Propagation of TyrR regulog to Shewanella woodyi ATCC 51908
| Source regulog: | TyrR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator |
| Biological process: | Amino acid utilization |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella woodyi ATCC 51908 |
| Orthologous TF(s) | Swoo_1717 |
| Regulated genes | 21 |
Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -67
Score: 5.1 Sequence: GTGTAATCTAAAGTTTACAC
Locus tag: Swoo_0894
|
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| Swoo_0894 | -67 | 5.1 | GTGTAATCTAAAGTTTACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: brnQ | ||||
| Ortholog function: Branched-chain amino acid transport system carrier protein | ||||
| Shewanella oneidensis MR-1 | SO_0949 | -121 | 5 | GTGTAAACATAGGTTTGCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_0889 | -107 | 5.1 | GTGTAAACATAGATTTGCAC |
| Shewanella sp W3-18-1 | Sputw3181_3284 | -107 | 5.1 | GTGTAAACATAGATTTGCAC |
| Shewanella sp ANA-3 | Shewana3_3332 | -106 | 5.1 | GTGTAAACATAGATTTGCAC |
| Shewanella sp MR-4 | Shewmr4_0794 | -106 | 5.1 | GTGTAAACATAGATTTGCAC |
| Shewanella sp MR-7 | Shewmr7_3229 | -106 | 5.1 | GTGTAAACATAGATTTGCAC |
| Shewanella baltica OS155 | Sbal_0842 | -107 | 5.1 | GTGTAAACAAAGATTTGCAC |
| Shewanella denitrificans OS217 | Sden_0746 | -229 | 4.1 | GAGTATCGAAAAGTTTACAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_0662 | -122 | 4.8 | GTGTATTTTTAACTTTACAA |
| Shewanella amazonensis SB2B | Sama_2740 | -109 | 4.5 | CTGTAATTCTGGCGTTACAC |
| Shewanella loihica PV-4 | Shew_0769 | -102 | 4.6 | GTGTAATAAGAAGTTTACAC |
| Shewanella pealeana ATCC 700345 | Spea_0804 | -90 | 5.2 | GTGTAAAGTAATAATTACAC |
| Shewanella halifaxensis HAW-EB4 | Shal_0859 | -94 | 5.1 | GTGTAAACTAATCATTACAC |
| Shewanella piezotolerans WP3 | swp_4229 | -153 | 5 | GTGTAAACCAAATATTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_0892 | -106 | 4.6 | GTGTAATTGAAAGTTTACAC |
| Shewanella woodyi ATCC 51908 | Swoo_0894 | -67 | 5.1 | GTGTAATCTAAAGTTTACAC |
|
Position: -178
Score: 3.7 Sequence: AAGGAAACCTTTTCTTACAT
Locus tag: Swoo_0911
|
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| Swoo_0911 | -178 | 3.7 | AAGGAAACCTTTTCTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pep3 | ||||
| Ortholog function: peptidase, M13 family | ||||
| Shewanella oneidensis MR-1 | SO_3844 | -173 | 4.2 | ATGGTAATTTTTAGTTACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0791 | -276 | 3.6 | ATGTTAAGTTTATTTGCCTT |
| Shewanella sp W3-18-1 | Sputw3181_3384 | -276 | 3.6 | ATGTTAAGTTTATTTGCCTT |
| Shewanella sp ANA-3 | Shewana3_0759 | -172 | 4.2 | ATGGTAATTTTTAGTTACAA |
| Shewanella sp MR-4 | Shewmr4_3179 | -173 | 4.2 | ATGGTAATTTTTAGTTACAA |
| Shewanella sp MR-7 | Shewmr7_0787 | -172 | 4.2 | ATGGTAATTTTTAGTTACAA |
| Shewanella baltica OS155 | Sbal_0685 | -173 | 4 | CTGGTAACCTTTAGTTACAT |
| Shewanella denitrificans OS217 | Sden_1089 | -224 | 3.8 | TTGGTTACATAAATTGCCAG |
| Shewanella loihica PV-4 | Shew_2973 | -180 | 4.1 | GAGGAAATCTTTACTTACAT |
| Shewanella pealeana ATCC 700345 | Spea_3177 | -237 | 3.8 | TGGGAAACCTTTTCTTACAC |
| Shewanella halifaxensis HAW-EB4 | Shal_3258 | -202 | 3.9 | TAGGAAACCTTTTCTTACAC |
