Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Colwellia psychrerythraea 34H

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Colwellia psychrerythraea 34H
Orthologous TF(s) No orthologous TFs found
Regulated genes 81
Built upon 2713 sites [see more]
Predicted regulatory interactions in Colwellia psychrerythraea 34H
Locus tag Position Score Sequence
Position: -57
Score: 4
Sequence: TATTTTTACTTTCTTCATATAT
Locus tag: CPS_0026
CPS_0026 -57 4 TATTTTTACTTTCTTCATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: purE
Ortholog function: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Shewanella oneidensis MR-1 SO3554 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella oneidensis MR-1 SO3554 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella putrefaciens CN-32 Sputcn32_1041 -81 4 ATTTGCAATCATGATCACACAG
Shewanella putrefaciens CN-32 Sputcn32_1041 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3124 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp W3-18-1 Sputw3181_3124 -81 4 ATTTGCAATCATGATCACACAG
Shewanella sp ANA-3 Shewana3_3155 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp ANA-3 Shewana3_3155 -70 3.9 TTTTGCAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2975 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-4 Shewmr4_2975 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3057 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella sp MR-7 Shewmr7_3057 -70 4.5 TTTTGTAACTATGATCACACAA
Shewanella baltica OS155 Sbal_1036 -139 3.8 TGATATGAAATTGTTCGCAGTT
-95 4.1 TTTCGTTATATACTTAACAGAA
Shewanella denitrificans OS217 Sden_1224 -315 3.7 AATTCTGACTCATCTTAAATTA
Shewanella amazonensis SB2B Sama_1064 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella amazonensis SB2B Sama_1064 -82 4.1 AAATTTGCCAAAGCTCACACAT
Shewanella halifaxensis HAW-EB4 Shal_1245 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella halifaxensis HAW-EB4 Shal_1245 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella halifaxensis HAW-EB4 Shal_1245 -269 4.4 TTGTGGGATCTAGGTAACATTT
Shewanella sediminis HAW-EB3 Ssed_1333 -217 3.8 TATTGTGAAGTCATCCGGATAT
Shewanella woodyi ATCC 51908 Swoo_3321 -288 3.7 TCCAGCGACTTAGATCACATTT
Position: -329
Score: 4.1
Sequence: ATGTTTGACCTAGATCAATTTT
Locus tag: CPS_0236
CPS_0236 -329 4.1 ATGTTTGACCTAGATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4606
Ortholog function: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Shewanella oneidensis MR-1 SO4606 -317 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella putrefaciens CN-32 Sputcn32_3782 -309 4.4 ATAAGTGATCTTGATCAATATT
Shewanella sp W3-18-1 Sputw3181_0133 -309 4.4 ATAAGTGATCTTGATCAATATT
Shewanella sp ANA-3 Shewana3_3991 -318 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella sp MR-4 Shewmr4_3791 -318 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella sp MR-7 Shewmr7_3864 -317 4.2 AGAAGTGATCTTGATCAATTTT
Shewanella baltica OS155 Sbal_0154 -317 4.4 ATAAGTGATCTTGATCAATATT
Shewanella denitrificans OS217 Sden_3517 -316 4.4 AAAAGTGATCTTGATCAATATT
Shewanella frigidimarina NCIMB 400 Sfri_0258 -321 3.9 CAAAGTGATCTTGATCAATGTT
Shewanella amazonensis SB2B Sama_3483 -318 4.4 TAAAGTGATCTTGATCAATATT
