Propagation of Fnr regulog to Shewanella sp W3-18-1
| Source regulog: | Fnr - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | |
| Biological process: | Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella sp W3-18-1 |
| Orthologous TF(s) | Sputw3181_2054 |
| Regulated genes | 30 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -305
Score: 4.9 Sequence: GTGATCTTGATCAA
Locus tag: Sputw3181_0133
|
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| Sputw3181_0133 | -305 | 4.9 | GTGATCTTGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: coxB | ||||
| Ortholog function: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1) | ||||
| Shewanella amazonensis SB2B | Sama_3483 | -314 | 4.9 | GTGATCTTGATCAA |
| Shewanella baltica OS155 | Sbal_0154 | -313 | 4.9 | GTGATCTTGATCAA |
| Shewanella denitrificans OS217 | Sden_3517 | -312 | 4.9 | GTGATCTTGATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0258 | -317 | 4.9 | GTGATCTTGATCAA |
| -209 | 4.8 | ATGATCCAAATCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0258 | -372 | 4.9 | GTGATCTTGATCAA |
| Shewanella loihica PV-4 | Shew_0125 | -317 | 4.9 | GTGATCTTGATCAA |
| Shewanella oneidensis MR-1 | SO4606 | -313 | 4.9 | GTGATCTTGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_3999 | -349 | 4.9 | GTGATCTTGATCAA |
| -246 | 4.2 | TAGATCCTGATCAA | ||
| Shewanella piezotolerans WP3 | swp_4823 | -366 | 4.9 | GTGATCTTGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3782 | -305 | 4.9 | GTGATCTTGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_0198 | -339 | 5.2 | TTGATCTTGATCAA |
| Shewanella sp ANA-3 | Shewana3_3991 | -314 | 4.9 | GTGATCTTGATCAA |
| Shewanella sp MR-4 | Shewmr4_3791 | -314 | 4.9 | GTGATCTTGATCAA |
| Shewanella sp MR-7 | Shewmr7_3864 | -313 | 4.9 | GTGATCTTGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_0133 | -305 | 4.9 | GTGATCTTGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_0178 | -337 | 4.9 | GTGATCTTGATCAA |
|
Position: -198
Score: 4.2 Sequence: TTGGCCTAGATCAA
Locus tag: Sputw3181_0242
|
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| Sputw3181_0242 | -198 | 4.2 | TTGGCCTAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfD | ||||
| Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) | ||||
| Shewanella amazonensis SB2B | Sama_3523 | -184 | 4.6 | TTGGTCTGGATCAT |
| Shewanella loihica PV-4 | Shew_0086 | -175 | 3.9 | TTGTTTAAGATCAA |
| Shewanella oneidensis MR-1 | SO4453 | -198 | 4.3 | TTGATCAGGTTCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0388 | -198 | 4.2 | TTGGCCTAGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_4403 | -177 | 4.6 | TTGCTCAAGATCAA |
| Shewanella sp ANA-3 | Shewana3_0273 | -202 | 4.3 | TTGATCCGCTTCAA |
| Shewanella sp MR-4 | Shewmr4_0272 | -202 | 4.3 | TTGATCCGCTTCAA |
| Shewanella sp MR-7 | Shewmr7_3749 | -202 | 4.3 | TTGATCCGCTTCAA |
| Shewanella sp W3-18-1 | Sputw3181_0242 | -198 | 4.2 | TTGGCCTAGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4794 | -162 | 4.5 | TTGCTCAGGATCAA |
|
Position: -152
Score: 4.5 Sequence: TTGATCTAGGCCAA
Locus tag: Sputw3181_0243
|
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| Sputw3181_0243 | -152 | 4.5 | TTGATCTAGGCCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaA | ||||
| Shewanella amazonensis SB2B | Sama_3524 | -145 | 4.6 | ATGATCCAGACCAA |
| Shewanella baltica OS155 | Sbal_0284 | -152 | 3.9 | GTGATCTAGGTTAA |
| Shewanella loihica PV-4 | Shew_0087 | -154 | 4.2 | TTGATCTTAAACAA |
| Shewanella oneidensis MR-1 | SO4452 | -185 | 4.5 | TTGAACCTGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0389 | -152 | 4.5 | TTGATCTAGGCCAA |
| Shewanella sediminis HAW-EB3 | Ssed_4402 | -186 | 4.9 | TTGATCTTGAGCAA |
| Shewanella sp ANA-3 | Shewana3_0274 | -152 | 4.7 | TTGAAGCGGATCAA |
| Shewanella sp MR-4 | Shewmr4_0273 | -152 | 4.7 | TTGAAGCGGATCAA |
| Shewanella sp MR-7 | Shewmr7_3748 | -152 | 4.7 | TTGAAGCGGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_0243 | -152 | 4.5 | TTGATCTAGGCCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4793 | -187 | 4.6 | TTGATCCTGAGCAA |
|
Position: -108
Score: 3.8 Sequence: GTGAGGTAGCTCAC
Locus tag: Sputw3181_0498
|
||||
| Sputw3181_0498 | -108 | 3.8 | GTGAGGTAGCTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdC2 | ||||
| Ortholog function: Fumarate reductase, cytochrome b subunit | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_3899 | -134 | 3.9 | GTGATCTACGTCTA |
| Shewanella loihica PV-4 | Shew_0332 | -122 | 3.9 | GTGATCGACGTCAA |
| Shewanella pealeana ATCC 700345 | Spea_0392 | -134 | 4.4 | GTGATCTTGATCTA |
| Shewanella piezotolerans WP3 | swp_0428 | -134 | 4.1 | GTGATCTTGCTCTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3441 | -108 | 3.8 | GTGAGGTAGCTCAC |
