Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PdhR regulog to Shewanella woodyi ATCC 51908

Reference regulog properties
Source regulog: PdhR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Pyruvate metabolism
Effector: Pyruvate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella woodyi ATCC 51908
Orthologous TF(s) Swoo_0318
Regulated genes 6
Built upon 109 sites [see more]
Predicted regulatory interactions in Shewanella woodyi ATCC 51908
Locus tag Position Score Sequence
Position: -39
Score: 6.4
Sequence: AATTGGTAAGACCAATT
Locus tag: Swoo_0318
Swoo_0318 -39 6.4 AATTGGTAAGACCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
Shewanella oneidensis MR-1 SO_0423 -175 4.5 TAATGGTCTGACCCCTT
-38 6.4 AATTGGTAAGACCAATT
Shewanella putrefaciens CN-32 Sputcn32_3418 -194 4.4 AAATGGTCTGACCCCAT
-38 6.4 AATTGGTAAGACCAATT
Shewanella sp W3-18-1 Sputw3181_0525 -194 4.4 AAATGGTCTGACCCCAT
-38 6.4 AATTGGTAAGACCAATT
Shewanella sp ANA-3 Shewana3_0425 -38 6.4 AATTGGTAAGACCAATT
Shewanella sp MR-4 Shewmr4_0427 -175 4.4 AAATGGTCTGACCCCAT
-38 6.4 AATTGGTAAGACCAATT
Shewanella sp MR-7 Shewmr7_3600 -175 4.4 AAATGGTCTGACCCCAT
-38 6.4 AATTGGTAAGACCAATT
Shewanella baltica OS155 Sbal_3914 -175 4.4 AAATGGTCTGACCCCAT
-38 6.4 AATTGGTAAGACCAATT
Shewanella denitrificans OS217 Sden_3384 -185 4.8 AAATGGTCTGACCCCTT
-38 6.4 AATTGGTAAGACCAATT
Shewanella frigidimarina NCIMB 400 Sfri_3778 -186 4.8 AAATGGTCTGACCCCTT
-49 6.4 AATTGGTAAGACCAATT
Shewanella amazonensis SB2B Sama_0374 -152 4.8 AATTGGTCTGACCCCAT
-39 6.4 AATTGGTAAGACCAATT
Shewanella loihica PV-4 Shew_3432 -39 6.4 AATTGGTAAGACCAATT
Shewanella pealeana ATCC 700345 Spea_0418 -158 4.2 CATTGGTCAGACCCCAT
-39 6.4 AATTGGTAAGACCAATT
Shewanella halifaxensis HAW-EB4 Shal_0475 -157 4.4 CATTGGTCTGACCCCTA
-39 6.4 AATTGGTAAGACCAATT
Shewanella piezotolerans WP3 swp_4753 -158 4.2 CATTGGTCTGACCCCAT
-39 6.4 AATTGGTAAGACCAATT
Shewanella sediminis HAW-EB3 Ssed_0430 -158 4.5 TAATGGTCAGACCCCTT
-39 6.4 AATTGGTAAGACCAATT
Shewanella woodyi ATCC 51908 Swoo_0318 -159 4.3 TAATGGTCTGACCGCTA
-39 6.4 AATTGGTAAGACCAATT
Position: -143
Score: 6.3
Sequence: AATTGGTAATACCAATT
Locus tag: Swoo_0636
Swoo_0636 -143 6.3 AATTGGTAATACCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: Cold-shock DEAD-box protein A
Shewanella pealeana ATCC 700345 Spea_0566 -142 6.3 AATTGGTATTACCAATT
Shewanella halifaxensis HAW-EB4 Shal_0628 -142 6 GATTGGTATTACCAATT
Shewanella piezotolerans WP3 swp_4551 -141 5.9 AAATGGTAATACCAATT
