Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Shewanella amazonensis SB2B

Reference regulog properties
Source regulog: Fnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Anaerobic metabolism
Effector: Oxygen
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella amazonensis SB2B
Orthologous TF(s) Sama_1799
Regulated genes 32
Built upon 541 sites [see more]
Predicted regulatory interactions in Shewanella amazonensis SB2B
Locus tag Position Score Sequence
Position: -118
Score: 4.9
Sequence: TTGATTTGCATCAA
Locus tag: Sama_0541
Sama_0541 -118 4.9 TTGATTTGCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0579
Ortholog function: Predicted serine/threonine protein kinase
Shewanella amazonensis SB2B Sama_0541 -118 4.9 TTGATTTGCATCAA
Shewanella baltica OS155 Sbal_0539 -154 4.5 TTGATGTAAGTCAA
Shewanella denitrificans OS217 Sden_0539 -87 4.5 TTGATGCAGGTCAA
Shewanella frigidimarina NCIMB 400 Sfri_3500 -226 4.6 TTGATATAGGTCAA
Shewanella halifaxensis HAW-EB4 Shal_0673 -123 4.8 TTGATGTGTATCAA
Shewanella loihica PV-4 Shew_3263 -124 4.6 TTGATATAGGTCAA
Shewanella oneidensis MR-1 SO0579 -145 4.9 TTGATATAAATCAA
Shewanella pealeana ATCC 700345 Spea_0586 -123 4.8 TTGATATGCATCAA
Shewanella piezotolerans WP3 swp_4517 -140 4.9 TTGATATACATCAA
Shewanella putrefaciens CN-32 Sputcn32_3298 -152 4.3 TTGATATAAGTCAA
Shewanella sediminis HAW-EB3 Ssed_4012 -185 4.6 TTGATATAGGTCAA
Shewanella sp ANA-3 Shewana3_0578 -152 4.9 TTGATATAAATCAA
Shewanella sp MR-4 Shewmr4_0579 -154 4.9 TTGATATAAATCAA
Shewanella sp MR-7 Shewmr7_3451 -154 4.9 TTGATATAAATCAA
Shewanella sp W3-18-1 Sputw3181_0643 -152 4.3 TTGATATAAGTCAA
Shewanella woodyi ATCC 51908 Swoo_4155 -226 4.8 TTGATGTAGGTCAA
Position: -135
Score: 4.6
Sequence: TTGATTCACATCAA
Position: -75
Score: 4.3
Sequence: TTGATCAAGATCAG
Locus tag: Sama_0549
Sama_0549 -135 4.6 TTGATTCACATCAA
-75 4.3 TTGATCAAGATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_0549
Ortholog function: Conserved hypothetical protein
Shewanella amazonensis SB2B Sama_0549 -135 4.6 TTGATTCACATCAA
-75 4.3 TTGATCAAGATCAG
Shewanella baltica OS155 Sbal_3565 -75 4.3 TTGATCAAGATCAG
Shewanella frigidimarina NCIMB 400 Sfri_0507 -75 4.3 TTGATCAAGATCAG
Shewanella halifaxensis HAW-EB4 Shal_0680 -75 4 TTGACTAAGATCAA
Shewanella loihica PV-4 Shew_3247 -87 4.4 TTGATCGAGATCAG
Shewanella pealeana ATCC 700345 Spea_0593 -138 4.2 ATGATCTACAACAT
-78 4.2 TTGACTGAGATCAA
Shewanella piezotolerans WP3 swp_4510 0 4.4 TTGACCAAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0777 -75 4.2 TTGATCAGGATCAG
Shewanella sediminis HAW-EB3 Ssed_4003 -244 4.2 TTTATCTAGATCAC
-87 4.4 TTGATCGAGATCAG
Shewanella sp ANA-3 Shewana3_0738 -75 4.2 TTGATCAGGATCAG
Shewanella sp W3-18-1 Sputw3181_3398 -75 4.2 TTGATCAGGATCAG
Shewanella woodyi ATCC 51908 Swoo_4146 -77 4.4 TTGATCGAGATCAG
Position: -131
Score: 4.2
Sequence: TTGCACAAGATCAA
Locus tag: Sama_0647
Sama_0647 -131 4.2 TTGCACAAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shewanella amazonensis SB2B Sama_0647 -131 4.2 TTGCACAAGATCAA
Shewanella baltica OS155 Sbal_0793 -117 4.9 TTGCGCTAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_0621 -159 4.5 TTGCGCCAGATCAA
Shewanella halifaxensis HAW-EB4 Shal_0885 -130 4.6 TTGCGGTAGATCAA
Shewanella loihica PV-4 Shew_0843 -132 4.5 TTGAGGCAGATCAT
Shewanella oneidensis MR-1 SO3981 -170 4.9 TTGCGCTAGATCAA
Shewanella pealeana ATCC 700345 Spea_0830 -128 4.6 TTGCGGTAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0684 -133 4.5 TTGCGCCAGATCAA