| Shewanella sediminis HAW-EB3 | Ssed_4116 | -122 | 4.3 | GTGATCTGCTTCAA |
| Shewanella sp W3-18-1 | Sputw3181_0498 | -108 | 3.8 | GTGAGGTAGCTCAC |
| Shewanella woodyi ATCC 51908 | Swoo_0507 | -134 | 4.4 | GTGATGTGGTTCAA |
|
Position: -93
Score: 4 Sequence: TTGATCTGTCTCAG
Locus tag: Sputw3181_0499
|
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| Sputw3181_0499 | -93 | 4 | TTGATCTGTCTCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdC1 | ||||
| Ortholog function: Fumarate reductase, cytochrome b subunit | ||||
| Shewanella baltica OS155 | Sbal_3936 | -101 | 4.6 | TTGATCTGGCTCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_3898 | -134 | 3.9 | GTGATCTACGTCTA |
| Shewanella loihica PV-4 | Shew_0333 | -122 | 3.9 | GTGATCGACGTCAA |
| Shewanella oneidensis MR-1 | SO0397 | -105 | 4.3 | TTGATCTAACTCAG |
| Shewanella pealeana ATCC 700345 | Spea_0393 | -134 | 4.4 | GTGATCTTGATCTA |
| Shewanella piezotolerans WP3 | swp_0429 | -134 | 4.1 | GTGATCTTGCTCTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3440 | -108 | 3.8 | GTGAGGTAGCTCAC |
| Shewanella sediminis HAW-EB3 | Ssed_4115 | -100 | 4.3 | TTGATCTGCCTCAC |
| Shewanella sp ANA-3 | Shewana3_0402 | -103 | 4.3 | TTGATCTAACTCAG |
| Shewanella sp MR-4 | Shewmr4_0403 | -103 | 4.3 | TTGATCTAACTCAG |
| Shewanella sp MR-7 | Shewmr7_3622 | -102 | 4.3 | TTGATCTAACTCAG |
| Shewanella sp W3-18-1 | Sputw3181_0499 | -108 | 3.8 | GTGAGGTAGCTCAC |
| Shewanella woodyi ATCC 51908 | Swoo_0508 | -134 | 4.4 | GTGATGTGGTTCAA |
|
Position: -152
Score: 4.3 Sequence: TTGATATAAGTCAA
Locus tag: Sputw3181_0643
|
||||
| Sputw3181_0643 | -152 | 4.3 | TTGATATAAGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0579 | ||||
| Ortholog function: Predicted serine/threonine protein kinase | ||||
| Shewanella amazonensis SB2B | Sama_0541 | -118 | 4.9 | TTGATTTGCATCAA |
| Shewanella baltica OS155 | Sbal_0539 | -154 | 4.5 | TTGATGTAAGTCAA |
| Shewanella denitrificans OS217 | Sden_0539 | -87 | 4.5 | TTGATGCAGGTCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3500 | -226 | 4.6 | TTGATATAGGTCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0673 | -123 | 4.8 | TTGATGTGTATCAA |
| Shewanella loihica PV-4 | Shew_3263 | -124 | 4.6 | TTGATATAGGTCAA |
| Shewanella oneidensis MR-1 | SO0579 | -145 | 4.9 | TTGATATAAATCAA |
| Shewanella pealeana ATCC 700345 | Spea_0586 | -123 | 4.8 | TTGATATGCATCAA |
| Shewanella piezotolerans WP3 | swp_4517 | -140 | 4.9 | TTGATATACATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3298 | -152 | 4.3 | TTGATATAAGTCAA |
| Shewanella sediminis HAW-EB3 | Ssed_4012 | -185 | 4.6 | TTGATATAGGTCAA |
| Shewanella sp ANA-3 | Shewana3_0578 | -152 | 4.9 | TTGATATAAATCAA |
| Shewanella sp MR-4 | Shewmr4_0579 | -154 | 4.9 | TTGATATAAATCAA |
| Shewanella sp MR-7 | Shewmr7_3451 | -154 | 4.9 | TTGATATAAATCAA |
| Shewanella sp W3-18-1 | Sputw3181_0643 | -152 | 4.3 | TTGATATAAGTCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4155 | -226 | 4.8 | TTGATGTAGGTCAA |
|
Position: -143
Score: 4.2 Sequence: TTGATCCCGATCGA
Locus tag: Sputw3181_0796
|
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| Sputw3181_0796 | -143 | 4.2 | TTGATCCCGATCGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napD | ||||
| Ortholog function: Periplasmic nitrate reductase component NapD | ||||
| Shewanella baltica OS155 | Sbal_3510 | -146 | 4.7 | TTGATCCGGATCGA |
| Shewanella halifaxensis HAW-EB4 | Shal_0716 | -241 | 4 | TTAATGTAGCGCAA |
| -146 | 4.1 | TTGATCTCGGTCTA | ||
| Shewanella loihica PV-4 | Shew_3205 | -150 | 4.7 | TTGATCTCGATCTA |
| Shewanella oneidensis MR-1 | SO0849 | -146 | 4.2 | TTGATCCCGATCGA |
| Shewanella pealeana ATCC 700345 | Spea_0624 | -240 | 3.8 | TTAATATAGCGCAA |
| -169 | 4.9 | GTGAACTAGATCAA | ||
| -145 | 4.1 | TTGATCTCGGTCTA | ||
| Shewanella piezotolerans WP3 | swp_4456 | -233 | 4 | TTAATGTAGCGCAA |
| -138 | 4.1 | TTGATCTTGGTCGA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3147 | -143 | 4.2 | TTGATCCCGATCGA |
| Shewanella sediminis HAW-EB3 | Ssed_3956 | -159 | 4.5 | ATGATCTCGATCTA |
| Shewanella sp ANA-3 | Shewana3_3429 | -145 | 4.2 | TTGATCCCGATCGA |
| Shewanella sp MR-4 | Shewmr4_0705 | -145 | 4.2 | TTGATCCCGATCGA |
| Shewanella sp MR-7 | Shewmr7_3317 | -145 | 4.2 | TTGATCCCGATCGA |
| Shewanella sp W3-18-1 | Sputw3181_0796 | -143 | 4.2 | TTGATCCCGATCGA |
| Shewanella woodyi ATCC 51908 | Swoo_4109 | -151 | 4.6 | TTGATCTTGATCGA |
|
Position: -157
Score: 4 Sequence: GTGATATGGATTAA
Position: -32
Score: 4.2 Sequence: GTGAGCTTAATCAA
Locus tag: Sputw3181_1286
|
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| Sputw3181_1286 | -157 | 4 | GTGATATGGATTAA | |