Shewanella loihica PV-4 Shew_0125 -321 4.4 AAAAGTGATCTTGATCAATATT
-264 4 TTATTTGTTATATCGCACAATT
Position: -105
Score: 4.1
Sequence: AAAGGTGAAAAAAATCAAATAT
Locus tag: CPS_0550
CPS_0550 -105 4.1 AAAGGTGAAAAAAATCAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nifR3
Ortholog function: tRNA dihydrouridine synthase B (EC 1.-.-.-)
Shewanella loihica PV-4 Shew_0330 -274 3.8 AAGCGTGAGACACCTCACCCTG
-242 4.1 ACATTTGACGTCGATCACAAAC
Shewanella pealeana ATCC 700345 Spea_0390 -283 4.3 TTTCGTGAAGGAACTCACCCTT
-251 4.1 CTATTAGATCAAGATCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_3901 -281 3.9 TTTCGTGATCAGTGTCACTACA
-249 3.7 CTATTAGACGTAGATCACAAAC
Shewanella piezotolerans WP3 swp_0426 -286 4.5 AATCGTGACTTTGCTCACCCTA
Shewanella sediminis HAW-EB3 Ssed_4118 -53 5 TAATGTGATTGGTATTACAATA
Shewanella woodyi ATCC 51908 Swoo_0505 -233 4.5 TTTTTTGAACCACATCACAAAC
Position: -46
Score: 3.8
Sequence: ATATGTGAGATCGTATAAATAA
Locus tag: CPS_0910
CPS_0910 -46 3.8 ATATGTGAGATCGTATAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutC
Ortholog function: histidine utilization repressor
Shewanella oneidensis MR-1 SO0096 -151 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella putrefaciens CN-32 Sputcn32_0078 -178 4.1 TTATGTGAGCTGGCTTGTATTT
Shewanella sp W3-18-1 Sputw3181_3999 -178 4.1 TTATGTGAGCTGGCTTGTATTT
Shewanella sp ANA-3 Shewana3_0099 -142 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella sp MR-4 Shewmr4_0098 -142 4.1 TTATGTGAGCCAGCTTGTATTT
Shewanella sp MR-7 Shewmr7_0093 -142 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella baltica OS155 Sbal_4253 -177 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella loihica PV-4 Shew_3758 -138 4.1 TTATGTGAGCTAGCTTGTATTT
Shewanella pealeana ATCC 700345 Spea_4170 -106 3.8 ATTTGTGAGCTAGCTTGTGTTT
Shewanella halifaxensis HAW-EB4 Shal_0072 -106 3.9 ATTTGTGAGCCCGCTTGTATTT
Shewanella piezotolerans WP3 swp_0132 -177 4.2 ATTTGTGAGCTAGCTTGTATTT
Shewanella sediminis HAW-EB3 Ssed_4448 -150 4.1 AGTTGTGATCCAACTTGTATTT
Shewanella woodyi ATCC 51908 Swoo_4839 -201 4.1 AAGTGTGATCCAACTTGTATTT
Position: -107
Score: 3.9
Sequence: TTATACGATCCATATCAAGAAT
Locus tag: CPS_1034
CPS_1034 -107 3.9 TTATACGATCCATATCAAGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Shewanella oneidensis MR-1 SO0263 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella putrefaciens CN-32 Sputcn32_3727 -213 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella sp W3-18-1 Sputw3181_0188 -213 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella sp ANA-3 Shewana3_0231 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-4 Shewmr4_0231 -222 4.2 TTTTGTGATTAGAATCTCAGCA
Shewanella sp MR-7 Shewmr7_0226 -222 3.9 TTTTGTGATTAGAATCTCAGCG
Shewanella baltica OS155 Sbal_0228 -212 4.4 TTTTGTGATTAGAATCTCAACA
Shewanella denitrificans OS217 Sden_3569 -186 4 TTTTGTGATAAGCCTCCCAGCT
Shewanella frigidimarina NCIMB 400 Sfri_0179 -213 4.2 TTTTGTGATAACAATCTCAGCT
Shewanella amazonensis SB2B Sama_0245 -207 3.8 TTTTGTGAGTTCCCTCCCAGCT
Shewanella loihica PV-4 Shew_0190 -223 4.8 TTTTGTGATTAATATCAGAATT
Shewanella pealeana ATCC 700345 Spea_0215 -212 4.1 TTTTGTGATATTAATCTCGCCA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella halifaxensis HAW-EB4 Shal_4104 -212 3.9 TTTTGTGACATAAACCGTACTA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella piezotolerans WP3 swp_2043 -212 5 ATTTGTGATTTAAATCGCGTTA