Shewanella sediminis HAW-EB3 Ssed_0930 -132 4.5 ATGCGGTAGATCAA
Shewanella sp ANA-3 Shewana3_0657 -134 4.9 TTGCGCTAGATCAA
Shewanella sp MR-4 Shewmr4_0658 -135 4.9 TTGCGCTAGATCAA
Shewanella sp MR-7 Shewmr7_3364 -135 4.9 TTGCGCTAGATCAA
Shewanella sp W3-18-1 Sputw3181_3487 -133 4.5 TTGCGCCAGATCAA
Shewanella woodyi ATCC 51908 Swoo_0971 -131 4.6 TTGCGGTAGATCAA
Position: -128
Score: 4.3
Sequence: TTGATCTTGTGCAA
Locus tag: Sama_0648
Sama_0648 -128 4.3 TTGATCTTGTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewanella amazonensis SB2B Sama_0648 -128 4.3 TTGATCTTGTGCAA
Shewanella baltica OS155 Sbal_0794 -122 5 TTGATCTAGCGCAA
Shewanella frigidimarina NCIMB 400 Sfri_0622 -138 4.9 TTGATCTGGCGCAA
Shewanella halifaxensis HAW-EB4 Shal_0886 -125 4.6 TTGATCTACCGCAA
Shewanella loihica PV-4 Shew_0844 -129 4.8 ATGATCTGCCTCAA
Shewanella oneidensis MR-1 SO3980 -122 5 TTGATCTAGCGCAA
Shewanella pealeana ATCC 700345 Spea_0831 -128 4.6 TTGATCTACCGCAA
Shewanella piezotolerans WP3 swp_3958 -123 4.6 TTGATCTAACGCAA
Shewanella putrefaciens CN-32 Sputcn32_0685 -122 4.9 TTGATCTGGCGCAA
Shewanella sediminis HAW-EB3 Ssed_0931 -127 4.4 TTGATCTACCGCAT
Shewanella sp ANA-3 Shewana3_0658 -104 5 TTGATCTAGCGCAA
Shewanella sp MR-4 Shewmr4_0659 -104 5 TTGATCTAGCGCAA
Shewanella sp MR-7 Shewmr7_3363 -104 5 TTGATCTAGCGCAA
Shewanella sp W3-18-1 Sputw3181_3486 -122 4.9 TTGATCTGGCGCAA
Shewanella woodyi ATCC 51908 Swoo_0972 -127 4.6 TTGATCTACCGCAA
Position: -98
Score: 4.3
Sequence: TTGATTCAGATCAC
Locus tag: Sama_0861
Sama_0861 -98 4.3 TTGATTCAGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaB
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Shewanella amazonensis SB2B Sama_0861 -98 4.3 TTGATTCAGATCAC
Shewanella baltica OS155 Sbal_1182 -97 4.6 TTGATCCAGATCAC
Shewanella denitrificans OS217 Sden_2784 -153 5 TTGATCTAGATCAC
Shewanella frigidimarina NCIMB 400 Sfri_2947 -154 4.6 TTGATCTAAATCAC
Shewanella halifaxensis HAW-EB4 Shal_1065 -95 4 TTGACTTAGATCAC
Shewanella loihica PV-4 Shew_1036 -158 4 TTGACTTAGATCAC
Shewanella oneidensis MR-1 SO1329 -158 4.6 TTGATCCAGATCAC
Shewanella pealeana ATCC 700345 Spea_1019 -96 4 TTGACTTAGATCAC
Shewanella piezotolerans WP3 swp_3798 -94 4 TTGACTTAGATCAC
Shewanella putrefaciens CN-32 Sputcn32_1140 -97 4.6 TTGATCCAGATCAC
Shewanella sp ANA-3 Shewana3_3045 -158 4.6 TTGATCCAGATCAC
Shewanella sp MR-4 Shewmr4_2867 -158 4.6 TTGATCCAGATCAC
Shewanella sp MR-7 Shewmr7_2949 -158 4.6 TTGATCCAGATCAC
Shewanella sp W3-18-1 Sputw3181_3024 -97 4.6 TTGATCCAGATCAC
Position: -109
Score: 4.5
Sequence: ATGATCTGCTTCAA
Locus tag: Sama_0895
Sama_0895 -109 4.5 ATGATCTGCTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella amazonensis SB2B Sama_0895 -109 4.5 ATGATCTGCTTCAA
Shewanella frigidimarina NCIMB 400 Sfri_3609 -121 4.5 GTGATGTGGCTCAT
Shewanella loihica PV-4 Shew_1069 -121 4.1 TTGATCCGCTTCAT
Shewanella sediminis HAW-EB3 Ssed_1165 -120 4.4 TTGATCTACTTCAT
Shewanella woodyi ATCC 51908 Swoo_1260 -121 4.7 TTGATCTGTCTCAA
Position: -114
Score: 4.6
Sequence: ATGATCCATATCAA
Locus tag: Sama_1275
Sama_1275 -114 4.6 ATGATCCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Shewanella amazonensis SB2B Sama_1275 -114 4.6 ATGATCCATATCAA
Shewanella baltica OS155 Sbal_1665 -122 5.2 ATGATCTGGATCAT
Shewanella denitrificans OS217 Sden_1419 -166 5.5 ATGATCTAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_2443 -106 5.4 ATGATCTGGATCAA