| -32 | 4.2 | GTGAGCTTAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aer | ||||
| Ortholog function: Aerotaxis sensor receptor protein | ||||
| Shewanella baltica OS155 | Sbal_1238 | -82 | 4 | GTGAGCTTTATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2428 | -78 | 3.9 | TTGATAGCAATCAA |
| Shewanella oneidensis MR-1 | SO3404 | -80 | 4.2 | GTGAACTTAATCAA |
| Shewanella piezotolerans WP3 | swp_1991 | -72 | 4.9 | TTGATTTAAATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_2726 | -32 | 4.2 | GTGAGCTTAATCAA |
| Shewanella sp ANA-3 | Shewana3_1150 | -80 | 4.2 | GTGAGCTTAATCAA |
| Shewanella sp MR-4 | Shewmr4_1149 | -80 | 4.2 | GTGAGCTTAATCAA |
| Shewanella sp MR-7 | Shewmr7_1220 | -80 | 4.2 | GTGAGCTTAATCAA |
| Shewanella sp W3-18-1 | Sputw3181_1286 | -32 | 4.2 | GTGAGCTTAATCAA |
|
Position: -339
Score: 4.9 Sequence: TTGATTTGAATCAA
Locus tag: Sputw3181_1366
|
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| Sputw3181_1366 | -339 | 4.9 | TTGATTTGAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-) | ||||
| Shewanella amazonensis SB2B | Sama_2349 | -334 | 4.3 | TTGATTTACGTCAA |
| Shewanella baltica OS155 | Sbal_2979 | -342 | 4.9 | TTGATTTGCATCAA |
| Shewanella denitrificans OS217 | Sden_1274 | -153 | 5.3 | TTGATCTAAATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1142 | -338 | 4.2 | ATGATTGTGATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1381 | -336 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Shewanella loihica PV-4 | Shew_1302 | -341 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Shewanella oneidensis MR-1 | SO3286 | -338 | 4.9 | TTGATTTGAATCAA |
| Shewanella pealeana ATCC 700345 | Spea_1318 | -337 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Shewanella piezotolerans WP3 | swp_1469 | -332 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2641 | -339 | 4.9 | TTGATTTGAATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_3118 | -336 | 4.9 | TTGATTTGAATCAA |
| Shewanella sp ANA-3 | Shewana3_1241 | -338 | 4.9 | TTGATTTGAATCAA |
| Shewanella sp MR-4 | Shewmr4_1239 | -338 | 4.9 | TTGATTTGAATCAA |
| Shewanella sp MR-7 | Shewmr7_1310 | -338 | 4.9 | TTGATTTGAATCAA |
| Shewanella sp W3-18-1 | Sputw3181_1366 | -339 | 4.9 | TTGATTTGAATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_1565 | -334 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.2 | ATGATGGGGATCTA | ||
|
Position: -103
Score: 4.9 Sequence: TTGATATACATCAA
Locus tag: Sputw3181_1924
|
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| Sputw3181_1924 | -103 | 4.9 | TTGATATACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyaA | ||||
| Ortholog function: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1) | ||||
| Shewanella amazonensis SB2B | Sama_1679 | -107 | 4.2 | TTGACGTGTATCAA |
| Shewanella baltica OS155 | Sbal_1889 | -163 | 3.8 | TAGATCTACGTCAT |
| -103 | 4.9 | TTGATATACATCAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2103 | -164 | 4.4 | TTGATCAACATCAT |
| -103 | 4.7 | TTGATTTATATCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2261 | -208 | 3.8 | GTGATCTCCATCAC |
| -148 | 5.2 | ATGATCTAGCTCAA | ||
| -87 | 3.9 | TTGACGCATATCAA | ||
| Shewanella loihica PV-4 | Shew_1765 | -220 | 4.7 | TTGAAGCGGATCAA |
| -160 | 4.8 | TTGATCCAGCTCAT | ||
| -99 | 4.2 | TTGACATACATCAA | ||
| Shewanella oneidensis MR-1 | SO2099 | -101 | 4.8 | TTGATATGCATCAA |
| Shewanella pealeana ATCC 700345 | Spea_2033 | -147 | 5.2 | ATGATCTAGCTCAA |
| -86 | 3.8 | TTGACTCATATCAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2088 | -103 | 4.9 | TTGATATACATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_1908 | -158 | 4.6 | ATGATCTAGTTCAT |
| -98 | 4.5 | TTGATGTGAGTCAA | ||
| Shewanella sp ANA-3 | Shewana3_1880 | -162 | 4.3 | TAGATCTGCATCAT |
| -102 | 4.8 | TTGATATGCATCAA | ||
| Shewanella sp MR-4 | Shewmr4_1822 | -162 | 4.3 | TAGATCTGCATCAT |
| -102 | 4.8 | TTGATATGCATCAA | ||
| Shewanella sp MR-7 | Shewmr7_2155 | -162 | 4.3 | TAGATCTGCATCAT |
| -102 | 4.8 | TTGATATGCATCAA | ||
| Shewanella sp W3-18-1 | Sputw3181_1924 | -103 | 4.9 | TTGATATACATCAA |
|
Position: -210
Score: 5.6 Sequence: TTGATCTAGATCAA
Locus tag: Sputw3181_2046
|
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| Sputw3181_2046 | -210 | 5.6 | TTGATCTAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccoN | ||||
| Ortholog function: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1) | ||||
| Shewanella amazonensis SB2B | Sama_1791 | -218 | 5.3 | TTGATCCAGATCAA |
| Shewanella baltica OS155 | Sbal_2201 | -212 | 5.6 | TTGATCTAGATCAA |
| -169 | 4.5 | TTGATATTGCTCAA | ||
| Shewanella baltica OS155 | Sbal_4487 | -212 | 5.6 | TTGATCTAGATCAA |
| -169 | 4.5 | TTGATATTGCTCAA | ||
