Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Shewanella woodyi ATCC 51908

Reference regulog properties
Source regulog: Fnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella woodyi ATCC 51908
Orthologous TF(s) Swoo_2417
Regulated genes 30
Built upon 541 sites [see more]
Predicted regulatory interactions in Shewanella woodyi ATCC 51908
Locus tag Position Score Sequence
Position: -337
Score: 4.9
Sequence: GTGATCTTGATCAA
Locus tag: Swoo_0178
Swoo_0178 -337 4.9 GTGATCTTGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxB
Ortholog function: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Shewanella amazonensis SB2B Sama_3483 -314 4.9 GTGATCTTGATCAA
Shewanella baltica OS155 Sbal_0154 -313 4.9 GTGATCTTGATCAA
Shewanella denitrificans OS217 Sden_3517 -312 4.9 GTGATCTTGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_0258 -317 4.9 GTGATCTTGATCAA
-209 4.8 ATGATCCAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_0258 -372 4.9 GTGATCTTGATCAA
Shewanella loihica PV-4 Shew_0125 -317 4.9 GTGATCTTGATCAA
Shewanella oneidensis MR-1 SO4606 -313 4.9 GTGATCTTGATCAA
Shewanella pealeana ATCC 700345 Spea_3999 -349 4.9 GTGATCTTGATCAA
-246 4.2 TAGATCCTGATCAA
Shewanella piezotolerans WP3 swp_4823 -366 4.9 GTGATCTTGATCAA
Shewanella putrefaciens CN-32 Sputcn32_3782 -305 4.9 GTGATCTTGATCAA
Shewanella sediminis HAW-EB3 Ssed_0198 -339 5.2 TTGATCTTGATCAA
Shewanella sp ANA-3 Shewana3_3991 -314 4.9 GTGATCTTGATCAA
Shewanella sp MR-4 Shewmr4_3791 -314 4.9 GTGATCTTGATCAA
Shewanella sp MR-7 Shewmr7_3864 -313 4.9 GTGATCTTGATCAA
Shewanella sp W3-18-1 Sputw3181_0133 -305 4.9 GTGATCTTGATCAA
Shewanella woodyi ATCC 51908 Swoo_0178 -337 4.9 GTGATCTTGATCAA
Position: -88
Score: 4.9
Sequence: TTGATTTGAATCAA
Locus tag: Swoo_0239
Swoo_0239 -88 4.9 TTGATTTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfX
Ortholog function: Nitrite reductase, predicted component
Shewanella halifaxensis HAW-EB4 Shal_0300 -96 4.7 TTGATTTGTATCAA
Shewanella pealeana ATCC 700345 Spea_3968 -93 4.7 TTGATTTATATCAA
Shewanella sediminis HAW-EB3 Ssed_0240 -96 4.9 TTGATTTAAATCAA
Shewanella woodyi ATCC 51908 Swoo_0239 -88 4.9 TTGATTTGAATCAA
Position: -135
Score: 4.3
Sequence: GTGATCTGATTCAA
Locus tag: Swoo_0285
Swoo_0285 -135 4.3 GTGATCTGATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shewanella halifaxensis HAW-EB4 Shal_0482 -243 4.3 ATAATTTAGATCAA
Shewanella loihica PV-4 Shew_3424 -136 4.1 GTGATCTGATTCAT
Shewanella pealeana ATCC 700345 Spea_0425 -264 4.3 ATAATTTAGATCAA
Shewanella piezotolerans WP3 swp_4740 -135 4.1 GTGATCTGATTCAT
Shewanella sediminis HAW-EB3 Ssed_0438 -137 4.3 GTGATCTGATTCAA
Shewanella woodyi ATCC 51908 Swoo_0285 -135 4.3 GTGATCTGATTCAA
Position: -134
Score: 4.4
Sequence: GTGATGTGGTTCAA
Locus tag: Swoo_0507
Swoo_0507 -134 4.4 GTGATGTGGTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdC2
Ortholog function: Fumarate reductase, cytochrome b subunit
Shewanella halifaxensis HAW-EB4 Shal_3899 -134 3.9 GTGATCTACGTCTA
Shewanella loihica PV-4 Shew_0332 -122 3.9 GTGATCGACGTCAA
Shewanella pealeana ATCC 700345 Spea_0392 -134 4.4 GTGATCTTGATCTA
Shewanella piezotolerans WP3 swp_0428 -134 4.1 GTGATCTTGCTCTA
Shewanella putrefaciens CN-32 Sputcn32_3441 -108 3.8 GTGAGGTAGCTCAC
Shewanella sediminis HAW-EB3 Ssed_4116 -122 4.3 GTGATCTGCTTCAA
Shewanella sp W3-18-1 Sputw3181_0498 -108 3.8 GTGAGGTAGCTCAC
Shewanella woodyi ATCC 51908 Swoo_0507 -134 4.4 GTGATGTGGTTCAA
Position: -105
