Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Shewanella amazonensis SB2B

Reference regulog properties
Source regulog: NarP - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella amazonensis SB2B
Orthologous TF(s) Sama_0646
Regulated genes 16
Built upon 249 sites [see more]
Predicted regulatory interactions in Shewanella amazonensis SB2B
Locus tag Position Score Sequence
Position: -262
Score: 4.9
Sequence: TACCCATTTATGGGTA
Locus tag: Sama_0544
Sama_0544 -262 4.9 TACCCATTTATGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp35
Ortholog function: Outer membrane porin, predicted
Shewanella amazonensis SB2B Sama_0544 -262 4.9 TACCCATTTATGGGTA
Position: -35
Score: 5.2
Sequence: TACCTCTTTATAAGTA
Locus tag: Sama_0611
Sama_0611 -35 5.2 TACCTCTTTATAAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fccA
Ortholog function: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Shewanella oneidensis MR-1 SO0970 -43 4.5 TATCCCTTATTAAGTA
Shewanella putrefaciens CN-32 Sputcn32_0905 -42 4.7 TAACCCTTATTAAGTA
Shewanella sp W3-18-1 Sputw3181_3267 -42 4.7 TAACCCTTATTAAGTA
Shewanella sp ANA-3 Shewana3_3318 -43 4.7 TAACCCTTATTAAGTA
Shewanella sp MR-4 Shewmr4_0808 -43 4.7 TAACCCTTATTAAGTA
Shewanella sp MR-7 Shewmr7_3215 -43 4.7 TAACCCTTATTAAGTA
Shewanella baltica OS155 Sbal_0859 -42 4.7 TAACCCTTATTAAGTA
Shewanella frigidimarina NCIMB 400 Sfri_3690 -313 4.6 TACCTCTTTATAACTA
Shewanella amazonensis SB2B Sama_0611 -35 5.2 TACCTCTTTATAAGTA
Shewanella loihica PV-4 Shew_3112 -268 4.5 TACCTCTTTGTGATTA
Shewanella pealeana ATCC 700345 Spea_0722 -101 4.5 TACCTCAAAGTGAGTA
Shewanella halifaxensis HAW-EB4 Shal_0776 -101 4.3 TACCTCGAATTGAGTA
Position: -160
Score: 4.9
Sequence: TACCCATTAAGTGGTA
Locus tag: Sama_0647
Sama_0647 -160 4.9 TACCCATTAAGTGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shewanella oneidensis MR-1 SO3981 -199 5.1 TACCTCTTAGGGGGTA
Shewanella putrefaciens CN-32 Sputcn32_0684 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp W3-18-1 Sputw3181_3487 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp ANA-3 Shewana3_0657 -163 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-4 Shewmr4_0658 -164 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-7 Shewmr7_3364 -164 5.1 TACCTCTTAGGGGGTA
Shewanella baltica OS155 Sbal_0793 -146 5.1 TACCTCTTAGGGGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0621 -188 5.1 TACCCCTTATGGGGTA
Shewanella amazonensis SB2B Sama_0647 -160 4.9 TACCCATTAAGTGGTA
Shewanella loihica PV-4 Shew_0843 -161 5.1 TACCCCTTATGGGGTA
Shewanella pealeana ATCC 700345 Spea_0830 -157 5 TACCTCCTATGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0885 -159 4.7 TACCTCCAACGAGGTA
Shewanella piezotolerans WP3 swp_3960 -263 5.1 TACCCCTTATGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0930 -161 4.9 TACCCCTAAGGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0971 -160 5.2 TACCCCTTATGAGGTA
Position: -101
Score: 5
Sequence: TACCACTTAATGGGTA
Locus tag: Sama_0648