| Shewanella denitrificans OS217 | Sden_1851 | -220 | 5.3 | TTGATCCAGATCAA |
| -178 | 5.1 | TTGATGTAGCTCAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2010 | -224 | 5.6 | TTGATCTAGATCAA |
| -182 | 4.3 | TTGACTTAGCTCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2197 | -217 | 5.6 | TTGATCTAGATCAA |
| -174 | 4.9 | TTGATATAGCTCAA | ||
| Shewanella loihica PV-4 | Shew_1985 | -217 | 5.6 | TTGATCTGGATCAA |
| -174 | 4.5 | TTGATATTGCTCAA | ||
| Shewanella oneidensis MR-1 | SO2364 | -212 | 5.6 | TTGATCTAGATCAA |
| -169 | 4.2 | TTGACATGGCTCAA | ||
| -106 | 4.3 | TTGACATAGCTCAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2214 | -215 | 5.6 | TTGATCTAGATCAA |
| -172 | 4.9 | TTGATATAGCTCAA | ||
| Shewanella piezotolerans WP3 | swp_2572 | -217 | 5.6 | TTGATCTAGATCAA |
| -174 | 4.3 | TTGACATAGCTCAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1959 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 3.9 | TTGACATTGCTCAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_2211 | -216 | 5.6 | TTGATCTAGATCAA |
| -173 | 4.3 | TTGACATAGCTCAA | ||
| Shewanella sp ANA-3 | Shewana3_2107 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 4.2 | TTGACATGGCTCAA | ||
| Shewanella sp MR-4 | Shewmr4_2006 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 4.2 | TTGACATGGCTCAA | ||
| Shewanella sp MR-7 | Shewmr7_1969 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 4.2 | TTGACATGGCTCAA | ||
| Shewanella sp W3-18-1 | Sputw3181_2046 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 3.9 | TTGACATTGCTCAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_2425 | -216 | 5.6 | TTGATCTAGATCAA |
| -173 | 4.3 | TTGACATAGCTCAA | ||
|
Position: -72
Score: 4.9 Sequence: TTGATCTAGAACAA
Locus tag: Sputw3181_2055
|
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| Sputw3181_2055 | -72 | 4.9 | TTGATCTAGAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uspE | ||||
| Ortholog function: Universal stress protein E | ||||
| Shewanella amazonensis SB2B | Sama_1800 | -74 | 4.6 | TTGATCTAAAACAA |
| Shewanella baltica OS155 | Sbal_2210 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella baltica OS155 | Sbal_4496 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella denitrificans OS217 | Sden_1842 | -69 | 4.2 | TTGATATAGCTCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2019 | -87 | 4.6 | ATGATCTATCTCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2206 | -73 | 4.6 | TTGATCTAAAACAA |
| Shewanella loihica PV-4 | Shew_1994 | -72 | 4.6 | TTGATCTAAAACAA |
| Shewanella oneidensis MR-1 | SO2355 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella pealeana ATCC 700345 | Spea_2223 | -74 | 4.6 | TTGATCTAAAACAA |
| Shewanella piezotolerans WP3 | swp_2581 | -71 | 4.6 | TTGATCTAAAACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1950 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella sediminis HAW-EB3 | Ssed_2220 | -71 | 4.6 | TTGATCTGAAACAA |
| Shewanella sp ANA-3 | Shewana3_2116 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella sp MR-4 | Shewmr4_2015 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella sp MR-7 | Shewmr7_1960 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella sp W3-18-1 | Sputw3181_2055 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella woodyi ATCC 51908 | Swoo_2416 | -70 | 4.9 | TTGATCTAAAGCAA |
|
Position: -172
Score: 5.4 Sequence: ATGATCTGGATCAA
Locus tag: Sputw3181_2107
|
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| Sputw3181_2107 | -172 | 5.4 | ATGATCTGGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napE2 | ||||
| Ortholog function: Periplasmic nitrate reductase component NapE | ||||
| Shewanella amazonensis SB2B | Sama_1620 | -133 | 5.4 | ATGATCTGGATCAA |
| Shewanella baltica OS155 | Sbal_1908 | -171 | 5.4 | ATGATCTGGATCAA |
| Shewanella denitrificans OS217 | Sden_1495 | -69 | 5.1 | CTGATCTAGATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2555 | -146 | 5.3 | ATGATCTAGATCAT |
| Shewanella loihica PV-4 | Shew_1768 | -181 | 5.1 | ATGATCCAGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_2429 | -191 | 5.4 | ATGATCTGGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1901 | -172 | 5.4 | ATGATCTGGATCAA |
| Shewanella sp ANA-3 | Shewana3_1898 | -164 | 5.4 | ATGATCTGGATCAA |
| Shewanella sp MR-4 | Shewmr4_1840 | -164 | 5.4 | ATGATCTGGATCAA |
| Shewanella sp MR-7 | Shewmr7_2137 | -164 | 5.4 | ATGATCTGGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_2107 | -172 | 5.4 | ATGATCTGGATCAA |
|
Position: -152
Score: 4.5 Sequence: GTGATGTGAATCAT
Locus tag: Sputw3181_2337
|
||||
| Sputw3181_2337 | -152 | 4.5 | GTGATGTGAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydhD | ||||
