGTATAACTAAT |
Shewanella sp W3-18-1 | Sputw3181_3492 | -109 | 5.6 | ATTAGTATAACTAAT |
Shewanella sp ANA-3 | Shewana3_0651 | -109 | 5.6 | ATTAGTATAACTAAT |
Shewanella sp MR-4 | Shewmr4_0652 | -109 | 5.6 | ATTAGTATAACTAAT |
Shewanella sp MR-7 | Shewmr7_3370 | -109 | 5.6 | ATTAGTATAACTAAT |
Shewanella baltica OS155 | Sbal_0787 | -109 | 5.6 | ATTAGTATAACTAAT |
Position: -38
Score: 5.6 Sequence: ATTAGAAAAACTAAT
Locus tag: Sbal_1364
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Sbal_1364 | -38 | 5.6 | ATTAGAAAAACTAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: gcvA | ||||
Ortholog function: Glycine cleavage system transcriptional activator GcvA | ||||
Shewanella oneidensis MR-1 | SO_1533 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella putrefaciens CN-32 | Sputcn32_1282 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella sp W3-18-1 | Sputw3181_2824 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella sp ANA-3 | Shewana3_2894 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella sp MR-4 | Shewmr4_2724 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella sp MR-7 | Shewmr7_2795 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella baltica OS155 | Sbal_1364 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella denitrificans OS217 | Sden_2565 | -54 | 5.2 | ATTAGAAAAACTTAT |
Shewanella frigidimarina NCIMB 400 | Sfri_2783 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella amazonensis SB2B | Sama_2429 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella loihica PV-4 | Shew_2764 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella pealeana ATCC 700345 | Spea_2984 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella halifaxensis HAW-EB4 | Shal_3073 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella piezotolerans WP3 | swp_3612 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella sediminis HAW-EB3 | Ssed_3322 | -38 | 5.6 | ATTAGAAAAACTAAT |
Shewanella woodyi ATCC 51908 | Swoo_3471 | -38 | 5.6 | ATTAGAAAAACTAAT |
Position: -254
Score: 5.6 Sequence: ATTAGTAATTCTAAT
Locus tag: Sbal_1741
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Sbal_1741 | -254 | 5.6 | ATTAGTAATTCTAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: SO2753 | ||||
Ortholog function: Prolyl endopeptidase (EC 3.4.21.26) | ||||
Shewanella oneidensis MR-1 | SO_2753 | -256 | 5.2 | ATTAGCTAAACTAAT |
Shewanella putrefaciens CN-32 | Sputcn32_1602 | -255 | 5.3 | ATTAGCAAATCTAAT |
Shewanella sp W3-18-1 | Sputw3181_2420 | -255 | 5.3 | ATTAGCAAATCTAAT |
Shewanella sp ANA-3 | Shewana3_2536 | -255 | 5.2 | ATTAGCAAAACTAAT |
Shewanella sp MR-4 | Shewmr4_2373 | -255 | 5.2 | ATTAGCAAAACTAAT |
Shewanella sp MR-7 | Shewmr7_2445 | -255 | 5.2 | ATTAGCAAAACTAAT |
Shewanella baltica OS155 | Sbal_1741 | -254 | 5.6 | ATTAGTAATTCTAAT |
Shewanella amazonensis SB2B | Sama_2091 | -247 | 5.6 | ATTAGTTTAACTAAT |
Shewanella loihica PV-4 | Shew_1522 | -336 | 5.6 | ATTAGtaTtTCTAAT |
Shewanella pealeana ATCC 700345 | Spea_2569 | -79 | 5.3 | ATAAGATTATCTAAT |
Shewanella halifaxensis HAW-EB4 | Shal_1686 | -84 | 5.1 | ATAAGATTATCTCAT |
Shewanella piezotolerans WP3 | swp_1825 | -310 | 5.6 | ATTAGtTTtaCTAAT |