Shewanella sediminis HAW-EB3 Ssed_4029 -141 6.3 AATTGGTAATACCAATT
Shewanella woodyi ATCC 51908 Swoo_0636 -143 6.3 AATTGGTAATACCAATT
Position: -335
Score: 5.2
Sequence: AATTTGTCTGACAAATT
Locus tag: Swoo_1528
Swoo_1528 -335 5.2 AATTTGTCTGACAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: Malate synthase (EC 2.3.3.9)
Shewanella oneidensis MR-1 SO_1483 -306 4.6 AAGTTGTCTGACAAATT
-214 5.7 TGTTGGTCAGACCAATT
Shewanella putrefaciens CN-32 Sputcn32_1238 -145 5.7 GTTTGGTCTGACCAATT
Shewanella sp W3-18-1 Sputw3181_2866 -144 5.7 GTTTGGTCTGACCAATT
Shewanella sp ANA-3 Shewana3_2943 -306 4.6 AAGTTGTCTGACAAATT
-214 5.8 TCTTGGTCAGACCAATT
Shewanella sp MR-4 Shewmr4_2767 -306 4.6 AAGTTGTCTGACAAATT
-214 5.8 TCTTGGTCAGACCAATT
Shewanella sp MR-7 Shewmr7_2845 -306 4.6 AAGTTGTCTGACAAATT
-214 5.8 TCTTGGTCAGACCAATT
Shewanella baltica OS155 Sbal_1316 -221 5.7 GCTTGGTCAGACCAATT
Shewanella denitrificans OS217 Sden_1245 -258 5.5 CCTTGGTCATACCAATT
-166 5.7 GCTTGGTCTTACCAATT
Shewanella frigidimarina NCIMB 400 Sfri_1101 -299 5.2 TGTTGGTAAGACCATTT
Shewanella amazonensis SB2B Sama_2381 -298 5.1 TGTTGGTAAGACAAATT
-205 5.7 GTTTGGTCTGACCAATT
Shewanella loihica PV-4 Shew_1275 -233 5.6 GTTTGGTCTTACCAATT
Shewanella pealeana ATCC 700345 Spea_1290 -349 4.6 AATTTGTCTTACAAGTT
Shewanella sediminis HAW-EB3 Ssed_1414 -305 4.7 CATTTGTCTGACAAATT
-215 5.6 GATTGGTCATACCATTT
Shewanella woodyi ATCC 51908 Swoo_1528 -335 5.2 AATTTGTCTGACAAATT
Position: -214
Score: 6.4
Sequence: AATTGGTCTTACCAATT
Locus tag: Swoo_2882
Swoo_2882 -214 6.4 AATTGGTCTTACCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pflX
Ortholog function: pyruvate formate lyase-related hypothetical transporter
Shewanella putrefaciens CN-32 Sputcn32_2377 -202 6.4 AATTGGTCAGACCAATT
Shewanella sp W3-18-1 Sputw3181_1632 -202 6.4 AATTGGTCAGACCAATT
Shewanella denitrificans OS217 Sden_2405 -180 6.1 AATTGGTCTTACCAATA
Shewanella frigidimarina NCIMB 400 Sfri_2472 -203 5.8 AATTGGTCTTACCAAGA
Shewanella amazonensis SB2B Sama_1499 -180 6.4 AATTGGTATGACCAATT
Shewanella loihica PV-4 Shew_2389 -205 6.4 AATTGGTCAGACCAATT
Shewanella pealeana ATCC 700345 Spea_1673 -215 6.4 AATTGGTCTTACCAATT
Shewanella halifaxensis HAW-EB4 Shal_2591 -216 6.4 AATTGGTCTTACCAATT
Shewanella piezotolerans WP3 swp_1953 -215 6.4 AATTGGTCTTACCAATT
Shewanella sediminis HAW-EB3 Ssed_1709 -215 6.4 AATTGGTCTTACCAATT
Shewanella woodyi ATCC 51908 Swoo_2882 -214 6.4 AATTGGTCTTACCAATT
Position: -235
Score: 6.4