| Ortholog function: Glutaredoxin-related protein | ||||
| Shewanella amazonensis SB2B | Sama_1919 | -169 | 4.5 | GTGATGTGAATCAT |
| Shewanella baltica OS155 | Sbal_1783 | -152 | 4.5 | GTGATGTGAATCAT |
| Shewanella denitrificans OS217 | Sden_1640 | -133 | 4.5 | GTGATGTGCATCAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1748 | -151 | 4.5 | GTGATGTGAATCAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2335 | -150 | 3.9 | GTGAAGTGTATCAT |
| Shewanella loihica PV-4 | Shew_1835 | -160 | 4.5 | GTGATGTGAATCAT |
| Shewanella oneidensis MR-1 | SO2880 | -153 | 4.5 | GTGATGTGAATCAT |
| Shewanella pealeana ATCC 700345 | Spea_1964 | -150 | 3.9 | GTGAAGTGTATCAT |
| Shewanella piezotolerans WP3 | swp_2753 | -149 | 3.9 | GTGAAGTGTATCAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1688 | -152 | 4.5 | GTGATGTGAATCAT |
| Shewanella sp ANA-3 | Shewana3_1640 | -153 | 4.5 | GTGATGTGAATCAT |
| Shewanella sp MR-4 | Shewmr4_1573 | -153 | 4.5 | GTGATGTGAATCAT |
| Shewanella sp MR-7 | Shewmr7_1648 | -153 | 4.5 | GTGATGTGAATCAT |
| Shewanella sp W3-18-1 | Sputw3181_2337 | -152 | 4.5 | GTGATGTGAATCAT |
|
Position: -121
Score: 5.2 Sequence: ATGATCTGGATCAT
Locus tag: Sputw3181_2559
|
||||
| Sputw3181_2559 | -121 | 5.2 | ATGATCTGGATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Shewanella amazonensis SB2B | Sama_1275 | -114 | 4.6 | ATGATCCATATCAA |
| Shewanella baltica OS155 | Sbal_1665 | -122 | 5.2 | ATGATCTGGATCAT |
| Shewanella denitrificans OS217 | Sden_1419 | -166 | 5.5 | ATGATCTAGATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2443 | -106 | 5.4 | ATGATCTGGATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2692 | -123 | 5.4 | ATGATCTGGATCAA |
| Shewanella loihica PV-4 | Shew_2449 | -122 | 5.4 | ATGATCTGGATCAA |
| Shewanella oneidensis MR-1 | SO2834 | -269 | 4 | TTGATTTTAAGCAT |
| -121 | 5.2 | ATGATCTGGATCAT | ||
| Shewanella pealeana ATCC 700345 | Spea_2619 | -123 | 5.4 | ATGATCTGGATCAA |
| Shewanella piezotolerans WP3 | swp_3165 | -122 | 5.4 | ATGATCTGGATCAA |
| -62 | 3.8 | TTGATTTAAAGTAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1540 | -203 | 3.9 | ATGACTTAGGTCAA |
| -121 | 5.2 | ATGATCTGGATCAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1600 | -122 | 5 | ATGATCGAGATCAA |
| Shewanella sp ANA-3 | Shewana3_2603 | -121 | 5.2 | ATGATCTGGATCAT |
| Shewanella sp MR-4 | Shewmr4_2441 | -121 | 5.2 | ATGATCTGGATCAT |
| Shewanella sp MR-7 | Shewmr7_2511 | -121 | 5.2 | ATGATCTGGATCAT |
| Shewanella sp W3-18-1 | Sputw3181_2559 | -203 | 3.9 | ATGACTTAGGTCAA |
| -121 | 5.2 | ATGATCTGGATCAT | ||
| Shewanella woodyi ATCC 51908 | Swoo_3049 | -122 | 4.8 | ATGATCAGGATCAA |
|
Position: -89
Score: 4.3 Sequence: TTGATCTAGGTAAA
Locus tag: Sputw3181_2621
|
||||
| Sputw3181_2621 | -89 | 4.3 | TTGATCTAGGTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Shewanella baltica OS155 | Sbal_1594 | -272 | 4 | GTGATGTTGATCAC |
| -87 | 4.3 | TTGATCTAGGTAAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2777 | -275 | 4.1 | GTGATCTGTGTCAA |
| -92 | 4.3 | TTGATCTAGGTAAA | ||
| Shewanella loihica PV-4 | Shew_2518 | -241 | 4.6 | GTGATCTAGATCAC |
| -89 | 4.9 | TTGATCTAGATAAA | ||
| Shewanella oneidensis MR-1 | SO1783 | -87 | 4.3 | TTGATCTAGGTAAA |
| Shewanella pealeana ATCC 700345 | Spea_2691 | -92 | 4.3 | TTGATCTAGGTAAA |
| Shewanella piezotolerans WP3 | swp_3271 | -91 | 4.9 | TTGATCTAGATAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1480 | -89 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sediminis HAW-EB3 | Ssed_1531 | -92 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sp ANA-3 | Shewana3_2671 | -87 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sp MR-4 | Shewmr4_2505 | -87 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sp MR-7 | Shewmr7_2573 | -87 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sp W3-18-1 | Sputw3181_2621 | -89 | 4.3 | TTGATCTAGGTAAA |
|
Position: -103
Score: 5.3 Sequence: TTGATTTAGATCAA
Locus tag: Sputw3181_2709
|
||||
| Sputw3181_2709 | -103 | 5.3 | TTGATTTAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: Outer membrane protein W precursor | ||||
| Shewanella amazonensis SB2B | Sama_1371 | -105 | 5.2 | TTGATTTGGATCAA |
| Shewanella baltica OS155 | Sbal_1490 | -103 | 5.2 | TTGATTTGGATCAA |
| Shewanella denitrificans OS217 | Sden_2589 | -153 | 4.5 | GTGAATTAGATCAA |
| -103 | 5.3 | TTGATCCAGATCAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1334 | -166 | 4.6 | GTGATCCAAATCAA |
| -105 | 5.3 | TTGATCTAAATCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2887 | -107 | 4.4 | TTGATTCAGGTCAA |
| Shewanella oneidensis MR-1 | SO1673 | -293 | 4.3 | TTGATGTAAATGAA |
