Propagation of NarP regulog to Shewanella putrefaciens 200
| Source regulog: | NarP - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Shewanella putrefaciens 200 |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 14 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -161
Score: 4.9 Sequence: TACCTCTTTAGGGTTA
Locus tag: Sput200DRAFT_3967
|
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| Sput200DRAFT_3967 | -161 | 4.9 | TACCTCTTTAGGGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: psrA | ||||
| Ortholog function: Polysulfide reductase, subunit A | ||||
| Shewanella oneidensis MR-1 | SO4062 | -179 | 5 | TACCCCTTTAGGAATA |
| Shewanella sp ANA-3 | Shewana3_3619 | -181 | 5.1 | TACCCCTTTAGGGATA |
| Shewanella amazonensis SB2B | Sama_3177 | -331 | 4.8 | TACCTCTTTAGGGGTG |
| Shewanella piezotolerans WP3 | swp_1238 | -236 | 3.9 | TACCACAATAGACATA |
|
Position: -217
Score: 3.7 Sequence: TAACTCGACAGAGTTA
Position: -162
Score: 3.7 Sequence: TATCACTAAAGTAGCA
Locus tag: Sput200DRAFT_4007
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| Sput200DRAFT_4007 | -217 | 3.7 | TAACTCGACAGAGTTA | |
| -162 | 3.7 | TATCACTAAAGTAGCA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crp | ||||
| Ortholog function: Cyclic AMP receptor protein, transcriptional regulator Crp | ||||
| Shewanella oneidensis MR-1 | SO0624 | -217 | 4.2 | TAACTCTACAGAGTTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0652 | -217 | 3.7 | TAACTCGACAGAGTTA |
| Shewanella sp W3-18-1 | Sputw3181_3522 | -217 | 3.7 | TAACTCGACAGAGTTA |
| Shewanella sp ANA-3 | Shewana3_0617 | -217 | 4.2 | TAACTCTACAGAGTTA |
| Shewanella sp MR-4 | Shewmr4_0618 | -217 | 4.2 | TAACTCTACAGAGTTA |
| Shewanella sp MR-7 | Shewmr7_3412 | -217 | 4.2 | TAACTCTACAGAGTTA |
| Shewanella baltica OS155 | Sbal_0578 | -217 | 3.7 | TAACTCGACAGAGTTA |
|
Position: -42
Score: 4.7 Sequence: TAACCCTTATTAAGTA
Locus tag: Sput200DRAFT_3216
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| Sput200DRAFT_3216 | -42 | 4.7 | TAACCCTTATTAAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fccA | ||||
| Ortholog function: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) | ||||
| Shewanella oneidensis MR-1 | SO0970 | -43 | 4.5 | TATCCCTTATTAAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0905 | -42 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp W3-18-1 | Sputw3181_3267 | -42 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp ANA-3 | Shewana3_3318 | -43 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp MR-4 | Shewmr4_0808 | -43 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp MR-7 | Shewmr7_3215 | -43 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella baltica OS155 | Sbal_0859 | -42 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3690 | -313 | 4.6 | TACCTCTTTATAACTA |
| Shewanella amazonensis SB2B | Sama_0611 | -35 | 5.2 | TACCTCTTTATAAGTA |
| Shewanella loihica PV-4 | Shew_3112 | -268 | 4.5 | TACCTCTTTGTGATTA |
| Shewanella pealeana ATCC 700345 | Spea_0722 | -101 | 4.5 | TACCTCAAAGTGAGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0776 | -101 | 4.3 | TACCTCGAATTGAGTA |
|
Position: -134
Score: 4.8 Sequence: TACCTGTTTAGGGGTA
Locus tag: Sput200DRAFT_0833
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| Sput200DRAFT_0833 | -134 | 4.8 | TACCTGTTTAGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaA | ||||