Score: 4.1
Sequence: TTGATCTGTCTCAC
Locus tag: Swoo_0508
Swoo_0508 -105 4.1 TTGATCTGTCTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdC1
Ortholog function: Fumarate reductase, cytochrome b subunit
Shewanella baltica OS155 Sbal_3936 -101 4.6 TTGATCTGGCTCAC
Shewanella halifaxensis HAW-EB4 Shal_3898 -134 3.9 GTGATCTACGTCTA
Shewanella loihica PV-4 Shew_0333 -122 3.9 GTGATCGACGTCAA
Shewanella oneidensis MR-1 SO0397 -105 4.3 TTGATCTAACTCAG
Shewanella pealeana ATCC 700345 Spea_0393 -134 4.4 GTGATCTTGATCTA
Shewanella piezotolerans WP3 swp_0429 -134 4.1 GTGATCTTGCTCTA
Shewanella putrefaciens CN-32 Sputcn32_3440 -108 3.8 GTGAGGTAGCTCAC
Shewanella sediminis HAW-EB3 Ssed_4115 -100 4.3 TTGATCTGCCTCAC
Shewanella sp ANA-3 Shewana3_0402 -103 4.3 TTGATCTAACTCAG
Shewanella sp MR-4 Shewmr4_0403 -103 4.3 TTGATCTAACTCAG
Shewanella sp MR-7 Shewmr7_3622 -102 4.3 TTGATCTAACTCAG
Shewanella sp W3-18-1 Sputw3181_0499 -108 3.8 GTGAGGTAGCTCAC
Shewanella woodyi ATCC 51908 Swoo_0508 -134 4.4 GTGATGTGGTTCAA
Position: -101
Score: 4.7
Sequence: GTGATCTTGATCAT
Locus tag: Swoo_0566
Swoo_0566 -101 4.7 GTGATCTTGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifS
Ortholog function: Cysteine desulfurase (EC 2.8.1.7)
Shewanella loihica PV-4 Shew_3354 -113 5.1 ATGATCTTGATCAA
Shewanella pealeana ATCC 700345 Spea_0544 -113 4.7 GTGATCTTGATCAT
Shewanella piezotolerans WP3 swp_4605 -106 4.7 GTGATCTTGATCAT
Shewanella woodyi ATCC 51908 Swoo_0566 -101 4.7 GTGATCTTGATCAT
Position: -145
Score: 5.3
Sequence: TTGATCTAGCTCAA
Locus tag: Swoo_0710
Swoo_0710 -145 5.3 TTGATCTAGCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydD
Ortholog function: Transport ATP-binding protein CydD
Shewanella amazonensis SB2B Sama_2679 -133 4.7 TTGATCCAGCGCAA
Shewanella denitrificans OS217 Sden_0860 -222 4.4 CTGAGCTAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_3589 -229 5.3 TTGATCTAGCTCAA
Shewanella loihica PV-4 Shew_0613 -125 5.3 TTGATCTAGCTCAA
Shewanella pealeana ATCC 700345 Spea_3494 -181 5.3 TTGATCTAGCTCAA
Shewanella sediminis HAW-EB3 Ssed_3849 -135 5.3 TTGATCTAGCTCAA
Shewanella woodyi ATCC 51908 Swoo_0710 -145 5.3 TTGATCTAGCTCAA
Position: -131
Score: 4.6
Sequence: TTGCGGTAGATCAA
Locus tag: Swoo_0971
Swoo_0971 -131 4.6 TTGCGGTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shewanella amazonensis SB2B Sama_0647 -131 4.2 TTGCACAAGATCAA
Shewanella baltica OS155 Sbal_0793 -117 4.9 TTGCGCTAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_0621 -159 4.5 TTGCGCCAGATCAA
Shewanella halifaxensis HAW-EB4 Shal_0885 -130 4.6 TTGCGGTAGATCAA
Shewanella loihica PV-4 Shew_0843 -132 4.5 TTGAGGCAGATCAT
Shewanella oneidensis MR-1 SO3981 -170 4.9 TTGCGCTAGATCAA
Shewanella pealeana ATCC 700345 Spea_0830 -128 4.6 TTGCGGTAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0684 -133 4.5 TTGCGCCAGATCAA
Shewanella sediminis HAW-EB3 Ssed_0930 -132 4.5 ATGCGGTAGATCAA
Shewanella sp ANA-3 Shewana3_0657 -134 4.9 TTGCGCTAGATCAA
Shewanella sp MR-4 Shewmr4_0658 -135 4.9 TTGCGCTAGATCAA
Shewanella sp MR-7 Shewmr7_3364 -135 4.9 TTGCGCTAGATCAA
Shewanella sp W3-18-1 Sputw3181_3487 -133 4.5 TTGCGCCAGATCAA
Shewanella woodyi ATCC 51908 Swoo_0971 -131 4.6 TTGCGGTAGATCAA
Position: -127
Score: 4.6
Sequence: TTGATCTACCGCAA
Locus tag: Swoo_0972
Swoo_0972 -127 4.6 TTGATCTACCGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewanella amazonensis SB2B Sama_0648 -128 4.3 TTGATCTTGTGCAA