| Shewanella piezotolerans WP3 | swp_3866 | -189 | 3.9 | TAGGAAACCTTTTCTTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_3509 | -218 | 4 | AAGGAAACCTTTACTTACAC |
| Shewanella woodyi ATCC 51908 | Swoo_0911 | -178 | 3.7 | AAGGAAACCTTTTCTTACAT |
|
Position: -341
Score: 3.6 Sequence: TTGGTAAATTTGTCTGACAA
Locus tag: Swoo_1528
|
||||
| Swoo_1528 | -341 | 3.6 | TTGGTAAATTTGTCTGACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: Malate synthase (EC 2.3.3.9) | ||||
| Shewanella oneidensis MR-1 | SO_1483 | -372 | 3.7 | GTGTAATCATTGTTTTTCGA |
| Shewanella putrefaciens CN-32 | Sputcn32_1238 | -304 | 4.7 | GTGTAATTATAAATTTACGT |
| Shewanella sp W3-18-1 | Sputw3181_2866 | -303 | 4.5 | GTGTAATTATAAATTTACTT |
| Shewanella sp ANA-3 | Shewana3_2943 | -372 | 4.3 | CTGTATATTTAAATTTTCAA |
| Shewanella sp MR-4 | Shewmr4_2767 | -372 | 4.3 | CTGTATAGTTAAATTTTCAA |
| Shewanella sp MR-7 | Shewmr7_2845 | -372 | 3.8 | CTGTACATTTAAATTTTCAG |
| Shewanella baltica OS155 | Sbal_1316 | -380 | 3.6 | CTGTATTAATATATTTACTG |
| Shewanella denitrificans OS217 | Sden_1245 | -324 | 4 | TTGTAAGTTATTATTTACTG |
| Shewanella frigidimarina NCIMB 400 | Sfri_1101 | -458 | 4.4 | tgGTAAAGaaAtATTTACAg |
| Shewanella amazonensis SB2B | Sama_2381 | -450 | 4.1 | TTGTAAATTAAATATTAAAT |
| -364 | 3.7 | GTGTATTAAAAATCTTACAG | ||
| Shewanella loihica PV-4 | Shew_1275 | -393 | 3.4 | CTGTATCGACAAAATTACTA |
| Shewanella pealeana ATCC 700345 | Spea_1290 | -415 | 3.9 | GTGGCAATAATTGTTAACGA |
| Shewanella halifaxensis HAW-EB4 | Shal_1352 | -458 | 4.1 | aTGTAAAagTAtATTgACgC |
| Shewanella piezotolerans WP3 | swp_1433 | -412 | 4.2 | CTGTATTTATAATATTACAC |
| Shewanella sediminis HAW-EB3 | Ssed_1414 | -371 | 4.2 | CTGTAAGTTTATTTTTACGC |
| Shewanella woodyi ATCC 51908 | Swoo_1528 | -401 | 3.9 | GTGTATCATTAAGTTTACTT |
| -341 | 3.6 | TTGGTAAATTTGTCTGACAA | ||
|
Position: -121
Score: 4.6 Sequence: GTGTAACTTTTTGGTTACAA
Locus tag: Swoo_1715
|
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| Swoo_1715 | -121 | 4.6 | GTGTAACTTTTTGGTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phhA | ||||
| Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1) | ||||
| Shewanella oneidensis MR-1 | SO_1666 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella putrefaciens CN-32 | Sputcn32_1386 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp W3-18-1 | Sputw3181_2715 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp ANA-3 | Shewana3_2781 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella sp MR-4 | Shewmr4_2607 | -122 | 4.4 | TTGTAATATTTACTTTACGT |
| Shewanella sp MR-7 | Shewmr7_2674 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella baltica OS155 | Sbal_1484 | -122 | 4.4 | TTGTAATATTTGCTTTACGT |
| Shewanella denitrificans OS217 | Sden_2595 | -127 | 4.4 | TTGTATGCTTAAGTTTACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1328 | -121 | 4.1 | TTGTATTTATTTGTTTACGA |
| Shewanella amazonensis SB2B | Sama_2222 | -123 | 4.3 | TTGTAATAAAAGCTTTACGA |
| Shewanella loihica PV-4 | Shew_1435 | -87 | 4.7 | ATGTAAATTTGAGGTTACAT |
| Shewanella pealeana ATCC 700345 | Spea_1448 | -239 | 4.3 | GTGTCAATTTCTATATACGC |