Shewanella halifaxensis HAW-EB4 Shal_2692 -123 5.4 ATGATCTGGATCAA
Shewanella loihica PV-4 Shew_2449 -122 5.4 ATGATCTGGATCAA
Shewanella oneidensis MR-1 SO2834 -269 4 TTGATTTTAAGCAT
-121 5.2 ATGATCTGGATCAT
Shewanella pealeana ATCC 700345 Spea_2619 -123 5.4 ATGATCTGGATCAA
Shewanella piezotolerans WP3 swp_3165 -122 5.4 ATGATCTGGATCAA
-62 3.8 TTGATTTAAAGTAA
Shewanella putrefaciens CN-32 Sputcn32_1540 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella sediminis HAW-EB3 Ssed_1600 -122 5 ATGATCGAGATCAA
Shewanella sp ANA-3 Shewana3_2603 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-4 Shewmr4_2441 -121 5.2 ATGATCTGGATCAT
Shewanella sp MR-7 Shewmr7_2511 -121 5.2 ATGATCTGGATCAT
Shewanella sp W3-18-1 Sputw3181_2559 -203 3.9 ATGACTTAGGTCAA
-121 5.2 ATGATCTGGATCAT
Shewanella woodyi ATCC 51908 Swoo_3049 -122 4.8 ATGATCAGGATCAA
Position: -105
Score: 5.2
Sequence: TTGATTTGGATCAA
Locus tag: Sama_1371
Sama_1371 -105 5.2 TTGATTTGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella amazonensis SB2B Sama_1371 -105 5.2 TTGATTTGGATCAA
Shewanella baltica OS155 Sbal_1490 -103 5.2 TTGATTTGGATCAA
Shewanella denitrificans OS217 Sden_2589 -153 4.5 GTGAATTAGATCAA
-103 5.3 TTGATCCAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -166 4.6 GTGATCCAAATCAA
-105 5.3 TTGATCTAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_2887 -107 4.4 TTGATTCAGGTCAA
Shewanella oneidensis MR-1 SO1673 -293 4.3 TTGATGTAAATGAA
-106 5.2 TTGATTTGGATCAA
Shewanella pealeana ATCC 700345 Spea_2787 -155 4.3 GTGATCTAGATCCT
-104 5.3 TTGATTTAGATCAA
Shewanella piezotolerans WP3 swp_3395 -107 5.6 TTGATCTAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_1392 -103 5.3 TTGATTTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_1469 -154 3.8 GTGAGCTTGGTCAT
-104 5.6 TTGATCTGGATCAA
Shewanella sp ANA-3 Shewana3_2775 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-4 Shewmr4_2601 -103 5.2 TTGATTTGGATCAA
Shewanella sp MR-7 Shewmr7_2668 -103 5.2 TTGATTTGGATCAA
Shewanella sp W3-18-1 Sputw3181_2709 -103 5.3 TTGATTTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3207 -154 4.1 GTGAGTTCGATCAA
-104 5.2 TTGATTTGGATCAA
Position: -165
Score: 4
Sequence: ATGATATAGCTCAG
Locus tag: Sama_1427
Sama_1427 -165 4 ATGATATAGCTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Shewanella amazonensis SB2B Sama_1427 -165 4 ATGATATAGCTCAG
Shewanella halifaxensis HAW-EB4 Shal_2489 -183 4.4 TTGATATAGCTCTA
Shewanella pealeana ATCC 700345 Spea_1788 -186 4.4 TTGATATAGCTCTA
Shewanella piezotolerans WP3 swp_2949 -184 4.4 TTGATATAGCTCTA
Position: -133
Score: 5.4
Sequence: ATGATCTGGATCAA
Locus tag: Sama_1620
Sama_1620 -133 5.4 ATGATCTGGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napE2
Ortholog function: Periplasmic nitrate reductase component NapE
Shewanella amazonensis SB2B Sama_1620 -133 5.4 ATGATCTGGATCAA
Shewanella baltica OS155 Sbal_1908 -171 5.4 ATGATCTGGATCAA
Shewanella denitrificans OS217 Sden_1495 -69 5.1 CTGATCTAGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_2555 -146 5.3 ATGATCTAGATCAT
Shewanella loihica PV-4 Shew_1768 -181 5.1 ATGATCCAGATCAA
Shewanella pealeana ATCC 700345 Spea_2429 -191 5.4 ATGATCTGGATCAA
Shewanella putrefaciens CN-32 Sputcn32_1901 -172 5.4 ATGATCTGGATCAA
Shewanella sp ANA-3 Shewana3_1898 -164 5.4 ATGATCTGGATCAA
Shewanella sp MR-4 Shewmr4_1840 -164 5.4 ATGATCTGGATCAA
Shewanella sp MR-7 Shewmr7_2137 -164 5.4 ATGATCTGGATCAA
Shewanella sp W3-18-1 Sputw3181_2107 -172 5.4 ATGATCTGGATCAA