Shewanella baltica OS155 Sbal_0794 -122 5 TTGATCTAGCGCAA
Shewanella frigidimarina NCIMB 400 Sfri_0622 -138 4.9 TTGATCTGGCGCAA
Shewanella halifaxensis HAW-EB4 Shal_0886 -125 4.6 TTGATCTACCGCAA
Shewanella loihica PV-4 Shew_0844 -129 4.8 ATGATCTGCCTCAA
Shewanella oneidensis MR-1 SO3980 -122 5 TTGATCTAGCGCAA
Shewanella pealeana ATCC 700345 Spea_0831 -128 4.6 TTGATCTACCGCAA
Shewanella piezotolerans WP3 swp_3958 -123 4.6 TTGATCTAACGCAA
Shewanella putrefaciens CN-32 Sputcn32_0685 -122 4.9 TTGATCTGGCGCAA
Shewanella sediminis HAW-EB3 Ssed_0931 -127 4.4 TTGATCTACCGCAT
Shewanella sp ANA-3 Shewana3_0658 -104 5 TTGATCTAGCGCAA
Shewanella sp MR-4 Shewmr4_0659 -104 5 TTGATCTAGCGCAA
Shewanella sp MR-7 Shewmr7_3363 -104 5 TTGATCTAGCGCAA
Shewanella sp W3-18-1 Sputw3181_3486 -122 4.9 TTGATCTGGCGCAA
Shewanella woodyi ATCC 51908 Swoo_0972 -127 4.6 TTGATCTACCGCAA
Position: -121
Score: 4.7
Sequence: TTGATCTGTCTCAA
Locus tag: Swoo_1260
Swoo_1260 -121 4.7 TTGATCTGTCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella amazonensis SB2B Sama_0895 -109 4.5 ATGATCTGCTTCAA
Shewanella frigidimarina NCIMB 400 Sfri_3609 -121 4.5 GTGATGTGGCTCAT
Shewanella loihica PV-4 Shew_1069 -121 4.1 TTGATCCGCTTCAT
Shewanella sediminis HAW-EB3 Ssed_1165 -120 4.4 TTGATCTACTTCAT
Shewanella woodyi ATCC 51908 Swoo_1260 -121 4.7 TTGATCTGTCTCAA
Position: -334
Score: 4.9
Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.2
Sequence: ATGATGGGGATCTA
Locus tag: Swoo_1565
Swoo_1565 -334 4.9 TTGATTTGAATCAA
-51 4.2 ATGATGGGGATCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Shewanella amazonensis SB2B Sama_2349 -334 4.3 TTGATTTACGTCAA
Shewanella baltica OS155 Sbal_2979 -342 4.9 TTGATTTGCATCAA
Shewanella denitrificans OS217 Sden_1274 -153 5.3 TTGATCTAAATCAA
Shewanella frigidimarina NCIMB 400 Sfri_1142 -338 4.2 ATGATTGTGATCAA
Shewanella halifaxensis HAW-EB4 Shal_1381 -336 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella loihica PV-4 Shew_1302 -341 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella oneidensis MR-1 SO3286 -338 4.9 TTGATTTGAATCAA
Shewanella pealeana ATCC 700345 Spea_1318 -337 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella piezotolerans WP3 swp_1469 -332 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella putrefaciens CN-32 Sputcn32_2641 -339 4.9 TTGATTTGAATCAA
Shewanella sediminis HAW-EB3 Ssed_3118 -336 4.9 TTGATTTGAATCAA
Shewanella sp ANA-3 Shewana3_1241 -338 4.9 TTGATTTGAATCAA
Shewanella sp MR-4 Shewmr4_1239 -338 4.9 TTGATTTGAATCAA
Shewanella sp MR-7 Shewmr7_1310 -338 4.9 TTGATTTGAATCAA
Shewanella sp W3-18-1 Sputw3181_1366 -339 4.9 TTGATTTGAATCAA
Shewanella woodyi ATCC 51908 Swoo_1565 -334 4.9 TTGATTTGAATCAA
-51 4.2 ATGATGGGGATCTA
Position: -70
Score: 4.9
Sequence: TTGATCTAAAGCAA
Locus tag: Swoo_2416
Swoo_2416 -70 4.9 TTGATCTAAAGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspE
Ortholog function: Universal stress protein E
Shewanella amazonensis SB2B Sama_1800 -74 4.6 TTGATCTAAAACAA
Shewanella baltica OS155 Sbal_2210 -72 4.9 TTGATCTAGAACAA
Shewanella baltica OS155 Sbal_4496 -72 4.9 TTGATCTAGAACAA
Shewanella denitrificans OS217 Sden_1842 -69 4.2 TTGATATAGCTCAC
Shewanella frigidimarina NCIMB 400 Sfri_2019 -87 4.6 ATGATCTATCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2206 -73 4.6 TTGATCTAAAACAA
Shewanella loihica PV-4 Shew_1994 -72 4.6 TTGATCTAAAACAA
Shewanella oneidensis MR-1 SO2355 -72 4.9 TTGATCTAGAACAA
Shewanella pealeana ATCC 700345 Spea_2223 -74 4.6 TTGATCTAAAACAA