| -173 | 4.8 | GTGTAACATTAGCATTACAC | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1531 | -133 | 4.3 | GTGTAACAACTTCGTTACAC |
| Shewanella piezotolerans WP3 | swp_1650 | -188 | 4.6 | CTGTAAATTATGGCTTACAA |
| -123 | 4.5 | ATGTAAACTTATGGTTACGC | ||
| Shewanella sediminis HAW-EB3 | Ssed_2930 | -188 | 3.7 | TCGTCAATAAATGGTGACGA |
| -122 | 4.2 | TTGTAAGCAAATTGTTACAC | ||
| Shewanella woodyi ATCC 51908 | Swoo_1715 | -186 | 3.8 | TTGGCAATAATTCAATACGA |
| -121 | 4.6 | GTGTAACTTTTTGGTTACAA | ||
|
Position: -161
Score: 4.6 Sequence: CTGTAAACAAGACTTGCCAC
Locus tag: Swoo_1717
|
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| Swoo_1717 | -161 | 4.6 | CTGTAAACAAGACTTGCCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tyrR | ||||
| Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis | ||||
| Shewanella oneidensis MR-1 | SO_1669 | -190 | 4.7 | CTGTAAACTAGGCTTGCCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1388 | -188 | 4.8 | CTGTAAACTTGACTTGCCAC |
| Shewanella sp W3-18-1 | Sputw3181_2713 | -188 | 4.8 | CTGTAAACTTGACTTGCCAC |
| Shewanella sp ANA-3 | Shewana3_2779 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella sp MR-4 | Shewmr4_2605 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella sp MR-7 | Shewmr7_2672 | -205 | 4.7 | CTGTAAACTAGACTTGCCAC |
| Shewanella baltica OS155 | Sbal_1486 | -196 | 4.7 | CTGTAAACTAGGCTTGCCAC |
| Shewanella denitrificans OS217 | Sden_2593 | -155 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1330 | -92 | 4.7 | CTGTAAACTTCACTTGCCAC |
| Shewanella amazonensis SB2B | Sama_2220 | -134 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella loihica PV-4 | Shew_1437 | -162 | 4.7 | GTGTAAACAACTCTTGCCAC |
| Shewanella pealeana ATCC 700345 | Spea_1450 | -158 | 4.6 | CTGTAAACAAGTCTTGCCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1533 | -159 | 4.1 | CTGTAAACAAGCCTTGCCAC |
| Shewanella piezotolerans WP3 | swp_1652 | -309 | 4.6 | cTGTAAAcaagtCTTgcCAC |
| Shewanella sediminis HAW-EB3 | Ssed_2928 | -151 | 4.6 | CTGTAAACAAGACTTGCCAC |
| Shewanella woodyi ATCC 51908 | Swoo_1717 | -161 | 4.6 | CTGTAAACAAGACTTGCCAC |
|
Position: -256
Score: 4.2 Sequence: ATGTAACAAGAGATTGCCAC
Position: -172
Score: 4.8 Sequence: CTGTAATTATTTATTTACAA
Locus tag: Swoo_1718
|
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| Swoo_1718 | -256 | 4.2 | ATGTAACAAGAGATTGCCAC | |
| -172 | 4.8 | CTGTAATTATTTATTTACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmgC | ||||
| Ortholog function: Fumarylacetoacetase (EC 3.7.1.2) | ||||
| Shewanella oneidensis MR-1 | SO_1670 | -323 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -239 | 4.3 | ACGTAATGATTAGTTTACAG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1389 | -352 | 3.9 | ATGTAACCGTATCGTTCCAC |
| -268 | 4 | ACGTAATGATTAGTTTACGA | ||
| Shewanella sp W3-18-1 | Sputw3181_2712 | -352 | 3.9 | ATGTAACCGTATCGTTCCAC |
| -268 | 4 | ACGTAATGATTAGTTTACGA | ||
| Shewanella sp ANA-3 | Shewana3_2778 | -320 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -236 | 4.4 | ACGTAATGATTAGTTTACAA | ||
| Shewanella sp MR-4 | Shewmr4_2604 | -319 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -235 | 4.4 | ACGTAATGATTAGTTTACAA | ||