-112 3.8 ATATTCGAACTACATCAAATTG
Shewanella sediminis HAW-EB3 Ssed_4287 -223 4.5 TTTTGTGATTTCAATCAAAGCT
Shewanella woodyi ATCC 51908 Swoo_4659 -224 4.2 TTTTATGACTTTAATCAAAGTA
Position: -49
Score: 4
Sequence: ATTTCTGATTAAAATCAACTTA
Position: -4
Score: 4.2
Sequence: AAATATGATCTCTTTAAAACAA
Locus tag: CPS_1346
CPS_1346 -49 4 ATTTCTGATTAAAATCAACTTA
-4 4.2 AAATATGATCTCTTTAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1328
Ortholog function: transcriptional regulator, LysR family
Shewanella oneidensis MR-1 SO1328 -109 4 AAAATCGATTTTGCTCACACAA
Shewanella putrefaciens CN-32 Sputcn32_1139 -109 3.8 AATGGCGATTCTGCTCACACTC
Shewanella sp W3-18-1 Sputw3181_3025 -109 3.9 AATGGCGATTCGGCTCACACTC
Shewanella sp ANA-3 Shewana3_3046 -109 3.9 AAAATCGATTTTGCTCACAGTA
Shewanella sp MR-4 Shewmr4_2868 -109 4 AAAATCGATTTTGCTCACACTA
Shewanella sp MR-7 Shewmr7_2950 -109 4 AAAATCGATTTTGCTCACACAA
Shewanella loihica PV-4 Shew_1035 -110 3.8 TTTTGGGCAGCGCTTCACACTT
Shewanella pealeana ATCC 700345 Spea_1016 -89 4.8 ATTTTTGATTCAGTTCACAAAC
Shewanella halifaxensis HAW-EB4 Shal_1064 -89 4.6 ATTTTTGATTCAGTTCACAGTC
Shewanella woodyi ATCC 51908 Swoo_1224 -111 4.3 ATTTTAGAGATAGCTCACATTT
Position: -83
Score: 3.9
Sequence: TAGTGTTATTGGTATTAAAATT
Locus tag: CPS_1550
CPS_1550 -83 3.9 TAGTGTTATTGGTATTAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: map
Ortholog function: methionine aminopeptidase (EC 3.4.11.18)
Shewanella pealeana ATCC 700345 Spea_2886 -104 4.2 TAATTTGAAAAAAAGCACAAAT
Shewanella halifaxensis HAW-EB4 Shal_2982 -92 3.7 TAATATGAAAAAAAGCACAAAC
Shewanella piezotolerans WP3 swp_3524 -93 4.2 TATTTTGAAAAAAAGCACAAAT
Shewanella sediminis HAW-EB3 Ssed_3162 -91 3.9 TATTGAGAGAGCAAACACAAAT
Position: 17
Score: 3.9
Sequence: ATTTTTGACCACCTTAAAAAAT
Locus tag: CPS_1952
CPS_1952 17 3.9 ATTTTTGACCACCTTAAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_2272
Ortholog function: hypothetical protein
Shewanella frigidimarina NCIMB 400 Sfri_2272 -125 4.1 TTTTATGACTTAGGTCAACTTA
Shewanella loihica PV-4 Shew_1498 -123 4.3 TAACTTGAACTGGCTCACGTAA
Shewanella pealeana ATCC 700345 Spea_1592 -100 4.8 ATATTTGATCCAGCTCAAACTT
Shewanella halifaxensis HAW-EB4 Shal_1660 -100 4.3 ATGCTTGATCTAGCTCAAACTT
Shewanella piezotolerans WP3 swp_1790 -100 4.1 CTCTATGATATAGCTCACAGAT
Shewanella sediminis HAW-EB3 Ssed_1827 -165 3.8 CAACTTGATTTCGCTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_2761 -220 4.1 AAACTTGATTTCGCTCAAGTAA
Position: -235
Score: 4.6
Sequence: TTTATTGATCTACATCAAATTT
Locus tag: CPS_1995
CPS_1995 -235 4.6 TTTATTGATCTACATCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shewanella oneidensis MR-1 SO2364 -173 4.3 TTTTTTGACATGGCTCAAGTAT
-125 4.1 AAATGTGAAGGATAACGCATTG
Shewanella putrefaciens CN-32 Sputcn32_1959 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp W3-18-1 Sputw3181_2046 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp ANA-3 Shewana3_2107 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-4 Shewmr4_2006 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-7 Shewmr7_1969 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella baltica OS155 Sbal_2201 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella baltica OS155 Sbal_4487 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella denitrificans OS217 Sden_1851 -182 4.7 TTTTTTGATGTAGCTCAAGTAT