Shewanella piezotolerans WP3 swp_2581 -71 4.6 TTGATCTAAAACAA
Shewanella putrefaciens CN-32 Sputcn32_1950 -72 4.9 TTGATCTAGAACAA
Shewanella sediminis HAW-EB3 Ssed_2220 -71 4.6 TTGATCTGAAACAA
Shewanella sp ANA-3 Shewana3_2116 -72 4.9 TTGATCTAGAACAA
Shewanella sp MR-4 Shewmr4_2015 -72 4.9 TTGATCTAGAACAA
Shewanella sp MR-7 Shewmr7_1960 -72 4.9 TTGATCTAGAACAA
Shewanella sp W3-18-1 Sputw3181_2055 -72 4.9 TTGATCTAGAACAA
Shewanella woodyi ATCC 51908 Swoo_2416 -70 4.9 TTGATCTAAAGCAA
Position: -16
Score: 4.5
Sequence: TTAAACTAGATCAA
Locus tag: Swoo_2420
Swoo_2420 -16 4.5 TTAAACTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoI
Ortholog function: Cytochrome c oxidase, maturation protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Shewanella amazonensis SB2B Sama_1796 -218 5.3 TTGATCCAGATCAA
Shewanella baltica OS155 Sbal_2206 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella baltica OS155 Sbal_4492 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella denitrificans OS217 Sden_1846 -220 5.3 TTGATCCAGATCAA
-178 5.1 TTGATGTAGCTCAA
Shewanella frigidimarina NCIMB 400 Sfri_2015 -224 5.6 TTGATCTAGATCAA
-182 4.3 TTGACTTAGCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2202 -217 5.6 TTGATCTAGATCAA
-174 4.9 TTGATATAGCTCAA
Shewanella loihica PV-4 Shew_1990 -217 5.6 TTGATCTGGATCAA
-174 4.5 TTGATATTGCTCAA
Shewanella oneidensis MR-1 SO2359 -212 5.6 TTGATCTAGATCAA
-169 4.2 TTGACATGGCTCAA
-106 4.3 TTGACATAGCTCAA
Shewanella pealeana ATCC 700345 Spea_2219 -215 5.6 TTGATCTAGATCAA
-172 4.9 TTGATATAGCTCAA
Shewanella piezotolerans WP3 swp_2577 -217 5.6 TTGATCTAGATCAA
-174 4.3 TTGACATAGCTCAA
Shewanella putrefaciens CN-32 Sputcn32_1954 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella sediminis HAW-EB3 Ssed_2216 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Shewanella sp ANA-3 Shewana3_2112 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-4 Shewmr4_2011 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-7 Shewmr7_1964 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp W3-18-1 Sputw3181_2051 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella woodyi ATCC 51908 Swoo_2420 -16 4.5 TTAAACTAGATCAA
Position: -216
Score: 5.6
Sequence: TTGATCTAGATCAA
Locus tag: Swoo_2425
Swoo_2425 -216 5.6 TTGATCTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Shewanella amazonensis SB2B Sama_1791 -218 5.3 TTGATCCAGATCAA
Shewanella baltica OS155 Sbal_2201 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella baltica OS155 Sbal_4487 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella denitrificans OS217 Sden_1851 -220 5.3 TTGATCCAGATCAA
-178 5.1 TTGATGTAGCTCAA
Shewanella frigidimarina NCIMB 400 Sfri_2010 -224 5.6 TTGATCTAGATCAA
-182 4.3 TTGACTTAGCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2197 -217 5.6 TTGATCTAGATCAA
-174 4.9 TTGATATAGCTCAA
Shewanella loihica PV-4 Shew_1985 -217 5.6 TTGATCTGGATCAA
-174 4.5 TTGATATTGCTCAA
Shewanella oneidensis MR-1 SO2364 -212 5.6 TTGATCTAGATCAA
-169 4.2 TTGACATGGCTCAA
-106 4.3 TTGACATAGCTCAA
Shewanella pealeana ATCC 700345 Spea_2214 -215 5.6 TTGATCTAGATCAA
-172 4.9 TTGATATAGCTCAA
Shewanella piezotolerans WP3 swp_2572 -217 5.6 TTGATCTAGATCAA
-174 4.3 TTGACATAGCTCAA