Position: -107
Score: 4.2
Sequence: TTGACGTGTATCAA
Locus tag: Sama_1679
Sama_1679 -107 4.2 TTGACGTGTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyaA
Ortholog function: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1)
Shewanella amazonensis SB2B Sama_1679 -107 4.2 TTGACGTGTATCAA
Shewanella baltica OS155 Sbal_1889 -163 3.8 TAGATCTACGTCAT
-103 4.9 TTGATATACATCAA
Shewanella frigidimarina NCIMB 400 Sfri_2103 -164 4.4 TTGATCAACATCAT
-103 4.7 TTGATTTATATCAA
Shewanella halifaxensis HAW-EB4 Shal_2261 -208 3.8 GTGATCTCCATCAC
-148 5.2 ATGATCTAGCTCAA
-87 3.9 TTGACGCATATCAA
Shewanella loihica PV-4 Shew_1765 -220 4.7 TTGAAGCGGATCAA
-160 4.8 TTGATCCAGCTCAT
-99 4.2 TTGACATACATCAA
Shewanella oneidensis MR-1 SO2099 -101 4.8 TTGATATGCATCAA
Shewanella pealeana ATCC 700345 Spea_2033 -147 5.2 ATGATCTAGCTCAA
-86 3.8 TTGACTCATATCAA
Shewanella putrefaciens CN-32 Sputcn32_2088 -103 4.9 TTGATATACATCAA
Shewanella sediminis HAW-EB3 Ssed_1908 -158 4.6 ATGATCTAGTTCAT
-98 4.5 TTGATGTGAGTCAA
Shewanella sp ANA-3 Shewana3_1880 -162 4.3 TAGATCTGCATCAT
-102 4.8 TTGATATGCATCAA
Shewanella sp MR-4 Shewmr4_1822 -162 4.3 TAGATCTGCATCAT
-102 4.8 TTGATATGCATCAA
Shewanella sp MR-7 Shewmr7_2155 -162 4.3 TAGATCTGCATCAT
-102 4.8 TTGATATGCATCAA
Shewanella sp W3-18-1 Sputw3181_1924 -103 4.9 TTGATATACATCAA
Position: -218
Score: 5.3
Sequence: TTGATCCAGATCAA
Locus tag: Sama_1791
Sama_1791 -218 5.3 TTGATCCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1)
Shewanella amazonensis SB2B Sama_1791 -218 5.3 TTGATCCAGATCAA
Shewanella baltica OS155 Sbal_2201 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella baltica OS155 Sbal_4487 -212 5.6 TTGATCTAGATCAA
-169 4.5 TTGATATTGCTCAA
Shewanella denitrificans OS217 Sden_1851 -220 5.3 TTGATCCAGATCAA
-178 5.1 TTGATGTAGCTCAA
Shewanella frigidimarina NCIMB 400 Sfri_2010 -224 5.6 TTGATCTAGATCAA
-182 4.3 TTGACTTAGCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2197 -217 5.6 TTGATCTAGATCAA
-174 4.9 TTGATATAGCTCAA
Shewanella loihica PV-4 Shew_1985 -217 5.6 TTGATCTGGATCAA
-174 4.5 TTGATATTGCTCAA
Shewanella oneidensis MR-1 SO2364 -212 5.6 TTGATCTAGATCAA
-169 4.2 TTGACATGGCTCAA
-106 4.3 TTGACATAGCTCAA
Shewanella pealeana ATCC 700345 Spea_2214 -215 5.6 TTGATCTAGATCAA
-172 4.9 TTGATATAGCTCAA
Shewanella piezotolerans WP3 swp_2572 -217 5.6 TTGATCTAGATCAA
-174 4.3 TTGACATAGCTCAA
Shewanella putrefaciens CN-32 Sputcn32_1959 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella sediminis HAW-EB3 Ssed_2211 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Shewanella sp ANA-3 Shewana3_2107 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-4 Shewmr4_2006 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp MR-7 Shewmr7_1969 -210 5.6 TTGATCTAGATCAA
-167 4.2 TTGACATGGCTCAA
Shewanella sp W3-18-1 Sputw3181_2046 -210 5.6 TTGATCTAGATCAA
-167 3.9 TTGACATTGCTCAA
Shewanella woodyi ATCC 51908 Swoo_2425 -216 5.6 TTGATCTAGATCAA
-173 4.3 TTGACATAGCTCAA
Position: -74
Score: 4.6
Sequence: TTGATCTAAAACAA
Locus tag: Sama_1800
Sama_1800 -74 4.6 TTGATCTAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspE
Ortholog function: Universal stress protein E
Shewanella amazonensis SB2B Sama_1800 -74 4.6 TTGATCTAAAACAA
Shewanella baltica OS155 Sbal_2210 -72 4.9 TTGATCTAGAACAA
Shewanella baltica OS155 Sbal_4496 -72 4.9 TTGATCTAGAACAA
Shewanella denitrificans OS217 Sden_1842 -69 4.2 TTGATATAGCTCAC
Shewanella frigidimarina NCIMB 400 Sfri_2019 -87 4.6 ATGATCTATCTCAA