| -106 | 5.2 | TTGATTTGGATCAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2787 | -155 | 4.3 | GTGATCTAGATCCT |
| -104 | 5.3 | TTGATTTAGATCAA | ||
| Shewanella piezotolerans WP3 | swp_3395 | -107 | 5.6 | TTGATCTAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1392 | -103 | 5.3 | TTGATTTAGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_1469 | -154 | 3.8 | GTGAGCTTGGTCAT |
| -104 | 5.6 | TTGATCTGGATCAA | ||
| Shewanella sp ANA-3 | Shewana3_2775 | -103 | 5.2 | TTGATTTGGATCAA |
| Shewanella sp MR-4 | Shewmr4_2601 | -103 | 5.2 | TTGATTTGGATCAA |
| Shewanella sp MR-7 | Shewmr7_2668 | -103 | 5.2 | TTGATTTGGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_2709 | -103 | 5.3 | TTGATTTAGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_3207 | -154 | 4.1 | GTGAGTTCGATCAA |
| -104 | 5.2 | TTGATTTGGATCAA | ||
|
Position: -175
Score: 5.3 Sequence: ATGATCTAGATCAT
Locus tag: Sputw3181_2834
|
||||
| Sputw3181_2834 | -175 | 5.3 | ATGATCTAGATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lldP | ||||
| Ortholog function: L-lactate permease | ||||
| Shewanella amazonensis SB2B | Sama_2439 | -132 | 4.9 | ATGATCTGTATCAA |
| Shewanella baltica OS155 | Sbal_1354 | -177 | 5.3 | ATGATCTAGATCAT |
| Shewanella loihica PV-4 | Shew_3135 | -162 | 5.3 | ATGATCTAGATCAT |
| Shewanella piezotolerans WP3 | swp_1813 | -376 | 4.7 | TTGATCCACATCAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1272 | -175 | 5.3 | ATGATCTAGATCAT |
| Shewanella sediminis HAW-EB3 | Ssed_0907 | -375 | 5 | TTGATCTGAATCAT |
| Shewanella sp ANA-3 | Shewana3_2904 | -177 | 5.3 | ATGATCTAGATCAT |
| Shewanella sp W3-18-1 | Sputw3181_2834 | -175 | 5.3 | ATGATCTAGATCAT |
|
Position: -97
Score: 4.6 Sequence: TTGATCCAGATCAC
Locus tag: Sputw3181_3024
|
||||
| Sputw3181_3024 | -97 | 4.6 | TTGATCCAGATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyaB | ||||
| Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
| Shewanella amazonensis SB2B | Sama_0861 | -98 | 4.3 | TTGATTCAGATCAC |
| Shewanella baltica OS155 | Sbal_1182 | -97 | 4.6 | TTGATCCAGATCAC |
| Shewanella denitrificans OS217 | Sden_2784 | -153 | 5 | TTGATCTAGATCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2947 | -154 | 4.6 | TTGATCTAAATCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1065 | -95 | 4 | TTGACTTAGATCAC |
| Shewanella loihica PV-4 | Shew_1036 | -158 | 4 | TTGACTTAGATCAC |
| Shewanella oneidensis MR-1 | SO1329 | -158 | 4.6 | TTGATCCAGATCAC |
| Shewanella pealeana ATCC 700345 | Spea_1019 | -96 | 4 | TTGACTTAGATCAC |
| Shewanella piezotolerans WP3 | swp_3798 | -94 | 4 | TTGACTTAGATCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1140 | -97 | 4.6 | TTGATCCAGATCAC |
| Shewanella sp ANA-3 | Shewana3_3045 | -158 | 4.6 | TTGATCCAGATCAC |
| Shewanella sp MR-4 | Shewmr4_2867 | -158 | 4.6 | TTGATCCAGATCAC |
| Shewanella sp MR-7 | Shewmr7_2949 | -158 | 4.6 | TTGATCCAGATCAC |
| Shewanella sp W3-18-1 | Sputw3181_3024 | -97 | 4.6 | TTGATCCAGATCAC |
|
Position: -44
Score: 5.3 Sequence: TTGATTTAGATCAA
Locus tag: Sputw3181_3228
|
||||
| Sputw3181_3228 | -44 | 5.3 | TTGATTTAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfr2 | ||||
| Ortholog function: Bacterioferritin | ||||
| Shewanella amazonensis SB2B | Sama_2530 | -41 | 5.4 | TTGATGTAGATCAA |
| Shewanella baltica OS155 | Sbal_0932 | -44 | 5.3 | TTGATTTAGATCAA |
| Shewanella denitrificans OS217 | Sden_0990 | -36 | 4.6 | TTGATTTGGATCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_0957 | -37 | 4.5 | TTGATCGAGATCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_3179 | -33 | 5.2 | TTGATATAGATCAA |
| Shewanella loihica PV-4 | Shew_2873 | -33 | 5.3 | TTGATTTAGATCAA |
| Shewanella oneidensis MR-1 | SO1111 | -43 | 5.3 | TTGATTTAGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_3095 | -33 | 5.2 | TTGATATAGATCAA |
| Shewanella piezotolerans WP3 | swp_1175 | -35 | 5.2 | TTGATATAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0948 | -44 | 5.3 | TTGATTTAGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_2230 | -31 | 5.2 | TTGATATAGATCAA |
| Shewanella sp ANA-3 | Shewana3_0946 | -43 | 5.3 | TTGATTTAGATCAA |
| Shewanella sp MR-4 | Shewmr4_0944 | -42 | 5.3 | TTGATTTAGATCAA |
| Shewanella sp MR-7 | Shewmr7_0982 | -43 | 5.3 | TTGATTTAGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_3228 | -44 | 5.3 | TTGATTTAGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_3608 | -85 | 5.4 | TTGATGTAGATCAA |
|
Position: -131
Score: 4.7 Sequence: GTGATATAGATCAT
Locus tag: Sputw3181_3312
|
||||
| Sputw3181_3312 | -131 | 4.7 | GTGATATAGATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltP | ||||
| Ortholog function: Sodium/glutamate symport protein | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_0827 | -107 | 4.3 | GTGATACAGATCAT |