Shewanella putrefaciens CN-32 Sputcn32_1959 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella sediminis HAW-EB3 Ssed_2211 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Shewanella sp ANA-3 Shewana3_2107 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-4 Shewmr4_2006 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-7 Shewmr7_1969 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp W3-18-1 Sputw3181_2046 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella woodyi ATCC 51908 Swoo_2425 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Position: -95
Score: 4.7
Sequence: TTGCGCTAGATCAT
Locus tag: Swoo_2541
Swoo_2541 -95 4.7 TTGCGCTAGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykA
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Shewanella amazonensis SB2B Sama_1814 -96 4.7 TTGAGATAGATCAT
Shewanella halifaxensis HAW-EB4 Shal_1947 -95 4.7 TTGAGTTAGATCAT
Shewanella loihica PV-4 Shew_2050 -94 4.7 TTGAGATAGATCAT
Shewanella pealeana ATCC 700345 Spea_2337 -95 4.7 TTGAGTTAGATCAT
Shewanella piezotolerans WP3 swp_2388 -95 4.7 TTGAGATAGATCAT
Shewanella sediminis HAW-EB3 Ssed_2068 -95 4.7 TTGCGCTAGATCAT
Shewanella woodyi ATCC 51908 Swoo_2541 -95 4.7 TTGCGCTAGATCAT
Position: -166
Score: 5.4
Sequence: ATGATCTGGATCAA
Locus tag: Swoo_2635
Swoo_2635 -166 5.4 ATGATCTGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narK
Ortholog function: Nitrate/nitrite antiporter
Shewanella halifaxensis HAW-EB4 Shal_0176 -184 4.9 ATGATCTAGGTCAA
Shewanella sediminis HAW-EB3 Ssed_1953 -212 4 GTGAGCTAGTGCAA
-182 5.4 ATGATCTGGATCAA
Shewanella woodyi ATCC 51908 Swoo_2635 -196 3.9 GTGATCTGCTGCAA
-166 5.4 ATGATCTGGATCAA
Position: -223
Score: 5.1
Sequence: TTGATCCAGATCAT
Locus tag: Swoo_2636
Swoo_2636 -223 5.1 TTGATCCAGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: narX
Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Shewanella halifaxensis HAW-EB4 Shal_0175 -209 4.8 TTGACCTAGATCAT
Shewanella sediminis HAW-EB3 Ssed_1952 -201 5.1 TTGATCCAGATCAT
-171 3.8 TTGCACTAGCTCAC
Shewanella sp MR-4 Shewmr4_2224 -341 5.1 TTGATGTAAATCAA
Shewanella sp MR-7 Shewmr7_2300 -341 5.1 TTGATGTAAATCAA
Shewanella woodyi ATCC 51908 Swoo_2636 -223 5.1 TTGATCCAGATCAT
Position: -122
Score: 4.8
Sequence: ATGATCAGGATCAA
Locus tag: Swoo_3049
Swoo_3049 -122 4.8 ATGATCAGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Shewanella amazonensis SB2B Sama_1275 -114 4.6 ATGATCCATATCAA
Shewanella baltica OS155 Sbal_1665 -122 5.2 ATGATCTGGATCAT
Shewanella denitrificans OS217 Sden_1419 -166 5.5 ATGATCTAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_2443 -106 5.4 ATGATCTGGATCAA
Shewanella halifaxensis HAW-EB4 Shal_2692 -123 5.4 ATGATCTGGATCAA
Shewanella loihica PV-4 Shew_2449 -122 5.4 ATGATCTGGATCAA
Shewanella oneidensis MR-1 SO2834 -269 4 TTGATTTTAAGCAT
-121 5.2 ATGATCTGGATCAT
Shewanella pealeana ATCC 700345 Spea_2619 -123 5.4 ATGATCTGGATCAA
Shewanella piezotolerans WP3 swp_3165 -122 5.4 ATGATCTGGATCAA
-62 3.8 TTGATTTAAAGTAA
Shewanella putrefaciens CN-32 Sputcn32_1540 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella sediminis HAW-EB3 Ssed_1600 -122 5 ATGATCGAGATCAA
Shewanella sp ANA-3 Shewana3_2603 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-4 Shewmr4_2441 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-7 Shewmr7_2511 -121 5.2 ATGATCTGGATCAT
Shewanella sp W3-18-1 Sputw3181_2559 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella woodyi ATCC 51908 Swoo_3049 -122 4.8 ATGATCAGGATCAA
Position: -104
Score: 5.2
Sequence: TTGATTTGGATCAA
Locus tag: Swoo_3207
Swoo_3207 -104 5.2 TTGATTTGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella amazonensis SB2B Sama_1371 -105 5.2 TTGATTTGGATCAA