Shewanella halifaxensis HAW-EB4 Shal_2206 -73 4.6 TTGATCTAAAACAA
Shewanella loihica PV-4 Shew_1994 -72 4.6 TTGATCTAAAACAA
Shewanella oneidensis MR-1 SO2355 -72 4.9 TTGATCTAGAACAA
Shewanella pealeana ATCC 700345 Spea_2223 -74 4.6 TTGATCTAAAACAA
Shewanella piezotolerans WP3 swp_2581 -71 4.6 TTGATCTAAAACAA
Shewanella putrefaciens CN-32 Sputcn32_1950 -72 4.9 TTGATCTAGAACAA
Shewanella sediminis HAW-EB3 Ssed_2220 -71 4.6 TTGATCTGAAACAA
Shewanella sp ANA-3 Shewana3_2116 -72 4.9 TTGATCTAGAACAA
Shewanella sp MR-4 Shewmr4_2015 -72 4.9 TTGATCTAGAACAA
Shewanella sp MR-7 Shewmr7_1960 -72 4.9 TTGATCTAGAACAA
Shewanella sp W3-18-1 Sputw3181_2055 -72 4.9 TTGATCTAGAACAA
Shewanella woodyi ATCC 51908 Swoo_2416 -70 4.9 TTGATCTAAAGCAA
Position: -96
Score: 4.7
Sequence: TTGAGATAGATCAT
Locus tag: Sama_1814
Sama_1814 -96 4.7 TTGAGATAGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykA
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Shewanella amazonensis SB2B Sama_1814 -96 4.7 TTGAGATAGATCAT
Shewanella halifaxensis HAW-EB4 Shal_1947 -95 4.7 TTGAGTTAGATCAT
Shewanella loihica PV-4 Shew_2050 -94 4.7 TTGAGATAGATCAT
Shewanella pealeana ATCC 700345 Spea_2337 -95 4.7 TTGAGTTAGATCAT
Shewanella piezotolerans WP3 swp_2388 -95 4.7 TTGAGATAGATCAT
Shewanella sediminis HAW-EB3 Ssed_2068 -95 4.7 TTGCGCTAGATCAT
Shewanella woodyi ATCC 51908 Swoo_2541 -95 4.7 TTGCGCTAGATCAT
Position: -169
Score: 4.5
Sequence: GTGATGTGAATCAT
Locus tag: Sama_1919
Sama_1919 -169 4.5 GTGATGTGAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: Glutaredoxin-related protein
Shewanella amazonensis SB2B Sama_1919 -169 4.5 GTGATGTGAATCAT
Shewanella baltica OS155 Sbal_1783 -152 4.5 GTGATGTGAATCAT
Shewanella denitrificans OS217 Sden_1640 -133 4.5 GTGATGTGCATCAT
Shewanella frigidimarina NCIMB 400 Sfri_1748 -151 4.5 GTGATGTGAATCAT
Shewanella halifaxensis HAW-EB4 Shal_2335 -150 3.9 GTGAAGTGTATCAT
Shewanella loihica PV-4 Shew_1835 -160 4.5 GTGATGTGAATCAT
Shewanella oneidensis MR-1 SO2880 -153 4.5 GTGATGTGAATCAT
Shewanella pealeana ATCC 700345 Spea_1964 -150 3.9 GTGAAGTGTATCAT
Shewanella piezotolerans WP3 swp_2753 -149 3.9 GTGAAGTGTATCAT
Shewanella putrefaciens CN-32 Sputcn32_1688 -152 4.5 GTGATGTGAATCAT
Shewanella sp ANA-3 Shewana3_1640 -153 4.5 GTGATGTGAATCAT
Shewanella sp MR-4 Shewmr4_1573 -153 4.5 GTGATGTGAATCAT
Shewanella sp MR-7 Shewmr7_1648 -153 4.5 GTGATGTGAATCAT
Shewanella sp W3-18-1 Sputw3181_2337 -152 4.5 GTGATGTGAATCAT
Position: -334
Score: 4.3
Sequence: TTGATTTACGTCAA
Locus tag: Sama_2349
Sama_2349 -334 4.3 TTGATTTACGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-)
Shewanella amazonensis SB2B Sama_2349 -334 4.3 TTGATTTACGTCAA
Shewanella baltica OS155 Sbal_2979 -342 4.9 TTGATTTGCATCAA
Shewanella denitrificans OS217 Sden_1274 -153 5.3 TTGATCTAAATCAA
Shewanella frigidimarina NCIMB 400 Sfri_1142 -338 4.2 ATGATTGTGATCAA
Shewanella halifaxensis HAW-EB4 Shal_1381 -336 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella loihica PV-4 Shew_1302 -341 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella oneidensis MR-1 SO3286 -338 4.9 TTGATTTGAATCAA
Shewanella pealeana ATCC 700345 Spea_1318 -337 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella piezotolerans WP3 swp_1469 -332 4.9 TTGATTTGAATCAA
-51 4.4 TTGATGGGGATCTA
Shewanella putrefaciens CN-32 Sputcn32_2641 -339 4.9 TTGATTTGAATCAA
Shewanella sediminis HAW-EB3 Ssed_3118 -336 4.9 TTGATTTGAATCAA
