Propagation of TreR regulog to Shewanella woodyi ATCC 51908
| Source regulog: | TreR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Trehalose utilization |
| Effector: | Trehalose |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella woodyi ATCC 51908 |
| Orthologous TF(s) | Swoo_1435 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -160
Score: 6.4 Sequence: AAATGCAAACGATTGCAAAA
Locus tag: Swoo_1434
|
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| Swoo_1434 | -160 | 6.4 | AAATGCAAACGATTGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp(Tre) | ||||
| Ortholog function: Trehalose-regulated TonB-dependent outer membrane receptor | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3503 | -133 | 6.5 | AAATGCAAACGTTTGCATAA |
| -110 | 6.4 | TATTGCAAACGTTTGCATTG | ||
| Shewanella woodyi ATCC 51908 | Swoo_1434 | -160 | 6.4 | AAATGCAAACGATTGCAAAA |
| -137 | 6 | AATTGCAATCGTTTGCAAGC | ||
|
Position: -83
Score: 6.4 Sequence: TTTTGCAATCGTTTGCATTT
Locus tag: Swoo_1435
|
||||
| Swoo_1435 | -83 | 6.4 | TTTTGCAATCGTTTGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treR | ||||
| Ortholog function: Transcriptional regulator of trehalose utilization, LacI family | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3504 | -126 | 6.4 | CAATGCAAACGTTTGCAATA |
| -103 | 6.5 | TTATGCAAACGTTTGCATTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1435 | -106 | 6 | GCTTGCAAACGATTGCAATT |
| -83 | 6.4 | TTTTGCAATCGTTTGCATTT | ||
|
Position: -73
Score: 6.4 Sequence: TTTTGCAATCGTTTGCAAAA
Locus tag: Swoo_1437
|
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| Swoo_1437 | -73 | 6.4 | TTTTGCAATCGTTTGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treP | ||||
| Ortholog function: Trehalose phosphorylase (EC 2.4.1.64) | ||||
| Shewanella woodyi ATCC 51908 | Swoo_1437 | -73 | 6.4 | TTTTGCAATCGTTTGCAAAA |
|
Position: -175
Score: 6.4 Sequence: TTTTGCAAACGATTGCAAAA
Locus tag: Swoo_1438
|
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| Swoo_1438 | -175 | 6.4 | TTTTGCAAACGATTGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treT | ||||
| Ortholog function: Predicted trehalose permease, MFS family, FucP subfamily | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3505 | -72 | 6.5 | AAATGCAAACGATTGCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_1438 | -175 | 6.4 | TTTTGCAAACGATTGCAAAA |