Shewanella frigidimarina NCIMB 400 Sfri_2010 -186 4.4 TTTTTTGACTTAGCTCAAGTAT
Shewanella amazonensis SB2B Sama_1791 -180 4.3 TTTTTTGACACAGCTCAAGTAT
Shewanella loihica PV-4 Shew_1985 -178 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella pealeana ATCC 700345 Spea_2214 -219 4.1 TACCTTGATCTAGATCAACTTA
-176 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella halifaxensis HAW-EB4 Shal_2197 -221 4.5 AGATTTGATCTAGATCAACTTT
-178 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella piezotolerans WP3 swp_2572 -221 4.3 TAGCTTGATCTAGATCAACTTT
-178 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella sediminis HAW-EB3 Ssed_2211 -177 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_2425 -220 4.3 TAGCTTGATCTAGATCAACTTT
-177 4.4 TTTTTTGACATAGCTCAAGTAT
Position: -63
Score: 3.9
Sequence: TAATCTGATTTATGTAACCCAA
Position: -42
Score: 4.4
Sequence: ATTAGTGACCTTGATTACACTT
Locus tag: CPS_2145
CPS_2145 -63 3.9 TAATCTGATTTATGTAACCCAA
-42 4.4 ATTAGTGACCTTGATTACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysC
Ortholog function: adenylylsulfate kinase (EC 2.7.1.25)
Shewanella sp ANA-3 Shewana3_0866 -248 4.2 TTATGTGAGCTGATGCAAGTTT
Shewanella sp MR-4 Shewmr4_3069 -248 4.2 TTATGTGAGGTGACGCAAGTTT
Shewanella sp MR-7 Shewmr7_0903 -248 4.2 TTATGTGAGCTGATGCAAGTTT
Shewanella frigidimarina NCIMB 400 Sfri_3184 -37 4.2 ATATTTGAACATGGTCAAATAT
-7 4.1 AAATGTGATGGAGTTAGTATCT
Shewanella pealeana ATCC 700345 Spea_0666 -148 4.1 CAATGTGTTGCATGGCACATAA
Shewanella piezotolerans WP3 swp_4055 -119 4.3 TTTTATGATATGCATCACCTCA
Shewanella piezotolerans WP3 swp_1592 -204 3.9 TTTTGTTATGACGGTTGCATTT
Shewanella woodyi ATCC 51908 Swoo_1689 -66 4.2 TAAAGTGATGAATCTTAAATTT
Position: -236
Score: 3.6
Sequence: AAAATTGAATAATATTACAAAA
Locus tag: CPS_2215
CPS_2215 -236 3.6 AAAATTGAATAATATTACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Shewanella putrefaciens CN-32 Sputcn32_2273 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1735 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2519 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2187 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2347 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1423 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1784 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2493 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2955 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2818 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1833 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -21
Score: 3.6
Sequence: AAGTTTGAAAGGATTAAAAAAA
Locus tag: CPS_2220
CPS_2220 -21 3.6 AAGTTTGAAAGGATTAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucB
Ortholog function: dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61)