Shewanella sediminis HAW-EB3 | Ssed_1852 | -278 | 5.2 | ATTAGTTTTTCTTAT |
Shewanella woodyi ATCC 51908 | Swoo_2736 | -280 | 5.6 | ATTAGTTTATCTAAT |
Position: -197
Score: 4.4 Sequence: ATTTAAAAAACTAAT
Locus tag: Sbal_2417
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Sbal_2417 | -197 | 4.4 | ATTTAAAAAACTAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: sdaA | ||||
Ortholog function: L-serine dehydratase 1 (EC 4.3.1.17) | ||||
Shewanella oneidensis MR-1 | SO_2248 | -199 | 4.4 | ATCAAAAAAACTAAT |
Shewanella putrefaciens CN-32 | Sputcn32_2171 | -202 | 4.4 | ATCAAAAAAACTAAT |
Shewanella sp W3-18-1 | Sputw3181_1837 | -202 | 4.4 | ATCAAAAAAACTAAT |
Shewanella sp ANA-3 | Shewana3_2295 | -199 | 4.4 | ATCAAAAAAACTAAT |
Shewanella sp MR-4 | Shewmr4_1725 | -199 | 4.4 | ATCAAAAAAACTAAT |
Shewanella sp MR-7 | Shewmr7_1804 | -199 | 4.4 | ATCAAAAAAACTAAT |
Shewanella baltica OS155 | Sbal_2417 | -197 | 4.4 | ATTTAAAAAACTAAT |
Shewanella denitrificans OS217 | Sden_1946 | -208 | 5.2 | ATAAGAAAAACTAAT |
Shewanella frigidimarina NCIMB 400 | Sfri_2402 | -140 | 4.5 | ATCAAAAAATCTAAT |
Shewanella amazonensis SB2B | Sama_1325 | -189 | 4.6 | ATAAAAATAACTAAT |
Shewanella loihica PV-4 | Shew_1625 | -184 | 4.1 | TTGAAAAAAACTAAT |
Shewanella pealeana ATCC 700345 | Spea_1538 | -232 | 5.7 | ATTAGATTATCTAAT |
Shewanella halifaxensis HAW-EB4 | Shal_1608 | -244 | 5.3 | ATTAGCTTATCTAAT |
Shewanella piezotolerans WP3 | swp_1748 | -246 | 5.6 | ATTAGTTTATCTAAT |
Shewanella sediminis HAW-EB3 | Ssed_2838 | -187 | 4.8 | ATTAAAAAATCTCAT |
Shewanella woodyi ATCC 51908 | Swoo_1806 | -206 | 4.7 | CTTAGCTTATCTAAT |
-179 | 4.8 | ATTAAAAAAACTCAT | ||
Position: -97
Score: 5 Sequence: ATTAATTTTTCTAAT
Locus tag: Sbal_3015
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Sbal_3015 | -97 | 5 | ATTAATTTTTCTAAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: SO3342 | ||||
Ortholog function: putative membrane protein | ||||
Shewanella oneidensis MR-1 | SO_3342 | -99 | 5.1 | ATTATATATTCTAAT |
Shewanella putrefaciens CN-32 | Sputcn32_2677 | -85 | 5 | ATTATTTTTTCTAAT |
Shewanella sp W3-18-1 | Sputw3181_1334 | -85 | 5 | ATTATTTTTTCTAAT |
Shewanella sp ANA-3 | Shewana3_1204 | -99 | 4.8 | ATGAAATATTCTAAT |
-77 | 4.2 | TTTAAATAATCTCAT | ||
Shewanella sp MR-4 | Shewmr4_1203 | -99 | 5.1 | ATTAAATATTCTAAT |
-77 | 4.2 | TTTAAATAATCTCAT | ||
Shewanella sp MR-7 | Shewmr7_1274 | -99 | 5.1 | ATTAAATATTCTAAT |
-77 | 4.2 | TTTAAATAATCTCAT | ||
Shewanella baltica OS155 | Sbal_3015 | -97 | 5 | ATTAATTTTTCTAAT |
Shewanella frigidimarina NCIMB 400 | Sfri_0596 | -171 | 4.3 | ATTATTAAAACTATT |
-96 | 5 | ATTAGATTAATTAAT | ||
Shewanella amazonensis SB2B | Sama_2463 | -113 | 4.6 | ATAATAAAAACTAAT |
Shewanella loihica PV-4 | Shew_1154 | -97 | 5.1 | ATTAAAAAATCTAAT |
Shewanella pealeana ATCC 700345 | Spea_1141 | -96 | 5.1 | ATTAGAAAATGTAAT |
Shewanella halifaxensis HAW-EB4 | Shal_1186 | -96 | 5.1 | ATTAGAAAATATAAT |
Shewanella piezotolerans WP3 | swp_1289 | -95 | 5 | ATTAGTTTTTTTAAT |
Shewanella sediminis HAW-EB3 | Ssed_1246 | -97 | 5.1 | ATTAAAATATCTAAT |
Shewanella woodyi ATCC 51908 | Swoo_1346 | -173 | 4.6 | ATTAGCTAAACTAAA |
-98 | 5.6 | ATTAGAAAAACTAAT | ||