Sama_0648 -101 5 TACCACTTAATGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewanella oneidensis MR-1 SO3980 -95 5.2 TACCCCCTAAGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_0685 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp W3-18-1 Sputw3181_3486 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp ANA-3 Shewana3_0658 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-4 Shewmr4_0659 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-7 Shewmr7_3363 -77 5.2 TACCCCCTAAGAGGTA
Shewanella baltica OS155 Sbal_0794 -95 5.2 TACCCCCTAAGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0622 -111 5 TACCCCATAAGGGGTA
Shewanella amazonensis SB2B Sama_0648 -101 5 TACCACTTAATGGGTA
Shewanella loihica PV-4 Shew_0844 -102 5 TACCCCATAAGGGGTA
Shewanella pealeana ATCC 700345 Spea_0831 -101 4.9 TACCTCATAGGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0886 -98 4.7 TACCTCGTTGGAGGTA
Shewanella piezotolerans WP3 swp_3958 -96 5 TACCCCATAAGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0931 -100 5 TACCCCCTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0972 -100 5 TACCTCATAAGGGGTA
Position: -192
Score: 4.9
Sequence: TACCCCTTTTGAAATA
Position: -133
Score: 5
Sequence: TACCCCCTATGAGGTA
Locus tag: Sama_1208
Sama_1208 -192 4.9 TACCCCTTTTGAAATA
-133 5 TACCCCCTATGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -204 5.2 TACCTCTTTAGAAATA
Shewanella putrefaciens CN-32 Sputcn32_1478 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp W3-18-1 Sputw3181_2623 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp ANA-3 Shewana3_2676 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-4 Shewmr4_2510 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-7 Shewmr7_2578 -203 5.2 TACCTCTTTAGAAATA
Shewanella baltica OS155 Sbal_1589 -204 5.2 TACCTCTTTAGAAATA
Shewanella frigidimarina NCIMB 400 Sfri_2637 -178 4.9 TACCTCTTTATTAATA
Shewanella amazonensis SB2B Sama_1208 -192 4.9 TACCCCTTTTGAAATA
-133 5 TACCCCCTATGAGGTA
Shewanella loihica PV-4 Shew_2525 -193 5.2 TACCCCTTTAGAAATA
Shewanella pealeana ATCC 700345 Spea_2698 -195 5.2 TACCTCTTTAGAAATA
Shewanella halifaxensis HAW-EB4 Shal_2784 -194 5.2 TACCTCTTTAGAAATA
Shewanella piezotolerans WP3 swp_3278 -193 5.1 TACCTCTTTATAAATA
Shewanella sediminis HAW-EB3 Ssed_1525 -205 5 TACCCCTTTATAAATA
Shewanella woodyi ATCC 51908 Swoo_3125 -218 5 TACCCCTTTATAAATA
Position: -182
Score: 5.1
Sequence: TACCCCTAAAGAAATA
Locus tag: Sama_1209
Sama_1209 -182 5.1 TACCCCTAAAGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omcA
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shewanella amazonensis SB2B Sama_1209 -182 5.1 TACCCCTAAAGAAATA
Shewanella loihica PV-4 Shew_2524 -214 5.1 TACCTCTAAAGAAATA
Position: -134
Score: 4.5
Sequence: TACCCCAAAGTGGGTA
Locus tag: Sama_1371
Sama_1371 -134 4.5 TACCCCAAAGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: Outer membrane protein W precursor
Shewanella oneidensis MR-1 SO1673 -135 4.6 TACCTAAAAATAAGTA
Shewanella putrefaciens CN-32 Sputcn32_1392 -242 4.1 TAACCCTTACTAGGTG
-132 4.6 TACCTATAAGTGGGTA
Shewanella sp W3-18-1 Sputw3181_2709 -242 4.2 TAACCCTTATTAGGTG