Shewanella putrefaciens CN-32 Sputcn32_2268 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1740 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2514 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2182 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2342 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1428 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1789 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2488 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2948 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2813 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1838 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -35
Score: 4
Sequence: TTTTGTTATCCCCGTTACCTAT
Locus tag: CPS_2253
CPS_2253 -35 4 TTTTGTTATCCCCGTTACCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3776
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3776 -137 4.2 CAATGTGAGCGGCTTCAAAATG
Shewanella putrefaciens CN-32 Sputcn32_3102 -147 4.2 CAATGTGAGCGGCTTCAAATTG
Shewanella sp W3-18-1 Sputw3181_0842 -147 4.2 CAATGTGAGCGGCTTCAAATTG
Shewanella sp ANA-3 Shewana3_0817 -141 4.2 CAATGTGAGCGGCTTCAAATTG
Shewanella sp MR-4 Shewmr4_3123 -141 4.2 CAATGTGAGCGGCTTCAAATTG
Shewanella sp MR-7 Shewmr7_0844 -30 3.8 TAACGTGTTCTACAACAAACTA
Shewanella baltica OS155 Sbal_3459 -146 3.8 GAGTGCGAGCTAGCTCAAATTT
Position: -77
Score: 3.7
Sequence: TAATTTGTTTTTTATCTCCATA
Locus tag: CPS_3475
CPS_3475 -77 3.7 TAATTTGTTTTTTATCTCCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydhD
Ortholog function: Probable monothiol glutaredoxin ydhD
Shewanella oneidensis MR-1 SO2880 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella putrefaciens CN-32 Sputcn32_1688 -156 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp W3-18-1 Sputw3181_2337 -156 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp ANA-3 Shewana3_1640 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp MR-4 Shewmr4_1573 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella sp MR-7 Shewmr7_1648 -157 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella baltica OS155 Sbal_1783 -156 4.5 ATTTGTGATGTGAATCATTGTT
Shewanella denitrificans OS217 Sden_1640 -137 4.5 TTTTGTGATGTGCATCATTGTT
Shewanella frigidimarina NCIMB 400 Sfri_1748 -155 4.5 TTTTGTGATGTGAATCATTGTT
Shewanella amazonensis SB2B Sama_1919 -173 4.2 ATCTGTGATGTGAATCATTCTT
Shewanella loihica PV-4 Shew_1835 -164 4.2 AGTTGTGATGTGAATCATTGTT
Shewanella pealeana ATCC 700345 Spea_1964 -154 3.6 ACTTGTGAAGTGTATCATTGTT
Shewanella halifaxensis HAW-EB4 Shal_2335 -154 3.9 AGTTGTGAAGTGTATCATTGTT
Shewanella piezotolerans WP3 swp_2753 -153 3.6 ACTTGTGAAGTGTATCATTGTT
Position: -32
Score: 4
Sequence: TTTTTTAACTTATATAACAAAA
Locus tag: CPS_3558
CPS_3558 -32 4 TTTTTTAACTTATATAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rplY
Ortholog function: LSU ribosomal protein L25p
Shewanella oneidensis MR-1 SO2112 -95 4.4 AAGTGTGATCAAGATCACGTGT
Shewanella putrefaciens CN-32 Sputcn32_1895 -245 4.4 AAATGTGATCTAGATCTCGTGT
Shewanella sp W3-18-1 Sputw3181_2113 -245 4.4 AAATGTGATCTAGATCTCGTGT
Shewanella sp ANA-3 Shewana3_1892 -234 3.8 TTTTTTGATTCAGATCAAAGCC
Shewanella sp MR-4 Shewmr4_1834 -255 4.1 AAGTGTGATCAAGATCGCGTGT
-234 4.3 TTTTTTGATTCAGATCAAAGAC
Shewanella sp MR-7 Shewmr7_2143 -255 4.1 AAGTGTGATCAAGATCGCGTGT
-234 4.3 TTTTTTGATTCAGATCAAAGAC
Shewanella baltica OS155 Sbal_1901 -247 4 CAGTGTGATCTAGATCGCGTGT