Shewanella baltica OS155 Sbal_1490 -103 5.2 TTGATTTGGATCAA
Shewanella denitrificans OS217 Sden_2589 -153 4.5 GTGAATTAGATCAA
-103 5.3 TTGATCCAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -166 4.6 GTGATCCAAATCAA
-105 5.3 TTGATCTAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_2887 -107 4.4 TTGATTCAGGTCAA
Shewanella oneidensis MR-1 SO1673 -293 4.3 TTGATGTAAATGAA
-106 5.2 TTGATTTGGATCAA
Shewanella pealeana ATCC 700345 Spea_2787 -155 4.3 GTGATCTAGATCCT
-104 5.3 TTGATTTAGATCAA
Shewanella piezotolerans WP3 swp_3395 -107 5.6 TTGATCTAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_1392 -103 5.3 TTGATTTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_1469 -154 3.8 GTGAGCTTGGTCAT
-104 5.6 TTGATCTGGATCAA
Shewanella sp ANA-3 Shewana3_2775 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-4 Shewmr4_2601 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-7 Shewmr7_2668 -103 5.2 TTGATTTGGATCAA
Shewanella sp W3-18-1 Sputw3181_2709 -103 5.3 TTGATTTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3207 -154 4.1 GTGAGTTCGATCAA
-104 5.2 TTGATTTGGATCAA
Position: -78
Score: 4.5
Sequence: TTGTTCCAGATCAA
Locus tag: Swoo_3303
Swoo_3303 -78 4.5 TTGTTCCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shew_2655
Ortholog function: Conserved hypothetical protein
Shewanella halifaxensis HAW-EB4 Shal_3305 -79 4.5 TTGTTTTAGATCAA
Shewanella loihica PV-4 Shew_2655 -80 4.5 TTGTTTTAGATCAA
Shewanella pealeana ATCC 700345 Spea_3233 -79 4.5 TTGTTTTAGATCAA
Shewanella piezotolerans WP3 swp_1107 -128 4.1 ATGATCTTGCTCAC
-79 4.8 TTGTTCTGGATCAA
Shewanella sediminis HAW-EB3 Ssed_3185 -139 4.2 TTGATCTTAATCAC
-90 4.2 TTGTTTCAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3303 -78 4.5 TTGTTCCAGATCAA
Position: -85
Score: 5.4
Sequence: TTGATGTAGATCAA
Locus tag: Swoo_3608
Swoo_3608 -85 5.4 TTGATGTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr2
Ortholog function: Bacterioferritin
Shewanella amazonensis SB2B Sama_2530 -41 5.4 TTGATGTAGATCAA
Shewanella baltica OS155 Sbal_0932 -44 5.3 TTGATTTAGATCAA
Shewanella denitrificans OS217 Sden_0990 -36 4.6 TTGATTTGGATCAC
Shewanella frigidimarina NCIMB 400 Sfri_0957 -37 4.5 TTGATCGAGATCAC
Shewanella halifaxensis HAW-EB4 Shal_3179 -33 5.2 TTGATATAGATCAA
Shewanella loihica PV-4 Shew_2873 -33 5.3 TTGATTTAGATCAA
Shewanella oneidensis MR-1 SO1111 -43 5.3 TTGATTTAGATCAA
Shewanella pealeana ATCC 700345 Spea_3095 -33 5.2 TTGATATAGATCAA
Shewanella piezotolerans WP3 swp_1175 -35 5.2 TTGATATAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0948 -44 5.3 TTGATTTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_2230 -31 5.2 TTGATATAGATCAA
Shewanella sp ANA-3 Shewana3_0946 -43 5.3 TTGATTTAGATCAA
Shewanella sp MR-4 Shewmr4_0944 -42 5.3 TTGATTTAGATCAA
Shewanella sp MR-7 Shewmr7_0982 -43 5.3 TTGATTTAGATCAA
Shewanella sp W3-18-1 Sputw3181_3228 -44 5.3 TTGATTTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3608 -85 5.4 TTGATGTAGATCAA
Position: -151
Score: 4.6
Sequence: TTGATCTTGATCGA
Locus tag: Swoo_4109
Swoo_4109 -151 4.6 TTGATCTTGATCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD
Ortholog function: Periplasmic nitrate reductase component NapD
Shewanella baltica OS155 Sbal_3510 -146 4.7 TTGATCCGGATCGA
Shewanella halifaxensis HAW-EB4 Shal_0716 -241 4 TTAATGTAGCGCAA
-146 4.1 TTGATCTCGGTCTA
Shewanella loihica PV-4 Shew_3205 -150 4.7 TTGATCTCGATCTA
