Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Shewanella woodyi ATCC 51908

Reference regulog properties
Source regulog: NarP - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella woodyi ATCC 51908
Orthologous TF(s) Swoo_0970
Regulated genes 15
Built upon 249 sites [see more]
Predicted regulatory interactions in Shewanella woodyi ATCC 51908
Locus tag Position Score Sequence
Position: -160
Score: 5.2
Sequence: TACCCCTTATGAGGTA
Locus tag: Swoo_0971
Swoo_0971 -160 5.2 TACCCCTTATGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shewanella oneidensis MR-1 SO3981 -199 5.1 TACCTCTTAGGGGGTA
Shewanella putrefaciens CN-32 Sputcn32_0684 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp W3-18-1 Sputw3181_3487 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp ANA-3 Shewana3_0657 -163 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-4 Shewmr4_0658 -164 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-7 Shewmr7_3364 -164 5.1 TACCTCTTAGGGGGTA
Shewanella baltica OS155 Sbal_0793 -146 5.1 TACCTCTTAGGGGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0621 -188 5.1 TACCCCTTATGGGGTA
Shewanella amazonensis SB2B Sama_0647 -160 4.9 TACCCATTAAGTGGTA
Shewanella loihica PV-4 Shew_0843 -161 5.1 TACCCCTTATGGGGTA
Shewanella pealeana ATCC 700345 Spea_0830 -157 5 TACCTCCTATGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0885 -159 4.7 TACCTCCAACGAGGTA
Shewanella piezotolerans WP3 swp_3960 -263 5.1 TACCCCTTATGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0930 -161 4.9 TACCCCTAAGGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0971 -160 5.2 TACCCCTTATGAGGTA
Position: -100
Score: 5
Sequence: TACCTCATAAGGGGTA
Locus tag: Swoo_0972
Swoo_0972 -100 5 TACCTCATAAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewanella oneidensis MR-1 SO3980 -95 5.2 TACCCCCTAAGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_0685 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp W3-18-1 Sputw3181_3486 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp ANA-3 Shewana3_0658 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-4 Shewmr4_0659 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-7 Shewmr7_3363 -77 5.2 TACCCCCTAAGAGGTA
Shewanella baltica OS155 Sbal_0794 -95 5.2 TACCCCCTAAGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0622 -111 5 TACCCCATAAGGGGTA
Shewanella amazonensis SB2B Sama_0648 -101 5 TACCACTTAATGGGTA
Shewanella loihica PV-4 Shew_0844 -102 5 TACCCCATAAGGGGTA
Shewanella pealeana ATCC 700345 Spea_0831 -101 4.9 TACCTCATAGGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0886 -98 4.7 TACCTCGTTGGAGGTA
Shewanella piezotolerans WP3 swp_3958 -96 5 TACCCCATAAGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0931 -100 5 TACCCCCTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0972 -100 5 TACCTCATAAGGGGTA
Position: -157
Score: 4.4
Sequence: TACCAAGTTAGAGGTA
Locus tag: Swoo_2682
Swoo_2682 -157 4.4 TACCAAGTTAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napE2
Ortholog function: Periplasmic nitrate reductase component NapE
Shewanella putrefaciens CN-32 Sputcn32_1901 -145 4.4 TACCGATTTGGAGGTA
Shewanella sp W3-18-1 Sputw3181_2107 -145 4.4 TACCGATTTGGAGGTA
Shewanella sp MR-4 Shewmr4_1840 -137 4.4 TACCGATTTGGAGGTA