Shewanella amazonensis SB2B Sama_1614 -233 3.9 AAATGTGAACAAGATCACAGGC
Position: -98
Score: 4
Sequence: TATCTTGATATCAAACAAATTT
Locus tag: CPS_3569
CPS_3569 -98 4 TATCTTGATATCAAACAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0141
Ortholog function: sensory box/GGDEF family protein
Shewanella oneidensis MR-1 SO0141 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella putrefaciens CN-32 Sputcn32_0133 -174 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella sp W3-18-1 Sputw3181_3939 -174 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella sp ANA-3 Shewana3_0133 -163 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella sp MR-4 Shewmr4_0134 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella sp MR-7 Shewmr7_0128 -161 4.1 TTTCGTGAGCTAGATTAGATAT
Shewanella baltica OS155 Sbal_4220 -160 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella baltica OS155 Sbal_4221 -160 4.2 TTTCGTGACCTAGATTAGATAT
Shewanella amazonensis SB2B Sama_0142 -137 4.6 TTTTGTGATGTGGATTAGAAAT
Shewanella loihica PV-4 Shew_0041 -55 4 TTTCGTGACCTAGATTAGACTT
Shewanella piezotolerans WP3 swp_0168 -156 4 ATTCGTGACCTAGATTAGACTT
Shewanella sediminis HAW-EB3 Ssed_4373 -198 3.7 ATCATTGATAAATATAACAAAA
Shewanella woodyi ATCC 51908 Swoo_4765 -240 4 AATCGTGACTTAGATTAGACTT
Position: -134
Score: 4.3
Sequence: TAACTTGATTTAAATCAAGTTT
Locus tag: CPS_4012
CPS_4012 -134 4.3 TAACTTGATTTAAATCAAGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sbal_1323
Ortholog function: HTH-type transcriptional regulator BetI
Shewanella frigidimarina NCIMB 400 Sfri_1948 -111 4.9 TGTTGTGATCTATATCAAGTTA
Shewanella pealeana ATCC 700345 Spea_1009 -164 4.1 ATGCGTGAGGTGAGTCACGCTT
-135 3.7 AAGCTTGATCGTTATAACCCTA
Shewanella halifaxensis HAW-EB4 Shal_1059 -163 4.3 ATCTGTGAACCTTGTCGCATTT
Shewanella piezotolerans WP3 swp_3809 -141 4.7 TTCTGTGATTCAGGTCGCAAAT
Shewanella sediminis HAW-EB3 Ssed_1121 -140 4.3 ATCTGTGATGCAAGTCGCAATC
Position: -158
Score: 4.5
Sequence: TATAGTGAAAACTTTCACAATA
Locus tag: CPS_4595
CPS_4595 -158 4.5 TATAGTGAAAACTTTCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Shewanella oneidensis MR-1 SO0162 -150 3.8 CTCAATGATCCAGCTCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3571 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp W3-18-1 Sputw3181_3708 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp ANA-3 Shewana3_0147 -151 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-4 Shewmr4_0152 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-7 Shewmr7_0147 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella amazonensis SB2B Sama_0165 -145 4.1 TTTTCAGATCCGGCTCACACAT
Shewanella loihica PV-4 Shew_3623 -128 4.6 TTTCGCGATCTTCCTCACACAT
Shewanella pealeana ATCC 700345 Spea_0140 -112 4.9 TTTTTTGATCTAGTACACATAT
Shewanella halifaxensis HAW-EB4 Shal_4178 -112 4.8 TTTTTTGATCTTGCCCACATAT
Shewanella piezotolerans WP3 swp_0182 -113 4.9 TTTTTTGATCTAGTCCACATAT
Shewanella sediminis HAW-EB3 Ssed_4362 -142 4.1 AAACACGATCTTCCTCACACAT
Shewanella woodyi ATCC 51908 Swoo_4740 -100 3.8 AATCGTGACATAGCGCAAAGAC
Position: -138
Score: 3.8
Sequence: TTCTCTGATTTAAATCAAGAAA
Locus tag: CPS_4602
CPS_4602 -138 3.8 TTCTCTGATTTAAATCAAGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_4035