Shewanella oneidensis MR-1 SO0849 -146 4.2 TTGATCCCGATCGA
Shewanella pealeana ATCC 700345 Spea_0624 -240 3.8 TTAATATAGCGCAA
-169 4.9 GTGAACTAGATCAA
-145 4.1 TTGATCTCGGTCTA
Shewanella piezotolerans WP3 swp_4456 -233 4 TTAATGTAGCGCAA
-138 4.1 TTGATCTTGGTCGA
Shewanella putrefaciens CN-32 Sputcn32_3147 -143 4.2 TTGATCCCGATCGA
Shewanella sediminis HAW-EB3 Ssed_3956 -159 4.5 ATGATCTCGATCTA
Shewanella sp ANA-3 Shewana3_3429 -145 4.2 TTGATCCCGATCGA
Shewanella sp MR-4 Shewmr4_0705 -145 4.2 TTGATCCCGATCGA
Shewanella sp MR-7 Shewmr7_3317 -145 4.2 TTGATCCCGATCGA
Shewanella sp W3-18-1 Sputw3181_0796 -143 4.2 TTGATCCCGATCGA
Shewanella woodyi ATCC 51908 Swoo_4109 -151 4.6 TTGATCTTGATCGA
Position: -77
Score: 4.4
Sequence: TTGATCGAGATCAG
Locus tag: Swoo_4146
Swoo_4146 -77 4.4 TTGATCGAGATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_0549
Ortholog function: Conserved hypothetical protein
Shewanella amazonensis SB2B Sama_0549 -135 4.6 TTGATTCACATCAA
-75 4.3 TTGATCAAGATCAG
Shewanella baltica OS155 Sbal_3565 -75 4.3 TTGATCAAGATCAG
Shewanella frigidimarina NCIMB 400 Sfri_0507 -75 4.3 TTGATCAAGATCAG
Shewanella halifaxensis HAW-EB4 Shal_0680 -75 4 TTGACTAAGATCAA
Shewanella loihica PV-4 Shew_3247 -87 4.4 TTGATCGAGATCAG
Shewanella pealeana ATCC 700345 Spea_0593 -138 4.2 ATGATCTACAACAT
-78 4.2 TTGACTGAGATCAA
Shewanella piezotolerans WP3 swp_4510 0 4.4 TTGACCAAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0777 -75 4.2 TTGATCAGGATCAG
Shewanella sediminis HAW-EB3 Ssed_4003 -244 4.2 TTTATCTAGATCAC
-87 4.4 TTGATCGAGATCAG
Shewanella sp ANA-3 Shewana3_0738 -75 4.2 TTGATCAGGATCAG
Shewanella sp W3-18-1 Sputw3181_3398 -75 4.2 TTGATCAGGATCAG
Shewanella woodyi ATCC 51908 Swoo_4146 -77 4.4 TTGATCGAGATCAG
Position: -226
Score: 4.8
Sequence: TTGATGTAGGTCAA
Locus tag: Swoo_4155
Swoo_4155 -226 4.8 TTGATGTAGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0579
Ortholog function: Predicted serine/threonine protein kinase
Shewanella amazonensis SB2B Sama_0541 -118 4.9 TTGATTTGCATCAA
Shewanella baltica OS155 Sbal_0539 -154 4.5 TTGATGTAAGTCAA
Shewanella denitrificans OS217 Sden_0539 -87 4.5 TTGATGCAGGTCAA
Shewanella frigidimarina NCIMB 400 Sfri_3500 -226 4.6 TTGATATAGGTCAA
Shewanella halifaxensis HAW-EB4 Shal_0673 -123 4.8 TTGATGTGTATCAA
Shewanella loihica PV-4 Shew_3263 -124 4.6 TTGATATAGGTCAA
Shewanella oneidensis MR-1 SO0579 -145 4.9 TTGATATAAATCAA
Shewanella pealeana ATCC 700345 Spea_0586 -123 4.8 TTGATATGCATCAA
Shewanella piezotolerans WP3 swp_4517 -140 4.9 TTGATATACATCAA
Shewanella putrefaciens CN-32 Sputcn32_3298 -152 4.3 TTGATATAAGTCAA
Shewanella sediminis HAW-EB3 Ssed_4012 -185 4.6 TTGATATAGGTCAA
Shewanella sp ANA-3 Shewana3_0578 -152 4.9 TTGATATAAATCAA
Shewanella sp MR-4 Shewmr4_0579 -154 4.9 TTGATATAAATCAA
Shewanella sp MR-7 Shewmr7_3451 -154 4.9 TTGATATAAATCAA
Shewanella sp W3-18-1 Sputw3181_0643 -152 4.3 TTGATATAAGTCAA
Shewanella woodyi ATCC 51908 Swoo_4155 -226 4.8 TTGATGTAGGTCAA
Position: -187
Score: 4.6
Sequence: TTGATCCTGAGCAA
Locus tag: Swoo_4793
Swoo_4793 -187 4.6 TTGATCCTGAGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Shewanella amazonensis SB2B Sama_3524 -145 4.6 ATGATCCAGACCAA
Shewanella baltica OS155 Sbal_0284 -152 3.9 GTGATCTAGGTTAA
Shewanella loihica PV-4 Shew_0087 -154 4.2 TTGATCTTAAACAA
Shewanella oneidensis MR-1 SO4452 -185 4.5 TTGAACCTGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0389 -152 4.5 TTGATCTAGGCCAA