Shewanella sp ANA-3 Shewana3_1241 -338 4.9 TTGATTTGAATCAA
Shewanella sp MR-4 Shewmr4_1239 -338 4.9 TTGATTTGAATCAA
Shewanella sp MR-7 Shewmr7_1310 -338 4.9 TTGATTTGAATCAA
Shewanella sp W3-18-1 Sputw3181_1366 -339 4.9 TTGATTTGAATCAA
Shewanella woodyi ATCC 51908 Swoo_1565 -334 4.9 TTGATTTGAATCAA
-51 4.2 ATGATGGGGATCTA
Position: -132
Score: 4.9
Sequence: ATGATCTGTATCAA
Locus tag: Sama_2439
Sama_2439 -132 4.9 ATGATCTGTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lldP
Ortholog function: L-lactate permease
Shewanella amazonensis SB2B Sama_2439 -132 4.9 ATGATCTGTATCAA
Shewanella baltica OS155 Sbal_1354 -177 5.3 ATGATCTAGATCAT
Shewanella loihica PV-4 Shew_3135 -162 5.3 ATGATCTAGATCAT
Shewanella piezotolerans WP3 swp_1813 -376 4.7 TTGATCCACATCAT
Shewanella putrefaciens CN-32 Sputcn32_1272 -175 5.3 ATGATCTAGATCAT
Shewanella sediminis HAW-EB3 Ssed_0907 -375 5 TTGATCTGAATCAT
Shewanella sp ANA-3 Shewana3_2904 -177 5.3 ATGATCTAGATCAT
Shewanella sp W3-18-1 Sputw3181_2834 -175 5.3 ATGATCTAGATCAT
Position: -41
Score: 5.4
Sequence: TTGATGTAGATCAA
Locus tag: Sama_2530
Sama_2530 -41 5.4 TTGATGTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr2
Ortholog function: Bacterioferritin
Shewanella amazonensis SB2B Sama_2530 -41 5.4 TTGATGTAGATCAA
Shewanella baltica OS155 Sbal_0932 -44 5.3 TTGATTTAGATCAA
Shewanella denitrificans OS217 Sden_0990 -36 4.6 TTGATTTGGATCAC
Shewanella frigidimarina NCIMB 400 Sfri_0957 -37 4.5 TTGATCGAGATCAC
Shewanella halifaxensis HAW-EB4 Shal_3179 -33 5.2 TTGATATAGATCAA
Shewanella loihica PV-4 Shew_2873 -33 5.3 TTGATTTAGATCAA
Shewanella oneidensis MR-1 SO1111 -43 5.3 TTGATTTAGATCAA
Shewanella pealeana ATCC 700345 Spea_3095 -33 5.2 TTGATATAGATCAA
Shewanella piezotolerans WP3 swp_1175 -35 5.2 TTGATATAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0948 -44 5.3 TTGATTTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_2230 -31 5.2 TTGATATAGATCAA
Shewanella sp ANA-3 Shewana3_0946 -43 5.3 TTGATTTAGATCAA
Shewanella sp MR-4 Shewmr4_0944 -42 5.3 TTGATTTAGATCAA
Shewanella sp MR-7 Shewmr7_0982 -43 5.3 TTGATTTAGATCAA
Shewanella sp W3-18-1 Sputw3181_3228 -44 5.3 TTGATTTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_3608 -85 5.4 TTGATGTAGATCAA
Position: -83
Score: 4.1
Sequence: TTGATGAGGATCAC
Locus tag: Sama_2599
Sama_2599 -83 4.1 TTGATGAGGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_2599
Ortholog function: Predicted lipoprotein
Shewanella amazonensis SB2B Sama_2599 -83 4.1 TTGATGAGGATCAC
Shewanella frigidimarina NCIMB 400 Sfri_3610 -73 5 TTGATGTTGATCAA
Shewanella sediminis HAW-EB3 Ssed_2168 -72 4.6 TTGACATAGATCAA
Shewanella sp MR-4 Shewmr4_1948 -82 4.3 TTGATTTACATCAC
Shewanella sp MR-7 Shewmr7_2028 -82 4.3 TTGATTTACATCAC
Position: -133
Score: 4.7
Sequence: TTGATCCAGCGCAA
Locus tag: Sama_2679
Sama_2679 -133 4.7 TTGATCCAGCGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydD
Ortholog function: Transport ATP-binding protein CydD
Shewanella amazonensis SB2B Sama_2679 -133 4.7 TTGATCCAGCGCAA
Shewanella denitrificans OS217 Sden_0860 -222 4.4 CTGAGCTAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_3589 -229 5.3 TTGATCTAGCTCAA
Shewanella loihica PV-4 Shew_0613 -125 5.3 TTGATCTAGCTCAA
Shewanella pealeana ATCC 700345 Spea_3494 -181 5.3 TTGATCTAGCTCAA
Shewanella sediminis HAW-EB3 Ssed_3849 -135 5.3 TTGATCTAGCTCAA
Shewanella woodyi ATCC 51908 Swoo_0710 -145 5.3 TTGATCTAGCTCAA
Position: -256
Score: 4.4
Sequence: GTGATCTGGCGCAT
Locus tag: Sama_2981