| Shewanella sp MR-7 | Shewmr7_2671 | -319 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -235 | 4.4 | ACGTAATGATTAGTTTACAA | ||
| Shewanella baltica OS155 | Sbal_1487 | -358 | 3.8 | ATGTAACAGTATCGTTCCAC |
| -274 | 4 | ACGTAATGATTAGTTTACGA | ||
| Shewanella denitrificans OS217 | Sden_2592 | -228 | 4.1 | ATGTAACGAATTAGTGCCAT |
| -146 | 4.1 | TTGTACTGAAAAGTTTACAG | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1331 | -155 | 4.9 | TTGTAACGAATAATTTACAA |
| Shewanella amazonensis SB2B | Sama_2219 | -234 | 4.3 | GTGTAAAAAGAATTTGCCAG |
| -150 | 4.4 | CTGTATTTAAAAGTTTACAA | ||
| Shewanella loihica PV-4 | Shew_1438 | -169 | 4.5 | CTGTCATGAATTGTTTACAA |
| Shewanella pealeana ATCC 700345 | Spea_1451 | -197 | 4.8 | GTGTATCTATAAGTTTACAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1534 | -183 | 4.7 | CTGTAAGTATAAGTTTACAA |
| Shewanella piezotolerans WP3 | swp_1653 | -179 | 4.8 | CTGTAATTATATGTTTACAA |
| Shewanella sediminis HAW-EB3 | Ssed_2927 | -238 | 4 | ATGTAAAAGCTTGTTGCCAC |
| -155 | 4 | GTGTAACTGTTTATTTACGT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1718 | -256 | 4.2 | ATGTAACAAGAGATTGCCAC |
| -172 | 4.8 | CTGTAATTATTTATTTACAA | ||
|
Position: -171
Score: 4 Sequence: ATGTAAAGCTAAACATACGG
Locus tag: Swoo_2278
|
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| Swoo_2278 | -171 | 4 | ATGTAAAGCTAAACATACGG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bkdA1 | ||||
| Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) | ||||
| Shewanella oneidensis MR-1 | SO_2339 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1885 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella sp W3-18-1 | Sputw3181_2123 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella sp ANA-3 | Shewana3_2131 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella sp MR-4 | Shewmr4_2028 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella sp MR-7 | Shewmr7_1947 | -160 | 4.8 | TTGTAAAGCATTATATACAT |
| Shewanella baltica OS155 | Sbal_4508 | -160 | 4.9 | TTGTAAAGCAATATATACAT |
| Shewanella denitrificans OS217 | Sden_1786 | -153 | 4.5 | GCGTAAAGCAAATTATACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1935 | -156 | 4.5 | TCGTAAAGCAATATATACAT |
| Shewanella amazonensis SB2B | Sama_1709 | -150 | 4.3 | CTGTAAAGCAATTAATACAT |
| Shewanella loihica PV-4 | Shew_1925 | -175 | 4.7 | TTGTAAAGCTAGCGATACAT |
| Shewanella pealeana ATCC 700345 | Spea_2246 | -161 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2234 | -161 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella piezotolerans WP3 | swp_2606 | -162 | 4.8 | ATGTAAACCAATATATACAT |
| Shewanella sediminis HAW-EB3 | Ssed_2329 | -172 | 4.4 | TTGTAAAGCTAAAGATACGC |
| Shewanella woodyi ATCC 51908 | Swoo_2278 | -171 | 4 | ATGTAAAGCTAAACATACGG |
|
Position: -178
Score: 3.7 Sequence: TTTAAAAGCAAACTTGCCAA
Position: -153
Score: 3.8 Sequence: GTGGAAGAAAAACATGCCAG
Locus tag: Swoo_2308
|
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| Swoo_2308 | -178 | 3.7 | TTTAAAAGCAAACTTGCCAA | |
| -153 | 3.8 | GTGGAAGAAAAACATGCCAG | ||
| Supported by regulated orthologs from reference regulons | ||||