| Shewanella oneidensis MR-1 | SO4452 | -167 | 4.8 | TACCTGTTTAGGGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0389 | -134 | 4.8 | TACCTGTTTAGGGGTA |
| Shewanella sp W3-18-1 | Sputw3181_0243 | -134 | 4.8 | TACCTGTTTAGGGGTA |
| Shewanella sp ANA-3 | Shewana3_0274 | -134 | 4.8 | TACCTGTTTAGGGGTA |
| Shewanella sp MR-4 | Shewmr4_0273 | -134 | 4.6 | TACCTGTTTGGGGGTA |
| Shewanella sp MR-7 | Shewmr7_3748 | -134 | 4.6 | TACCTGTTTGGGGGTA |
| Shewanella baltica OS155 | Sbal_0284 | -134 | 4.8 | TACCTGTTTAGGGGTA |
| Shewanella amazonensis SB2B | Sama_3524 | -127 | 4.2 | TACACGTTTAGAGGTA |
|
Position: -137
Score: 4.6 Sequence: TACTCCCTAAGGAATA
Locus tag: Sput200DRAFT_2581
|
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| Sput200DRAFT_2581 | -137 | 4.6 | TACTCCCTAAGGAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dnrN | ||||
| Ortholog function: Nitric oxide-dependent regulator DnrN | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_3576 | -137 | 4.6 | TACTCCCTAAGGAATA |
| Shewanella sp W3-18-1 | Sputw3181_3715 | -137 | 4.6 | TACTCCCTAAGGAATA |
| Shewanella sp ANA-3 | Shewana3_0397 | -127 | 4.4 | TACTCACTTAGAGATA |
| Shewanella sp MR-4 | Shewmr4_0398 | -127 | 4.7 | TACTCCCTTAGAGATA |
| Shewanella sp MR-7 | Shewmr7_3627 | -127 | 4.7 | TACTCCCTTAGAGATA |
| Shewanella baltica OS155 | Sbal_3989 | -136 | 5 | TACTCCTTAAGAGATA |
| Shewanella amazonensis SB2B | Sama_3236 | -123 | 4 | TACTCCTTTTGGCATA |
|
Position: -340
Score: 4.5 Sequence: TACTCCTTAATGGTTA
Position: -145
Score: 4.4 Sequence: TACCGATTTGGAGGTA
Locus tag: Sput200DRAFT_1335
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| Sput200DRAFT_1335 | -340 | 4.5 | TACTCCTTAATGGTTA | |
| -145 | 4.4 | TACCGATTTGGAGGTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napE2 | ||||
| Ortholog function: Periplasmic nitrate reductase component NapE | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1901 | -145 | 4.4 | TACCGATTTGGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_2107 | -145 | 4.4 | TACCGATTTGGAGGTA |
| Shewanella sp MR-4 | Shewmr4_1840 | -137 | 4.4 | TACCGATTTGGAGGTA |
| Shewanella sp MR-7 | Shewmr7_2137 | -137 | 4.4 | TACCGATTTGGAGGTA |
| Shewanella baltica OS155 | Sbal_1908 | -144 | 4.6 | TACCAATTTGGAGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2555 | -119 | 4.3 | TACCAATTTGTGAGTA |
| Shewanella amazonensis SB2B | Sama_1620 | -106 | 4.5 | TACCGATTTAGGGGTA |
| Shewanella loihica PV-4 | Shew_1768 | -153 | 4.5 | TACCGATTTAGGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_2682 | -157 | 4.4 | TACCAAGTTAGAGGTA |
|
Position: -204
Score: 5.2 Sequence: TACCTCTTTAGAAATA
Locus tag: Sput200DRAFT_0551
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| Sput200DRAFT_0551 | -204 | 5.2 | TACCTCTTTAGAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrC | ||||
| Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC | ||||
| Shewanella oneidensis MR-1 | SO1778 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella putrefaciens CN-32 | Sputcn32_1478 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp W3-18-1 | Sputw3181_2623 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp ANA-3 | Shewana3_2676 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp MR-4 | Shewmr4_2510 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp MR-7 | Shewmr7_2578 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella baltica OS155 | Sbal_1589 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2637 | -178 | 4.9 | TACCTCTTTATTAATA |