Sama_2981 -256 4.4 GTGATCTGGCGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA1
Ortholog function: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Shewanella amazonensis SB2B Sama_2981 -256 4.4 GTGATCTGGCGCAT
Shewanella sp MR-4 Shewmr4_0748 -145 4.5 TTGATGTGAATCTA
Shewanella sp MR-7 Shewmr7_3272 -145 4.3 TTGATGTGAATCCA
Position: -134
Score: 3.8
Sequence: GTGATGCAGATCCT
Locus tag: Sama_3221
Sama_3221 -134 3.8 GTGATGCAGATCCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: frdC1
Ortholog function: Fumarate reductase, cytochrome b subunit
Shewanella baltica OS155 Sbal_3936 -101 4.6 TTGATCTGGCTCAC
Shewanella halifaxensis HAW-EB4 Shal_3898 -134 3.9 GTGATCTACGTCTA
Shewanella loihica PV-4 Shew_0333 -122 3.9 GTGATCGACGTCAA
Shewanella oneidensis MR-1 SO0397 -105 4.3 TTGATCTAACTCAG
Shewanella pealeana ATCC 700345 Spea_0393 -134 4.4 GTGATCTTGATCTA
Shewanella piezotolerans WP3 swp_0429 -134 4.1 GTGATCTTGCTCTA
Shewanella putrefaciens CN-32 Sputcn32_3440 -108 3.8 GTGAGGTAGCTCAC
Shewanella sediminis HAW-EB3 Ssed_4115 -100 4.3 TTGATCTGCCTCAC
Shewanella sp ANA-3 Shewana3_0402 -103 4.3 TTGATCTAACTCAG
Shewanella sp MR-4 Shewmr4_0403 -103 4.3 TTGATCTAACTCAG
Shewanella sp MR-7 Shewmr7_3622 -102 4.3 TTGATCTAACTCAG
Shewanella sp W3-18-1 Sputw3181_0499 -108 3.8 GTGAGGTAGCTCAC
Shewanella woodyi ATCC 51908 Swoo_0508 -134 4.4 GTGATGTGGTTCAA
Position: -314
Score: 4.9
Sequence: GTGATCTTGATCAA
Locus tag: Sama_3483
Sama_3483 -314 4.9 GTGATCTTGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: coxB
Ortholog function: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1)
Shewanella amazonensis SB2B Sama_3483 -314 4.9 GTGATCTTGATCAA
Shewanella baltica OS155 Sbal_0154 -313 4.9 GTGATCTTGATCAA
Shewanella denitrificans OS217 Sden_3517 -312 4.9 GTGATCTTGATCAA
Shewanella frigidimarina NCIMB 400 Sfri_0258 -317 4.9 GTGATCTTGATCAA
-209 4.8 ATGATCCAAATCAA
Shewanella halifaxensis HAW-EB4 Shal_0258 -372 4.9 GTGATCTTGATCAA
Shewanella loihica PV-4 Shew_0125 -317 4.9 GTGATCTTGATCAA
Shewanella oneidensis MR-1 SO4606 -313 4.9 GTGATCTTGATCAA
Shewanella pealeana ATCC 700345 Spea_3999 -349 4.9 GTGATCTTGATCAA
-246 4.2 TAGATCCTGATCAA
Shewanella piezotolerans WP3 swp_4823 -366 4.9 GTGATCTTGATCAA
Shewanella putrefaciens CN-32 Sputcn32_3782 -305 4.9 GTGATCTTGATCAA
Shewanella sediminis HAW-EB3 Ssed_0198 -339 5.2 TTGATCTTGATCAA
Shewanella sp ANA-3 Shewana3_3991 -314 4.9 GTGATCTTGATCAA
Shewanella sp MR-4 Shewmr4_3791 -314 4.9 GTGATCTTGATCAA
Shewanella sp MR-7 Shewmr7_3864 -313 4.9 GTGATCTTGATCAA
Shewanella sp W3-18-1 Sputw3181_0133 -305 4.9 GTGATCTTGATCAA
Shewanella woodyi ATCC 51908 Swoo_0178 -337 4.9 GTGATCTTGATCAA
Position: -184
Score: 4.6
Sequence: TTGGTCTGGATCAT
Locus tag: Sama_3523
Sama_3523 -184 4.6 TTGGTCTGGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfD
Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Shewanella amazonensis SB2B Sama_3523 -184 4.6 TTGGTCTGGATCAT
Shewanella loihica PV-4 Shew_0086 -175 3.9 TTGTTTAAGATCAA
Shewanella oneidensis MR-1 SO4453 -198 4.3 TTGATCAGGTTCAA
Shewanella putrefaciens CN-32 Sputcn32_0388 -198 4.2 TTGGCCTAGATCAA
Shewanella sediminis HAW-EB3 Ssed_4403 -177 4.6 TTGCTCAAGATCAA
Shewanella sp ANA-3 Shewana3_0273 -202 4.3 TTGATCCGCTTCAA
Shewanella sp MR-4 Shewmr4_0272 -202 4.3 TTGATCCGCTTCAA
Shewanella sp MR-7 Shewmr7_3749 -202 4.3 TTGATCCGCTTCAA
Shewanella sp W3-18-1 Sputw3181_0242 -198 4.2 TTGGCCTAGATCAA
