Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of TreR regulog to Shewanella woodyi ATCC 51908

Reference regulog properties
Source regulog: TreR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Trehalose utilization
Effector: Trehalose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella woodyi ATCC 51908
Orthologous TF(s) Swoo_1435
Regulated genes 4
Built upon 11 sites [see more]
Predicted regulatory interactions in Shewanella woodyi ATCC 51908
Locus tag Position Score Sequence
Position: -160
Score: 6.4
Sequence: AAATGCAAACGATTGCAAAA
Locus tag: Swoo_1434
Swoo_1434 -160 6.4 AAATGCAAACGATTGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp(Tre)
Ortholog function: Trehalose-regulated TonB-dependent outer membrane receptor
Shewanella frigidimarina NCIMB 400 Sfri_3503 -133 6.5 AAATGCAAACGTTTGCATAA
-110 6.4 TATTGCAAACGTTTGCATTG
Shewanella woodyi ATCC 51908 Swoo_1434 -160 6.4 AAATGCAAACGATTGCAAAA
-137 6 AATTGCAATCGTTTGCAAGC
Position: -83
Score: 6.4
Sequence: TTTTGCAATCGTTTGCATTT
Locus tag: Swoo_1435
Swoo_1435 -83 6.4 TTTTGCAATCGTTTGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: treR
Ortholog function: Transcriptional regulator of trehalose utilization, LacI family
Shewanella frigidimarina NCIMB 400 Sfri_3504 -126 6.4 CAATGCAAACGTTTGCAATA
-103 6.5 TTATGCAAACGTTTGCATTT
Shewanella woodyi ATCC 51908 Swoo_1435 -106 6 GCTTGCAAACGATTGCAATT
-83 6.4 TTTTGCAATCGTTTGCATTT
Position: -73
Score: 6.4
Sequence: TTTTGCAATCGTTTGCAAAA
Locus tag: Swoo_1437
Swoo_1437 -73 6.4 TTTTGCAATCGTTTGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: Trehalose phosphorylase (EC 2.4.1.64)
Shewanella woodyi ATCC 51908 Swoo_1437 -73 6.4 TTTTGCAATCGTTTGCAAAA
Position: -175
Score: 6.4
Sequence: TTTTGCAAACGATTGCAAAA
Locus tag: Swoo_1438
Swoo_1438 -175 6.4 TTTTGCAAACGATTGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treT
Ortholog function: Predicted trehalose permease, MFS family, FucP subfamily
Shewanella frigidimarina NCIMB 400 Sfri_3505 -72 6.5 AAATGCAAACGATTGCATTA
Shewanella woodyi ATCC 51908 Swoo_1438 -175 6.4 TTTTGCAAACGATTGCAAAA
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