-132 4.6 TACCTATAAGTGGGTA
Shewanella sp ANA-3 Shewana3_2775 -132 4.8 TACCTCAAAATAAGTA
Shewanella sp MR-4 Shewmr4_2601 -132 4.8 TACCTCAAAATAAGTA
Shewanella sp MR-7 Shewmr7_2668 -132 4.8 TACCTCAAAATAAGTA
Shewanella baltica OS155 Sbal_1490 -132 4.5 TACCTATAAGTGAGTA
Shewanella frigidimarina NCIMB 400 Sfri_1334 -132 5 TACCTCTATAGTAGTA
Shewanella amazonensis SB2B Sama_1371 -134 4.5 TACCCCAAAGTGGGTA
Shewanella pealeana ATCC 700345 Spea_2787 -133 3.9 TATCTCGAAGTGGGTA
Shewanella piezotolerans WP3 swp_3395 -136 4.6 TATCTCTAAATGGGTA
Shewanella sediminis HAW-EB3 Ssed_1469 -133 4 TATCTATAACTGGGTA
Shewanella woodyi ATCC 51908 Swoo_3207 -133 4.1 TATCTATAAGTGGGTA
Position: -302
Score: 4.8
Sequence: TACCTCTTTGTAAATA
Position: -106
Score: 4.5
Sequence: TACCGATTTAGGGGTA
Locus tag: Sama_1620
Sama_1620 -302 4.8 TACCTCTTTGTAAATA
-106 4.5 TACCGATTTAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napE2
Ortholog function: Periplasmic nitrate reductase component NapE
Shewanella putrefaciens CN-32 Sputcn32_1901 -145 4.4 TACCGATTTGGAGGTA
Shewanella sp W3-18-1 Sputw3181_2107 -145 4.4 TACCGATTTGGAGGTA
Shewanella sp MR-4 Shewmr4_1840 -137 4.4 TACCGATTTGGAGGTA
Shewanella sp MR-7 Shewmr7_2137 -137 4.4 TACCGATTTGGAGGTA
Shewanella baltica OS155 Sbal_1908 -144 4.6 TACCAATTTGGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_2555 -119 4.3 TACCAATTTGTGAGTA
Shewanella amazonensis SB2B Sama_1620 -106 4.5 TACCGATTTAGGGGTA
Shewanella loihica PV-4 Shew_1768 -153 4.5 TACCGATTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_2682 -157 4.4 TACCAAGTTAGAGGTA
Position: -77
Score: 4.5
Sequence: TACCACTTTATATATA
Locus tag: Sama_2228
Sama_2228 -77 4.5 TACCACTTTATATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrF
Ortholog function: Decaheme cytochrome c MtrF
Shewanella oneidensis MR-1 SO1659 -80 4.9 TACCACTTTATAAGTA
Shewanella putrefaciens CN-32 Sputcn32_1380 -77 4.9 TACCACTTTATAAGTA
Shewanella sp W3-18-1 Sputw3181_2721 -77 4.9 TACCACTTTATAAGTA
Shewanella sp ANA-3 Shewana3_2787 -77 4.9 TACCACTTTATAAGTA
Shewanella sp MR-4 Shewmr4_2613 -78 4.9 TACCACTTTATAAGTA
Shewanella sp MR-7 Shewmr7_2680 -78 4.9 TACCACTTTATAAGTA
Shewanella baltica OS155 Sbal_1478 -78 4.7 TACCACTTTGTAAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0913 -191 4.9 TACCTCTTTAGGGTTA
Shewanella amazonensis SB2B Sama_2228 -77 4.5 TACCACTTTATATATA
Shewanella loihica PV-4 Shew_0918 -21 4.8 TACCTATAAAGGGATA
Shewanella piezotolerans WP3 swp_0896 -18 4.8 TACCTATAAAGGGATA
Position: -145
Score: 4.5
Sequence: TACCACCTTGTAGGTA
Locus tag: Sama_2753
Sama_2753 -145 4.5 TACCACCTTGTAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaD
Ortholog function: Na+/H+ antiporter NhaD
Shewanella amazonensis SB2B Sama_2753 -145 4.5 TACCACCTTGTAGGTA
Shewanella loihica PV-4 Shew_0699 -156 4.8 TACCACTTTGTAGGTA
Position: -105
Score: 4.8
Sequence: TACCTCCTAGTGGGTA
Locus tag: Sama_2982
Sama_2982 -105 4.8 TACCTCCTAGTGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD
Ortholog function: Periplasmic nitrate reductase component NapD