Shewanella woodyi ATCC 51908 Swoo_4794 -162 4.5 TTGCTCAGGATCAA
Position: -145
Score: 4.6
Sequence: ATGATCCAGACCAA
Locus tag: Sama_3524
Sama_3524 -145 4.6 ATGATCCAGACCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Shewanella amazonensis SB2B Sama_3524 -145 4.6 ATGATCCAGACCAA
Shewanella baltica OS155 Sbal_0284 -152 3.9 GTGATCTAGGTTAA
Shewanella loihica PV-4 Shew_0087 -154 4.2 TTGATCTTAAACAA
Shewanella oneidensis MR-1 SO4452 -185 4.5 TTGAACCTGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0389 -152 4.5 TTGATCTAGGCCAA
Shewanella sediminis HAW-EB3 Ssed_4402 -186 4.9 TTGATCTTGAGCAA
Shewanella sp ANA-3 Shewana3_0274 -152 4.7 TTGAAGCGGATCAA
Shewanella sp MR-4 Shewmr4_0273 -152 4.7 TTGAAGCGGATCAA
Shewanella sp MR-7 Shewmr7_3748 -152 4.7 TTGAAGCGGATCAA
Shewanella sp W3-18-1 Sputw3181_0243 -152 4.5 TTGATCTAGGCCAA
Shewanella woodyi ATCC 51908 Swoo_4793 -187 4.6 TTGATCCTGAGCAA
Position: -148
Score: 4
Sequence: CTGCGCCAGATCAA
Locus tag: Sama_3610
Sama_3610 -148 4 CTGCGCCAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdhX2
Ortholog function: Formate dehydrogenase, subunit or accessory protein
Shewanella amazonensis SB2B Sama_3610 -148 4 CTGCGCCAGATCAA
Position: -109
Score: 4.2
Sequence: ATGATCCACTTCAA
Locus tag: Sama_3618
Sama_3618 -109 4.2 ATGATCCACTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4504
Ortholog function: Conserved hypothetical protein
Shewanella amazonensis SB2B Sama_3618 -109 4.2 ATGATCCACTTCAA
Shewanella baltica OS155 Sbal_4131 -226 4.2 GTGATCTGCCGCAA
-132 4.8 ATGATCTAGTTCAA
Shewanella frigidimarina NCIMB 400 Sfri_0052 -225 4.6 GTGATCTGGCGCAA
-121 3.9 GGGATCTAGTTCAA
Shewanella halifaxensis HAW-EB4 Shal_0100 -120 5 TTGATCTAGTTCAA
Shewanella loihica PV-4 Shew_0054 -123 4.5 ATGATCCAGTTCAA
Shewanella oneidensis MR-1 SO4504 -126 4.2 ATGATCCACTTCAA
Shewanella pealeana ATCC 700345 Spea_4142 -119 5 TTGATCTAGTTCAA
Shewanella piezotolerans WP3 swp_5034 -118 5 TTGATCTAGTTCAA
Shewanella putrefaciens CN-32 Sputcn32_0342 -230 4.1 GTGATCTATCGCAA
-136 4.5 ATGATCTACTTCAA
Shewanella sediminis HAW-EB3 Ssed_4426 -119 4.8 ATGATCCAGCTCAA
Shewanella sp ANA-3 Shewana3_3911 -127 4.5 ATGATCCACCTCAA
Shewanella sp MR-4 Shewmr4_3715 -127 4.5 ATGATCCACCTCAA
Shewanella sp MR-7 Shewmr7_3786 -127 4.5 ATGATCCACCTCAA
Shewanella sp W3-18-1 Sputw3181_3866 -136 4.5 ATGATCTACTTCAA
Shewanella woodyi ATCC 51908 Swoo_4818 -144 5.2 ATGATCTAGCTCAA
Position: -182
Score: 4.8
Sequence: TTGAAGTGGATCAT
Locus tag: Sama_3619
Sama_3619 -182 4.8 TTGAAGTGGATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdhD
Ortholog function: Formate dehydrogenase chain D (EC 1.2.1.2)
Shewanella amazonensis SB2B Sama_3619 -182 4.8 TTGAAGTGGATCAT
Shewanella baltica OS155 Sbal_4130 -183 5 TTGAACTAGATCAT
Shewanella halifaxensis HAW-EB4 Shal_0099 -177 5.2 TTGAACTAGATCAA
Shewanella loihica PV-4 Shew_0053 -186 5 TTGAACTGGATCAT
Shewanella oneidensis MR-1 SO4503 -330 4.8 TTGAAGTGGATCAT
Shewanella pealeana ATCC 700345 Spea_4143 -179 5.2 TTGAACTAGATCAA
Shewanella putrefaciens CN-32 Sputcn32_0343 -183 4.8 TTGAAGTAGATCAT
Shewanella sediminis HAW-EB3 Ssed_4427 -149 5 TTGAGCTGGATCAT
Shewanella sp ANA-3 Shewana3_3910 -183 4.8 TTGAGGTGGATCAT
Shewanella sp MR-4 Shewmr4_3714 -183 4.8 TTGAGGTGGATCAT
Shewanella sp MR-7 Shewmr7_3785 -183 4.8 TTGAGGTGGATCAT
Shewanella sp W3-18-1 Sputw3181_3865 -127 4.8 TTGAAGTAGATCAT
Shewanella woodyi ATCC 51908 Swoo_4819 -159 5.1 TTGAGCTAGATCAT
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