| Shewanella amazonensis SB2B | Sama_1208 | -192 | 4.9 | TACCCCTTTTGAAATA |
| -133 | 5 | TACCCCCTATGAGGTA | ||
| Shewanella loihica PV-4 | Shew_2525 | -193 | 5.2 | TACCCCTTTAGAAATA |
| Shewanella pealeana ATCC 700345 | Spea_2698 | -195 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella halifaxensis HAW-EB4 | Shal_2784 | -194 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella piezotolerans WP3 | swp_3278 | -193 | 5.1 | TACCTCTTTATAAATA |
| Shewanella sediminis HAW-EB3 | Ssed_1525 | -205 | 5 | TACCCCTTTATAAATA |
| Shewanella woodyi ATCC 51908 | Swoo_3125 | -218 | 5 | TACCCCTTTATAAATA |
|
Position: -180
Score: 5.1 Sequence: TACCCCTAAAGAAATA
Locus tag: Sput200DRAFT_0552
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| Sput200DRAFT_0552 | -180 | 5.1 | TACCCCTAAAGAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omcA | ||||
| Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1479 | -180 | 5.1 | TACCCCTAAAGAAATA |
| Shewanella sp W3-18-1 | Sputw3181_2622 | -180 | 5.1 | TACCCCTAAAGAAATA |
|
Position: -77
Score: 4.9 Sequence: TACCACTTTATAAGTA
Locus tag: Sput200DRAFT_0028
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| Sput200DRAFT_0028 | -77 | 4.9 | TACCACTTTATAAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrF | ||||
| Ortholog function: Decaheme cytochrome c MtrF | ||||
| Shewanella oneidensis MR-1 | SO1659 | -80 | 4.9 | TACCACTTTATAAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1380 | -77 | 4.9 | TACCACTTTATAAGTA |
| Shewanella sp W3-18-1 | Sputw3181_2721 | -77 | 4.9 | TACCACTTTATAAGTA |
| Shewanella sp ANA-3 | Shewana3_2787 | -77 | 4.9 | TACCACTTTATAAGTA |
| Shewanella sp MR-4 | Shewmr4_2613 | -78 | 4.9 | TACCACTTTATAAGTA |
| Shewanella sp MR-7 | Shewmr7_2680 | -78 | 4.9 | TACCACTTTATAAGTA |
| Shewanella baltica OS155 | Sbal_1478 | -78 | 4.7 | TACCACTTTGTAAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0913 | -191 | 4.9 | TACCTCTTTAGGGTTA |
| Shewanella amazonensis SB2B | Sama_2228 | -77 | 4.5 | TACCACTTTATATATA |
| Shewanella loihica PV-4 | Shew_0918 | -21 | 4.8 | TACCTATAAAGGGATA |
| Shewanella piezotolerans WP3 | swp_0896 | -18 | 4.8 | TACCTATAAAGGGATA |
|
Position: -242
Score: 4.2 Sequence: TAACCCTTATTAGGTG
Position: -132
Score: 4.6 Sequence: TACCTATAAGTGGGTA
Locus tag: Sput200DRAFT_0042
|
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| Sput200DRAFT_0042 | -242 | 4.2 | TAACCCTTATTAGGTG | |
| -132 | 4.6 | TACCTATAAGTGGGTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: Outer membrane protein W precursor | ||||
| Shewanella oneidensis MR-1 | SO1673 | -135 | 4.6 | TACCTAAAAATAAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1392 | -242 | 4.1 | TAACCCTTACTAGGTG |
| -132 | 4.6 | TACCTATAAGTGGGTA | ||
| Shewanella sp W3-18-1 | Sputw3181_2709 | -242 | 4.2 | TAACCCTTATTAGGTG |
| -132 | 4.6 | TACCTATAAGTGGGTA | ||
| Shewanella sp ANA-3 | Shewana3_2775 | -132 | 4.8 | TACCTCAAAATAAGTA |
| Shewanella sp MR-4 | Shewmr4_2601 | -132 | 4.8 | TACCTCAAAATAAGTA |
| Shewanella sp MR-7 | Shewmr7_2668 | -132 | 4.8 | TACCTCAAAATAAGTA |
| Shewanella baltica OS155 | Sbal_1490 | -132 | 4.5 | TACCTATAAGTGAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1334 | -132 | 5 | TACCTCTATAGTAGTA |