Shewanella oneidensis MR-1 SO0849 -119 4.9 TACCTCTTGTGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_3147 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp W3-18-1 Sputw3181_0796 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp ANA-3 Shewana3_3429 -118 4.8 TACCTCTTGCGAGGTA
Shewanella sp MR-4 Shewmr4_0705 -118 4.9 TACCTCTTGTGAGGTA
Shewanella sp MR-7 Shewmr7_3317 -118 4.9 TACCTCTTGTGAGGTA
Shewanella baltica OS155 Sbal_3510 -119 4.9 TACCTCTTGTGAGGTA
Shewanella amazonensis SB2B Sama_2982 -105 4.8 TACCTCCTAGTGGGTA
Shewanella loihica PV-4 Shew_3205 -123 4.9 TACCTCTCAAGAGGTA
Shewanella pealeana ATCC 700345 Spea_0624 -118 4.9 TACCCCTTGTGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0716 -119 4.7 TACCCCTTGCGAGGTA
Shewanella piezotolerans WP3 swp_4456 -111 4.9 TACCCCTTGTGAGGTA
Shewanella sediminis HAW-EB3 Ssed_3956 -132 4.7 TACCTCTTGTTGGGTA
Shewanella woodyi ATCC 51908 Swoo_4109 -124 5 TACCCCTTACTAGGTA
Position: -212
Score: 4.4
Sequence: TATCTCCAAAGTGGTA
Locus tag: Sama_2990
Sama_2990 -212 4.4 TATCTCCAAAGTGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3141
Ortholog function: Nonaheme cytochrome c lipoprotein
Shewanella sp MR-7 Shewmr7_1421 -215 4.6 TACCTCCAAAGATATA
Shewanella amazonensis SB2B Sama_2990 -212 4.4 TATCTCCAAAGTGGTA
Position: -331
Score: 4.8
Sequence: TACCTCTTTAGGGGTG
Locus tag: Sama_3177
Sama_3177 -331 4.8 TACCTCTTTAGGGGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: psrA
Ortholog function: Polysulfide reductase, subunit A
Shewanella oneidensis MR-1 SO4062 -179 5 TACCCCTTTAGGAATA
Shewanella sp ANA-3 Shewana3_3619 -181 5.1 TACCCCTTTAGGGATA
Shewanella amazonensis SB2B Sama_3177 -331 4.8 TACCTCTTTAGGGGTG
Shewanella piezotolerans WP3 swp_1238 -236 3.9 TACCACAATAGACATA
Position: -123
Score: 4
Sequence: TACTCCTTTTGGCATA
Locus tag: Sama_3236
Sama_3236 -123 4 TACTCCTTTTGGCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnrN
Ortholog function: Nitric oxide-dependent regulator DnrN
Shewanella putrefaciens CN-32 Sputcn32_3576 -137 4.6 TACTCCCTAAGGAATA
Shewanella sp W3-18-1 Sputw3181_3715 -137 4.6 TACTCCCTAAGGAATA
Shewanella sp ANA-3 Shewana3_0397 -127 4.4 TACTCACTTAGAGATA
Shewanella sp MR-4 Shewmr4_0398 -127 4.7 TACTCCCTTAGAGATA
Shewanella sp MR-7 Shewmr7_3627 -127 4.7 TACTCCCTTAGAGATA
Shewanella baltica OS155 Sbal_3989 -136 5 TACTCCTTAAGAGATA
Shewanella amazonensis SB2B Sama_3236 -123 4 TACTCCTTTTGGCATA
Position: -127
Score: 4.2
Sequence: TACACGTTTAGAGGTA
Locus tag: Sama_3524
Sama_3524 -127 4.2 TACACGTTTAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Shewanella oneidensis MR-1 SO4452 -167 4.8 TACCTGTTTAGGGGTA
Shewanella putrefaciens CN-32 Sputcn32_0389 -134 4.8 TACCTGTTTAGGGGTA
Shewanella sp W3-18-1 Sputw3181_0243 -134 4.8 TACCTGTTTAGGGGTA
Shewanella sp ANA-3 Shewana3_0274 -134 4.8 TACCTGTTTAGGGGTA
Shewanella sp MR-4 Shewmr4_0273 -134 4.6 TACCTGTTTGGGGGTA
Shewanella sp MR-7 Shewmr7_3748 -134 4.6 TACCTGTTTGGGGGTA
Shewanella baltica OS155 Sbal_0284 -134 4.8 TACCTGTTTAGGGGTA
Shewanella amazonensis SB2B Sama_3524 -127 4.2 TACACGTTTAGAGGTA