Sequence: AATTGGTCTTACCAATT
Locus tag: Swoo_2883
Swoo_2883 -235 6.4 AATTGGTCTTACCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pflB
Ortholog function: Pyruvate formate-lyase (EC 2.3.1.54)
Shewanella oneidensis MR-1 SO_2912 -247 6.4 AATTGGTCTTACCAATT
Shewanella putrefaciens CN-32 Sputcn32_2378 -256 6.4 AATTGGTCTTACCAATT
Shewanella sp W3-18-1 Sputw3181_1631 -256 6.4 AATTGGTCTTACCAATT
Shewanella sp ANA-3 Shewana3_1555 -246 6.4 AATTGGTCTTACCAATT
Shewanella sp MR-4 Shewmr4_1494 -246 6.4 AATTGGTCTTACCAATT
Shewanella sp MR-7 Shewmr7_1561 -246 6.4 AATTGGTCTTACCAATT
Shewanella baltica OS155 Sbal_2671 -245 6.4 AATTGGTCTTACCAATT
Shewanella denitrificans OS217 Sden_2406 -165 6.1 AATTGGTCTTACCAATA
Shewanella frigidimarina NCIMB 400 Sfri_2473 -216 5.9 AATTGGTCTTACCATTT
Shewanella amazonensis SB2B Sama_1498 -163 6.4 AATTGGTCTTACCAATT
Shewanella loihica PV-4 Shew_2390 -242 6.4 AATTGGTCTTACCAATT
Shewanella pealeana ATCC 700345 Spea_1672 -229 6.4 AATTGGTCTTACCAATT
Shewanella halifaxensis HAW-EB4 Shal_2592 -238 6.4 AATTGGTCTTACCAATT
Shewanella piezotolerans WP3 swp_1952 -222 6.4 AATTGGTCTTACCAATT
Shewanella sediminis HAW-EB3 Ssed_1708 -240 6.4 AATTGGTCTTACCAATT
Shewanella woodyi ATCC 51908 Swoo_2883 -235 6.4 AATTGGTCTTACCAATT
Position: -243
Score: 5.7
Sequence: TTTTGGTATGACCAATT
Locus tag: Swoo_3337
Swoo_3337 -243 5.7 TTTTGGTATGACCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: oadG
Ortholog function: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Shewanella putrefaciens CN-32 Sputcn32_1029 -246 5.6 ACATGGTAAGACCAATT
Shewanella sp W3-18-1 Sputw3181_3136 -246 5.6 ACATGGTAAGACCAATT
Shewanella sp ANA-3 Shewana3_3166 -111 6.4 AATTGGTCTTACCAATT
Shewanella sp MR-4 Shewmr4_2987 -79 6.4 AATTGGTCTTACCAATT
Shewanella sp MR-7 Shewmr7_3069 -110 6.4 AATTGGTCTTACCAATT
Shewanella baltica OS155 Sbal_1024 -251 6.1 TATTGGTAAGACCAATT
Shewanella frigidimarina NCIMB 400 Sfri_1065 -299 5.7 TTTTGGTAAGACCAATT
Shewanella amazonensis SB2B Sama_1051 -169 6.1 TATTGGTAAGACCAATT
Shewanella loihica PV-4 Shew_1219 -202 6 ATTTGGTAAGACCAATT
Shewanella pealeana ATCC 700345 Spea_1198 -195 5.2 TTATGGTATGACCAATT
Shewanella halifaxensis HAW-EB4 Shal_1235 -196 4.7 TTATGGTACGACCAATT
Shewanella piezotolerans WP3 swp_1378 -258 6.1 TATTGGTATGACCAATT
Shewanella sediminis HAW-EB3 Ssed_1320 -148 6.1 TATTGGTATGACCAATT
Shewanella woodyi ATCC 51908 Swoo_3337 -243 5.7 TTTTGGTATGACCAATT
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