| Shewanella amazonensis SB2B | Sama_1371 | -134 | 4.5 | TACCCCAAAGTGGGTA |
| Shewanella pealeana ATCC 700345 | Spea_2787 | -133 | 3.9 | TATCTCGAAGTGGGTA |
| Shewanella piezotolerans WP3 | swp_3395 | -136 | 4.6 | TATCTCTAAATGGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_1469 | -133 | 4 | TATCTATAACTGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_3207 | -133 | 4.1 | TATCTATAAGTGGGTA |
|
Position: -219
Score: 4.9 Sequence: TACCTCTAAAGTAATA
Locus tag: Sput200DRAFT_1754
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| Sput200DRAFT_1754 | -219 | 4.9 | TACCTCTAAAGTAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3141 | ||||
| Ortholog function: Nonaheme cytochrome c lipoprotein | ||||
| Shewanella oneidensis MR-1 | SO3140.1 | -205 | 4.3 | TACTTCCAAAGATATA |
| Shewanella oneidensis MR-1 | SO3140.2 | -205 | 4.3 | TACTTCCAAAGATATA |
| Shewanella putrefaciens CN-32 | Sputcn32_2507 | -219 | 4.9 | TACCTCTAAAGTAATA |
| Shewanella sp W3-18-1 | Sputw3181_1501 | -219 | 4.4 | TATCTCTAAAGTAATA |
| Shewanella sp ANA-3 | Shewana3_1409 | -216 | 4.6 | TACCTCCAAAGATATA |
| Shewanella sp MR-4 | Shewmr4_1356 | -215 | 4.6 | TACCTCCAAAGATATA |
| Shewanella baltica OS155 | Sbal_2843 | -217 | 4.4 | TACCTCCAAAGTATTA |
| Shewanella loihica PV-4 | Shew_2580 | -248 | 5 | TACCTCCAAAGAGATA |
| Shewanella woodyi ATCC 51908 | Swoo_4517 | -161 | 5.1 | TACCTCTTTAGTAGTA |
|
Position: -256
Score: 5.1 Sequence: TACCTCTTAAGTAGTA
Locus tag: Sput200DRAFT_3091
|
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| Sput200DRAFT_3091 | -256 | 5.1 | TACCTCTTAAGTAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp35 | ||||
| Ortholog function: Outer membrane porin, predicted | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0781 | -256 | 5.1 | TACCTCTTAAGTAGTA |
| Shewanella sp W3-18-1 | Sputw3181_3394 | -256 | 5.1 | TACCTCTTAAGTAGTA |
|
Position: -116
Score: 4.9 Sequence: TACCTCTTGTGAGGTA
Locus tag: Sput200DRAFT_2241
|
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| Sput200DRAFT_2241 | -116 | 4.9 | TACCTCTTGTGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napD | ||||
| Ortholog function: Periplasmic nitrate reductase component NapD | ||||
| Shewanella oneidensis MR-1 | SO0849 | -119 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3147 | -116 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_0796 | -116 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp ANA-3 | Shewana3_3429 | -118 | 4.8 | TACCTCTTGCGAGGTA |
| Shewanella sp MR-4 | Shewmr4_0705 | -118 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp MR-7 | Shewmr7_3317 | -118 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella baltica OS155 | Sbal_3510 | -119 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella amazonensis SB2B | Sama_2982 | -105 | 4.8 | TACCTCCTAGTGGGTA |
| Shewanella loihica PV-4 | Shew_3205 | -123 | 4.9 | TACCTCTCAAGAGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0624 | -118 | 4.9 | TACCCCTTGTGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0716 | -119 | 4.7 | TACCCCTTGCGAGGTA |
| Shewanella piezotolerans WP3 | swp_4456 | -111 | 4.9 | TACCCCTTGTGAGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_3956 | -132 | 4.7 | TACCTCTTGTTGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_4109 | -124 | 5 | TACCCCTTACTAGGTA |