Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NrdR regulog to Shewanella amazonensis SB2B

Reference regulog properties
Source regulog: NrdR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella amazonensis SB2B
Orthologous TF(s) Sama_1015
Regulated genes 2
Built upon 64 sites [see more]
Predicted regulatory interactions in Shewanella amazonensis SB2B
Locus tag Position Score Sequence
Position: -72
Score: 4.6
Sequence: ACACTACATTTTGTAT
Position: -41
Score: 4.1
Sequence: GCTCAACATATAGTGA
Locus tag: Sama_1275
Sama_1275 -72 4.6 ACACTACATTTTGTAT
-41 4.1 GCTCAACATATAGTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Shewanella oneidensis MR-1 SO2834 -79 4.3 TGCCTACATATTGTGT
-48 5.2 TCACTATATGTAGTGT
Shewanella putrefaciens CN-32 Sputcn32_1540 -79 4.4 ACGCTATATATTGTGC
-48 5.2 TCACTATATGTAGTGT
Shewanella sp W3-18-1 Sputw3181_2559 -79 4.4 ACGCTATATATTGTGC
-48 5.2 TCACTATATGTAGTGT
Shewanella sp ANA-3 Shewana3_2603 -79 4.3 TGCCTAGATATTGTGT
-48 5 GCACTATATGTAGTGT
Shewanella sp MR-4 Shewmr4_2441 -79 4.4 TGCCTAGATATAGTGT
-48 5.5 ACACTATATGTAGTGT
Shewanella sp MR-7 Shewmr7_2511 -79 4.4 TGCCTACATATAGTGT
-48 5.5 ACACTATATGTAGTGT
Shewanella baltica OS155 Sbal_1665 -80 4.4 GCTCTACATATTGTGT
-49 5 TCACTAGATGTAGTGT
Shewanella denitrificans OS217 Sden_1419 -124 4.1 GCACAGCATATTGTGT
-93 3.6 AgtCTATATgTAGatT
Shewanella frigidimarina NCIMB 400 Sfri_2443 -64 4.7 ACACTCTATCTTGTGT
-33 4 GCGCTATATATAGTGC
Shewanella amazonensis SB2B Sama_1275 -72 4.6 ACACTACATTTTGTAT
-41 4.1 GCTCAACATATAGTGA
Shewanella loihica PV-4 Shew_2449 -80 4.3 GCGCTACATATTGTGT
-49 5.2 ACACTATATATGGTGT
Shewanella pealeana ATCC 700345 Spea_2619 -81 3.6 gCgCcAcATATtGTGa
-50 5.1 GCACTATATATAGTGT
Shewanella halifaxensis HAW-EB4 Shal_2692 -81 4.1 ACGCCACATATTGTGA
-50 5.1 GCACTATATATAGTGT
Shewanella piezotolerans WP3 swp_3165 -80 3.6 gCgCcAcATATtGTGa
-49 5.3 ATACTATATGTAGTGT
Shewanella sediminis HAW-EB3 Ssed_1600 -80 4.2 ACGCAACATATTGTGC
-49 5.1 ACACTATATGTGGTGT
Shewanella woodyi ATCC 51908 Swoo_3049 -80 4.2 ACGCAACATATTGTGC
-49 5.1 ACACTATATGTGGTGT
Position: -95
Score: 4.4
Sequence: GCACCATATCTTGTGT
Locus tag: Sama_1728
Sama_1728 -95 4.4 GCACCATATCTTGTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdA
Ortholog function: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Shewanella oneidensis MR-1 SO2415 -202 3.7 CCTCACTATCTTGTAT
-171 5 ACACCATATCTTGTGT
Shewanella putrefaciens CN-32 Sputcn32_2073 -202 3.7 CCTCACTATCTTGTAT
-171 5 ACACCATATCTTGTGT
Shewanella sp W3-18-1 Sputw3181_1939 -202 3.7 CCTCACTATCTTGTAT
-171 5 ACACCATATCTTGTGT
Shewanella sp ANA-3 Shewana3_1969 -202 3.7 CCTCACTATCTTGTAT
-171 5 ACACCATATCTTGTGT
Shewanella sp MR-4 Shewmr4_1916 -202 3.7 CCTCACTATCTTGTAT
-171 5 ACACCATATCTTGTGT
Shewanella sp MR-7 Shewmr7_2062 -202 3.7 CCTCACTATCTTGTAT
-171 5 ACACCATATCTTGTGT
Shewanella baltica OS155 Sbal_2059 -203 3.7 CCTCACTATCTTGTAT
-172 5 ACACCATATCTTGTGT
Shewanella denitrificans OS217 Sden_1952 -336 3.7 ACTCACTATCTTGTAG
-304 5.4 ACACTATATCTTGTGT
Shewanella frigidimarina NCIMB 400 Sfri_2133 -254 3.7 CCTCACTATCTTGTAT
-223 5 ACACCATATCTTGTGT
Shewanella amazonensis SB2B Sama_1728 -126 3.7 CCTCACTATCTTGTAT
-95 4.4 GCACCATATCTTGTGT
Shewanella loihica PV-4 Shew_1946 -180 3.7 CCTCACTATCTTGTAT
-149 5 ACACCATATCTTGTGT
Shewanella pealeana ATCC 700345 Spea_2064 -165 5.2 ACACCATATATAGTGT
-163 4.2 ACCATATATAGTGTGT
Shewanella halifaxensis HAW-EB4 Shal_2036 -165 5.2 ACACCATATATAGTGT
-163 4.2 ACCATATATAGTGTGT
Shewanella piezotolerans WP3 swp_2478 -50 3.9 AAACACCATATATTGT
-48 5.1 ACACCATATATTGTGT
Shewanella sediminis HAW-EB3 Ssed_2306 -164 5.2 ACACCATATATAGTGT
-162 4.2 ACCATATATAGTGTGT
Shewanella woodyi ATCC 51908 Swoo_2303 -165 5.2 ACACCATATATAGTGT
-163 4.2 ACCATATATAGTGTGT