| Shewanella loihica PV-4 | Shew_0743 | -153 | 4.2 | TTGATATGAATCAC |
| Shewanella oneidensis MR-1 | SO0922 | -171 | 4 | GTGACATAGATCAT |
| Shewanella pealeana ATCC 700345 | Spea_0775 | -108 | 4.9 | GTGATGTAGATCAT |
| Shewanella piezotolerans WP3 | swp_4258 | -108 | 4.3 | GTGATACAGATCAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0863 | -131 | 4.7 | GTGATATAGATCAT |
| Shewanella sediminis HAW-EB3 | Ssed_0862 | -169 | 4.2 | TTGATATTGATCAC |
| Shewanella sp ANA-3 | Shewana3_3362 | -122 | 4.7 | GTGATATAGATCAT |
| Shewanella sp MR-4 | Shewmr4_0764 | -122 | 4.7 | GTGATATAGATCAT |
| Shewanella sp MR-7 | Shewmr7_3259 | -122 | 4.7 | GTGATATAGATCAT |
| Shewanella sp W3-18-1 | Sputw3181_3312 | -131 | 4.7 | GTGATATAGATCAT |
|
Position: -75
Score: 4.2 Sequence: TTGATCAGGATCAG
Locus tag: Sputw3181_3398
|
||||
| Sputw3181_3398 | -75 | 4.2 | TTGATCAGGATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_0549 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella amazonensis SB2B | Sama_0549 | -135 | 4.6 | TTGATTCACATCAA |
| -75 | 4.3 | TTGATCAAGATCAG | ||
| Shewanella baltica OS155 | Sbal_3565 | -75 | 4.3 | TTGATCAAGATCAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_0507 | -75 | 4.3 | TTGATCAAGATCAG |
| Shewanella halifaxensis HAW-EB4 | Shal_0680 | -75 | 4 | TTGACTAAGATCAA |
| Shewanella loihica PV-4 | Shew_3247 | -87 | 4.4 | TTGATCGAGATCAG |
| Shewanella pealeana ATCC 700345 | Spea_0593 | -138 | 4.2 | ATGATCTACAACAT |
| -78 | 4.2 | TTGACTGAGATCAA | ||
| Shewanella piezotolerans WP3 | swp_4510 | 0 | 4.4 | TTGACCAAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0777 | -75 | 4.2 | TTGATCAGGATCAG |
| Shewanella sediminis HAW-EB3 | Ssed_4003 | -244 | 4.2 | TTTATCTAGATCAC |
| -87 | 4.4 | TTGATCGAGATCAG | ||
| Shewanella sp ANA-3 | Shewana3_0738 | -75 | 4.2 | TTGATCAGGATCAG |
| Shewanella sp W3-18-1 | Sputw3181_3398 | -75 | 4.2 | TTGATCAGGATCAG |
| Shewanella woodyi ATCC 51908 | Swoo_4146 | -77 | 4.4 | TTGATCGAGATCAG |
|
Position: -122
Score: 4.9 Sequence: TTGATCTGGCGCAA
Locus tag: Sputw3181_3486
|
||||
| Sputw3181_3486 | -122 | 4.9 | TTGATCTGGCGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) | ||||
| Shewanella amazonensis SB2B | Sama_0648 | -128 | 4.3 | TTGATCTTGTGCAA |
| Shewanella baltica OS155 | Sbal_0794 | -122 | 5 | TTGATCTAGCGCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0622 | -138 | 4.9 | TTGATCTGGCGCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0886 | -125 | 4.6 | TTGATCTACCGCAA |
| Shewanella loihica PV-4 | Shew_0844 | -129 | 4.8 | ATGATCTGCCTCAA |
| Shewanella oneidensis MR-1 | SO3980 | -122 | 5 | TTGATCTAGCGCAA |
| Shewanella pealeana ATCC 700345 | Spea_0831 | -128 | 4.6 | TTGATCTACCGCAA |
| Shewanella piezotolerans WP3 | swp_3958 | -123 | 4.6 | TTGATCTAACGCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0685 | -122 | 4.9 | TTGATCTGGCGCAA |
| Shewanella sediminis HAW-EB3 | Ssed_0931 | -127 | 4.4 | TTGATCTACCGCAT |
| Shewanella sp ANA-3 | Shewana3_0658 | -104 | 5 | TTGATCTAGCGCAA |
| Shewanella sp MR-4 | Shewmr4_0659 | -104 | 5 | TTGATCTAGCGCAA |
| Shewanella sp MR-7 | Shewmr7_3363 | -104 | 5 | TTGATCTAGCGCAA |
| Shewanella sp W3-18-1 | Sputw3181_3486 | -122 | 4.9 | TTGATCTGGCGCAA |
| Shewanella woodyi ATCC 51908 | Swoo_0972 | -127 | 4.6 | TTGATCTACCGCAA |
|
Position: -133
Score: 4.5 Sequence: TTGCGCCAGATCAA
Locus tag: Sputw3181_3487
|
||||
| Sputw3181_3487 | -133 | 4.5 | TTGCGCCAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narQ | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) | ||||
| Shewanella amazonensis SB2B | Sama_0647 | -131 | 4.2 | TTGCACAAGATCAA |
| Shewanella baltica OS155 | Sbal_0793 | -117 | 4.9 | TTGCGCTAGATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0621 | -159 | 4.5 | TTGCGCCAGATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0885 | -130 | 4.6 | TTGCGGTAGATCAA |
| Shewanella loihica PV-4 | Shew_0843 | -132 | 4.5 | TTGAGGCAGATCAT |
| Shewanella oneidensis MR-1 | SO3981 | -170 | 4.9 | TTGCGCTAGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_0830 | -128 | 4.6 | TTGCGGTAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0684 | -133 | 4.5 | TTGCGCCAGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_0930 | -132 | 4.5 | ATGCGGTAGATCAA |
| Shewanella sp ANA-3 | Shewana3_0657 | -134 | 4.9 | TTGCGCTAGATCAA |
| Shewanella sp MR-4 | Shewmr4_0658 | -135 | 4.9 | TTGCGCTAGATCAA |
| Shewanella sp MR-7 | Shewmr7_3364 | -135 | 4.9 | TTGCGCTAGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_3487 | -133 | 4.5 | TTGCGCCAGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_0971 | -131 | 4.6 | TTGCGGTAGATCAA |
|
Position: -97
Score: 4.3 Sequence: GTGATTAGGATCAA