Shewanella sp MR-7 Shewmr7_2137 -137 4.4 TACCGATTTGGAGGTA
Shewanella baltica OS155 Sbal_1908 -144 4.6 TACCAATTTGGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_2555 -119 4.3 TACCAATTTGTGAGTA
Shewanella amazonensis SB2B Sama_1620 -106 4.5 TACCGATTTAGGGGTA
Shewanella loihica PV-4 Shew_1768 -153 4.5 TACCGATTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_2682 -157 4.4 TACCAAGTTAGAGGTA
Position: -209
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Swoo_3124
Swoo_3124 -209 5.1 TACCCCTAAAGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omcA
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shewanella pealeana ATCC 700345 Spea_2697 -184 5.1 TACCCCTAAAGAAATA
Shewanella woodyi ATCC 51908 Swoo_3124 -209 5.1 TACCCCTAAAGAAATA
Position: -218
Score: 5
Sequence: TACCCCTTTATAAATA
Locus tag: Swoo_3125
Swoo_3125 -218 5 TACCCCTTTATAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -204 5.2 TACCTCTTTAGAAATA
Shewanella putrefaciens CN-32 Sputcn32_1478 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp W3-18-1 Sputw3181_2623 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp ANA-3 Shewana3_2676 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-4 Shewmr4_2510 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-7 Shewmr7_2578 -203 5.2 TACCTCTTTAGAAATA
Shewanella baltica OS155 Sbal_1589 -204 5.2 TACCTCTTTAGAAATA
Shewanella frigidimarina NCIMB 400 Sfri_2637 -178 4.9 TACCTCTTTATTAATA
Shewanella amazonensis SB2B Sama_1208 -192 4.9 TACCCCTTTTGAAATA
-133 5 TACCCCCTATGAGGTA
Shewanella loihica PV-4 Shew_2525 -193 5.2 TACCCCTTTAGAAATA
Shewanella pealeana ATCC 700345 Spea_2698 -195 5.2 TACCTCTTTAGAAATA
Shewanella halifaxensis HAW-EB4 Shal_2784 -194 5.2 TACCTCTTTAGAAATA
Shewanella piezotolerans WP3 swp_3278 -193 5.1 TACCTCTTTATAAATA
Shewanella sediminis HAW-EB3 Ssed_1525 -205 5 TACCCCTTTATAAATA
Shewanella woodyi ATCC 51908 Swoo_3125 -218 5 TACCCCTTTATAAATA
Position: -133
Score: 4.1
Sequence: TATCTATAAGTGGGTA
Locus tag: Swoo_3207
Swoo_3207 -133 4.1 TATCTATAAGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella oneidensis MR-1 SO1673 -135 4.6 TACCTAAAAATAAGTA
Shewanella putrefaciens CN-32 Sputcn32_1392 -242 4.1 TAACCCTTACTAGGTG
-132 4.6 TACCTATAAGTGGGTA
Shewanella sp W3-18-1 Sputw3181_2709 -242 4.2 TAACCCTTATTAGGTG
-132 4.6 TACCTATAAGTGGGTA
Shewanella sp ANA-3 Shewana3_2775 -132 4.8 TACCTCAAAATAAGTA
Shewanella sp MR-4 Shewmr4_2601 -132 4.8 TACCTCAAAATAAGTA
Shewanella sp MR-7 Shewmr7_2668 -132 4.8 TACCTCAAAATAAGTA
Shewanella baltica OS155 Sbal_1490 -132 4.5 TACCTATAAGTGAGTA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -132 5 TACCTCTATAGTAGTA
Shewanella amazonensis SB2B Sama_1371 -134 4.5 TACCCCAAAGTGGGTA
Shewanella pealeana ATCC 700345 Spea_2787 -133 3.9 TATCTCGAAGTGGGTA
Shewanella piezotolerans WP3 swp_3395 -136 4.6 TATCTCTAAATGGGTA
Shewanella sediminis HAW-EB3 Ssed_1469 -133 4 TATCTATAACTGGGTA
Shewanella woodyi ATCC 51908 Swoo_3207 -133 4.1 TATCTATAAGTGGGTA
Position: -164
Score: 5
Sequence: TACCACTTTATAGGTA
Position: -150
Score: 4.8
Sequence: TACCACTTAATTAGTA
Locus tag: Swoo_3303
Swoo_3303 -164 5 TACCACTTTATAGGTA
-150 4.8 TACCACTTAATTAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shew_2655
Ortholog function: Conserved hypothetical protein