Shewanella sediminis HAW-EB3 Ssed_4402 -186 4.9 TTGATCTTGAGCAA
Shewanella sp ANA-3 Shewana3_0274 -152 4.7 TTGAAGCGGATCAA
Shewanella sp MR-4 Shewmr4_0273 -152 4.7 TTGAAGCGGATCAA
Shewanella sp MR-7 Shewmr7_3748 -152 4.7 TTGAAGCGGATCAA
Shewanella sp W3-18-1 Sputw3181_0243 -152 4.5 TTGATCTAGGCCAA
Shewanella woodyi ATCC 51908 Swoo_4793 -187 4.6 TTGATCCTGAGCAA
Position: -162
Score: 4.5
Sequence: TTGCTCAGGATCAA
Locus tag: Swoo_4794
Swoo_4794 -162 4.5 TTGCTCAGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Shewanella amazonensis SB2B Sama_3523 -184 4.6 TTGGTCTGGATCAT
Shewanella loihica PV-4 Shew_0086 -175 3.9 TTGTTTAAGATCAA
Shewanella oneidensis MR-1 SO4453 -198 4.3 TTGATCAGGTTCAA
Shewanella putrefaciens CN-32 Sputcn32_0388 -198 4.2 TTGGCCTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_4403 -177 4.6 TTGCTCAAGATCAA
Shewanella sp ANA-3 Shewana3_0273 -202 4.3 TTGATCCGCTTCAA
Shewanella sp MR-4 Shewmr4_0272 -202 4.3 TTGATCCGCTTCAA
Shewanella sp MR-7 Shewmr7_3749 -202 4.3 TTGATCCGCTTCAA
Shewanella sp W3-18-1 Sputw3181_0242 -198 4.2 TTGGCCTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_4794 -162 4.5 TTGCTCAGGATCAA
Position: -144
Score: 5.2
Sequence: ATGATCTAGCTCAA
Locus tag: Swoo_4818
Swoo_4818 -144 5.2 ATGATCTAGCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4504
Ortholog function: Conserved hypothetical protein
Shewanella amazonensis SB2B Sama_3618 -109 4.2 ATGATCCACTTCAA
Shewanella baltica OS155 Sbal_4131 -226 4.2 GTGATCTGCCGCAA
-132 4.8 ATGATCTAGTTCAA
Shewanella frigidimarina NCIMB 400 Sfri_0052 -225 4.6 GTGATCTGGCGCAA
-121 3.9 GGGATCTAGTTCAA
Shewanella halifaxensis HAW-EB4 Shal_0100 -120 5 TTGATCTAGTTCAA
Shewanella loihica PV-4 Shew_0054 -123 4.5 ATGATCCAGTTCAA
Shewanella oneidensis MR-1 SO4504 -126 4.2 ATGATCCACTTCAA
Shewanella pealeana ATCC 700345 Spea_4142 -119 5 TTGATCTAGTTCAA
Shewanella piezotolerans WP3 swp_5034 -118 5 TTGATCTAGTTCAA
Shewanella putrefaciens CN-32 Sputcn32_0342 -230 4.1 GTGATCTATCGCAA
-136 4.5 ATGATCTACTTCAA
Shewanella sediminis HAW-EB3 Ssed_4426 -119 4.8 ATGATCCAGCTCAA
Shewanella sp ANA-3 Shewana3_3911 -127 4.5 ATGATCCACCTCAA
Shewanella sp MR-4 Shewmr4_3715 -127 4.5 ATGATCCACCTCAA
Shewanella sp MR-7 Shewmr7_3786 -127 4.5 ATGATCCACCTCAA
Shewanella sp W3-18-1 Sputw3181_3866 -136 4.5 ATGATCTACTTCAA
Shewanella woodyi ATCC 51908 Swoo_4818 -144 5.2 ATGATCTAGCTCAA
Position: -159
Score: 5.1
Sequence: TTGAGCTAGATCAT
Locus tag: Swoo_4819
Swoo_4819 -159 5.1 TTGAGCTAGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdhD
Ortholog function: Formate dehydrogenase chain D (EC 1.2.1.2)
Shewanella amazonensis SB2B Sama_3619 -182 4.8 TTGAAGTGGATCAT
Shewanella baltica OS155 Sbal_4130 -183 5 TTGAACTAGATCAT
Shewanella halifaxensis HAW-EB4 Shal_0099 -177 5.2 TTGAACTAGATCAA
Shewanella loihica PV-4 Shew_0053 -186 5 TTGAACTGGATCAT
Shewanella oneidensis MR-1 SO4503 -330 4.8 TTGAAGTGGATCAT
Shewanella pealeana ATCC 700345 Spea_4143 -179 5.2 TTGAACTAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0343 -183 4.8 TTGAAGTAGATCAT
Shewanella sediminis HAW-EB3 Ssed_4427 -149 5 TTGAGCTGGATCAT
Shewanella sp ANA-3 Shewana3_3910 -183 4.8 TTGAGGTGGATCAT
Shewanella sp MR-4 Shewmr4_3714 -183 4.8 TTGAGGTGGATCAT
Shewanella sp MR-7 Shewmr7_3785 -183 4.8 TTGAGGTGGATCAT
Shewanella sp W3-18-1 Sputw3181_3865 -127 4.8 TTGAAGTAGATCAT
Shewanella woodyi ATCC 51908 Swoo_4819 -159 5.1 TTGAGCTAGATCAT
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