Locus tag: Sputw3181_3717
|
||||
| Sputw3181_3717 | -97 | 4.3 | GTGATTAGGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hupE | ||||
| Ortholog function: Predicted metal transporter | ||||
| Shewanella baltica OS155 | Sbal_3991 | -82 | 4.4 | GTGATTGAGATCAA |
| Shewanella oneidensis MR-1 | SO4304 | -91 | 4.2 | GTGATAAGGATCAA |
| Shewanella piezotolerans WP3 | swp_3063 | -86 | 4.9 | TTGATGTATATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3578 | -97 | 4.3 | GTGATTAGGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_4125 | -87 | 4.8 | TTGATATGCATCAA |
| Shewanella sp ANA-3 | Shewana3_0395 | -93 | 4.2 | GTGATAAGGATCAA |
| Shewanella sp MR-4 | Shewmr4_0396 | -91 | 4.2 | GTGATAAGGATCAA |
| Shewanella sp MR-7 | Shewmr7_3629 | -92 | 4.2 | GTGATAAGGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_3717 | -97 | 4.3 | GTGATTAGGATCAA |
|
Position: -127
Score: 4.8 Sequence: TTGAAGTAGATCAT
Locus tag: Sputw3181_3865
|
||||
| Sputw3181_3865 | -127 | 4.8 | TTGAAGTAGATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdhD | ||||
| Ortholog function: Formate dehydrogenase chain D (EC 1.2.1.2) | ||||
| Shewanella amazonensis SB2B | Sama_3619 | -182 | 4.8 | TTGAAGTGGATCAT |
| Shewanella baltica OS155 | Sbal_4130 | -183 | 5 | TTGAACTAGATCAT |
| Shewanella halifaxensis HAW-EB4 | Shal_0099 | -177 | 5.2 | TTGAACTAGATCAA |
| Shewanella loihica PV-4 | Shew_0053 | -186 | 5 | TTGAACTGGATCAT |
| Shewanella oneidensis MR-1 | SO4503 | -330 | 4.8 | TTGAAGTGGATCAT |
| Shewanella pealeana ATCC 700345 | Spea_4143 | -179 | 5.2 | TTGAACTAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0343 | -183 | 4.8 | TTGAAGTAGATCAT |
| Shewanella sediminis HAW-EB3 | Ssed_4427 | -149 | 5 | TTGAGCTGGATCAT |
| Shewanella sp ANA-3 | Shewana3_3910 | -183 | 4.8 | TTGAGGTGGATCAT |
| Shewanella sp MR-4 | Shewmr4_3714 | -183 | 4.8 | TTGAGGTGGATCAT |
| Shewanella sp MR-7 | Shewmr7_3785 | -183 | 4.8 | TTGAGGTGGATCAT |
| Shewanella sp W3-18-1 | Sputw3181_3865 | -127 | 4.8 | TTGAAGTAGATCAT |
| Shewanella woodyi ATCC 51908 | Swoo_4819 | -159 | 5.1 | TTGAGCTAGATCAT |
|
Position: -230
Score: 4.1 Sequence: GTGATCTATCGCAA
Position: -136
Score: 4.5 Sequence: ATGATCTACTTCAA
Locus tag: Sputw3181_3866
|
||||
| Sputw3181_3866 | -230 | 4.1 | GTGATCTATCGCAA | |
| -136 | 4.5 | ATGATCTACTTCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4504 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella amazonensis SB2B | Sama_3618 | -109 | 4.2 | ATGATCCACTTCAA |
| Shewanella baltica OS155 | Sbal_4131 | -226 | 4.2 | GTGATCTGCCGCAA |
| -132 | 4.8 | ATGATCTAGTTCAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0052 | -225 | 4.6 | GTGATCTGGCGCAA |
| -121 | 3.9 | GGGATCTAGTTCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0100 | -120 | 5 | TTGATCTAGTTCAA |
| Shewanella loihica PV-4 | Shew_0054 | -123 | 4.5 | ATGATCCAGTTCAA |
| Shewanella oneidensis MR-1 | SO4504 | -126 | 4.2 | ATGATCCACTTCAA |
| Shewanella pealeana ATCC 700345 | Spea_4142 | -119 | 5 | TTGATCTAGTTCAA |
| Shewanella piezotolerans WP3 | swp_5034 | -118 | 5 | TTGATCTAGTTCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0342 | -230 | 4.1 | GTGATCTATCGCAA |
| -136 | 4.5 | ATGATCTACTTCAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_4426 | -119 | 4.8 | ATGATCCAGCTCAA |
| Shewanella sp ANA-3 | Shewana3_3911 | -127 | 4.5 | ATGATCCACCTCAA |
| Shewanella sp MR-4 | Shewmr4_3715 | -127 | 4.5 | ATGATCCACCTCAA |
| Shewanella sp MR-7 | Shewmr7_3786 | -127 | 4.5 | ATGATCCACCTCAA |
| Shewanella sp W3-18-1 | Sputw3181_3866 | -136 | 4.5 | ATGATCTACTTCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4818 | -144 | 5.2 | ATGATCTAGCTCAA |
|
Position: -185
Score: 4.3 Sequence: CTGTTCTAGATCAA
Locus tag: Sputw3181_3874
|
||||
| Sputw3181_3874 | -185 | 4.3 | CTGTTCTAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdhX2 | ||||
| Ortholog function: Formate dehydrogenase, subunit or accessory protein | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_0108 | -199 | 3.9 | CTAATTTAGATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0112 | -199 | 3.9 | CAGATTTGGATCAA |
| Shewanella oneidensis MR-1 | SO4512 | -184 | 4.3 | CTGTTCTAGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_4130 | -199 | 3.9 | CGGATTTAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0334 | -184 | 4.3 | CTGTTCTAGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_4418 | -200 | 4.5 | TGGATTTAGATCAA |
| Shewanella sp ANA-3 | Shewana3_3919 | -182 | 4.3 | CTGTTCTAGATCAA |
| Shewanella sp MR-4 | Shewmr4_3723 | -182 | 4.3 | CTGTTCTAGATCAA |
| Shewanella sp MR-7 | Shewmr7_3794 | -182 | 4.3 | CTGTTCTAGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_3874 | -185 | 4.3 | CTGTTCTAGATCAA |