Shewanella loihica PV-4 Shew_2655 -166 5 TACCACTTTAGAGATA
-152 4.3 TACCTCTAATTCAGTA
Shewanella pealeana ATCC 700345 Spea_3233 -165 4.5 TACCTACTTGTAGGTA
-151 4.4 TATCCCTAAATTAGTA
Shewanella halifaxensis HAW-EB4 Shal_3305 -165 4.3 TACCTATTTGTGTGTA
-151 4.6 TACCTCTAAATCGGTA
Shewanella piezotolerans WP3 swp_1107 -165 5 TACCCATTTATAGGTA
-151 4.9 TACCTCTAAATTAGTA
Shewanella sediminis HAW-EB3 Ssed_3185 -176 4.6 TACTACTTTAGGAGTA
-162 5 TACCTCCTTATAAGTA
Shewanella woodyi ATCC 51908 Swoo_3303 -164 5 TACCACTTTATAGGTA
-150 4.8 TACCACTTAATTAGTA
Position: -124
Score: 5
Sequence: TACCCCTTACTAGGTA
Locus tag: Swoo_4109
Swoo_4109 -124 5 TACCCCTTACTAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD
Ortholog function: Periplasmic nitrate reductase component NapD
Shewanella oneidensis MR-1 SO0849 -119 4.9 TACCTCTTGTGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_3147 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp W3-18-1 Sputw3181_0796 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp ANA-3 Shewana3_3429 -118 4.8 TACCTCTTGCGAGGTA
Shewanella sp MR-4 Shewmr4_0705 -118 4.9 TACCTCTTGTGAGGTA
Shewanella sp MR-7 Shewmr7_3317 -118 4.9 TACCTCTTGTGAGGTA
Shewanella baltica OS155 Sbal_3510 -119 4.9 TACCTCTTGTGAGGTA
Shewanella amazonensis SB2B Sama_2982 -105 4.8 TACCTCCTAGTGGGTA
Shewanella loihica PV-4 Shew_3205 -123 4.9 TACCTCTCAAGAGGTA
Shewanella pealeana ATCC 700345 Spea_0624 -118 4.9 TACCCCTTGTGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0716 -119 4.7 TACCCCTTGCGAGGTA
Shewanella piezotolerans WP3 swp_4456 -111 4.9 TACCCCTTGTGAGGTA
Shewanella sediminis HAW-EB3 Ssed_3956 -132 4.7 TACCTCTTGTTGGGTA
Shewanella woodyi ATCC 51908 Swoo_4109 -124 5 TACCCCTTACTAGGTA
Position: -161
Score: 5.1
Sequence: TACCTCTTTAGTAGTA
Locus tag: Swoo_4517
Swoo_4517 -161 5.1 TACCTCTTTAGTAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3141
Ortholog function: Nonaheme cytochrome c lipoprotein
Shewanella oneidensis MR-1 SO3140.1 -205 4.3 TACTTCCAAAGATATA
Shewanella oneidensis MR-1 SO3140.2 -205 4.3 TACTTCCAAAGATATA
Shewanella putrefaciens CN-32 Sputcn32_2507 -219 4.9 TACCTCTAAAGTAATA
Shewanella sp W3-18-1 Sputw3181_1501 -219 4.4 TATCTCTAAAGTAATA
Shewanella sp ANA-3 Shewana3_1409 -216 4.6 TACCTCCAAAGATATA
Shewanella sp MR-4 Shewmr4_1356 -215 4.6 TACCTCCAAAGATATA
Shewanella baltica OS155 Sbal_2843 -217 4.4 TACCTCCAAAGTATTA
Shewanella loihica PV-4 Shew_2580 -248 5 TACCTCCAAAGAGATA
Shewanella woodyi ATCC 51908 Swoo_4517 -161 5.1 TACCTCTTTAGTAGTA
Position: -107
Score: 4.8
Sequence: TAACTCTAAAGTGGTA
Locus tag: Swoo_4806
Swoo_4806 -107 4.8 TAACTCTAAAGTGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4520
Ortholog function: Coproporphyrinogen III oxidase, oxygen-independent
Shewanella oneidensis MR-1 SO4520 -95 4.4 TACTCCATTCGAGGTA
Shewanella sp ANA-3 Shewana3_3926 -95 4.4 TACTCCATACGAGGTA
Shewanella sp MR-4 Shewmr4_3730 -95 4.4 TACTCCATACGAGGTA
Shewanella sp MR-7 Shewmr7_3801 -95 4.4 TACTCCATACGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0076 -106 4.5 TATCTCTAAAGTGATA
Shewanella loihica PV-4 Shew_0073 -106 4.3 TATTCCTTAAGTGATA
Shewanella woodyi ATCC 51908 Swoo_4806 -107 4.8 TAACTCTAAAGTGGTA
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