Ortholog function: Conserved hypothetical signal peptide protein
Shewanella denitrificans OS217 Sden_0638 -116 4 TTCTTTGATGTTAATCAAGCAT
Shewanella frigidimarina NCIMB 400 Sfri_4035 -131 3.8 ATATGTGACATACGCATCATAA
Shewanella amazonensis SB2B Sama_0589 -108 3.8 TTTGTTGATCTGGATCATTAAT
Shewanella loihica PV-4 Shew_3120 -108 4.2 TTTGTTGATCTTAATCAAAAAA
Shewanella pealeana ATCC 700345 Spea_0712 -106 4.4 ATTATTGATCTTTATCAAAAAA
Shewanella piezotolerans WP3 swp_4367 -104 4.1 AACCTTGATCTTAATCATAATT
Shewanella sediminis HAW-EB3 Ssed_3889 -107 4.2 TTTGTTGATCCTTATCAAAAAA
Shewanella woodyi ATCC 51908 Swoo_3788 -106 3.9 TTTGTTGATCTTAATCAAAAAC
Position: -37
Score: 4
Sequence: TAAAGTGATTAGTGTCTCCAAT
Locus tag: CPS_4800
CPS_4800 -37 4 TAAAGTGATTAGTGTCTCCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shewanella oneidensis MR-1 SO0432 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella putrefaciens CN-32 Sputcn32_3409 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp W3-18-1 Sputw3181_0534 -141 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp ANA-3 Shewana3_0433 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp MR-4 Shewmr4_0437 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella sp MR-7 Shewmr7_3592 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella baltica OS155 Sbal_3905 -66 4.1 GAGTGTGACCTGATTCATACTT
Shewanella denitrificans OS217 Sden_3377 -139 4.1 CAGTGTGAGCCGATTCATACTT
-67 3.9 AATTGTTAGCCTTATCACTATG
Shewanella frigidimarina NCIMB 400 Sfri_3771 -139 4.6 TAGTGTGAGCTGATTCATACTT
Shewanella amazonensis SB2B Sama_0382 -138 4 GAGTGTGAGCTGATTCATACTT
Shewanella loihica PV-4 Shew_3424 -140 4.3 GAGTGTGATCTGATTCATACTT
Shewanella pealeana ATCC 700345 Spea_0425 -268 4 TTATATAATTTAGATCAAGTTT
-160 4.8 AAGTGTGATCGGATTCATACTT
Shewanella halifaxensis HAW-EB4 Shal_0482 -247 3.7 TTATATAATTTAGATCAAGGTT
-139 5 AAATGTGATCGGATTCATACTT
Shewanella piezotolerans WP3 swp_4740 -245 3.9 TTATGTGATTAATCTCAGTGTT
-139 4.9 AAGTGTGATCTGATTCATACTT
Shewanella sediminis HAW-EB3 Ssed_0438 -141 4.4 GAGTGTGATCTGATTCAAACTT
Shewanella woodyi ATCC 51908 Swoo_0285 -139 4.4 GAGTGTGATCTGATTCAAACTT
Position: -134
Score: 3.7
Sequence: ATTTTTTATCTATGTTGCAATA
Locus tag: CPS_4839
CPS_4839 -134 3.7 ATTTTTTATCTATGTTGCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvC
Ortholog function: Ketol-acid reductoisomerase (EC 1.1.1.86)
Shewanella oneidensis MR-1 SO4349 -86 4 TATAGTGACTTCAATCACAACC
Shewanella putrefaciens CN-32 Sputcn32_3615 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp W3-18-1 Sputw3181_3755 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp ANA-3 Shewana3_0355 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp MR-4 Shewmr4_0361 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella sp MR-7 Shewmr7_3665 -86 4.3 TATAGTGATTTCAATCACAACC
Shewanella baltica OS155 Sbal_4032 -85 4.3 TATAGTGATTTCAATCACAACC
Shewanella frigidimarina NCIMB 400 Sfri_0421 -85 4.1 TATAGTGACTTCAATCACAACG
Shewanella amazonensis SB2B Sama_3282 -88 4.4 TATAGTGAGTTCAATCACAATC
Shewanella loihica PV-4 Shew_0288 -126 3.7 CAATGTGACGTTTCGAATATAT
-77 3.8 ATAGTTGATCTCATTCACAGCT
Shewanella piezotolerans WP3 swp_0358 -77 4.6 TATAGTGATCTCAATCACAGCT
Shewanella sediminis HAW-EB3 Ssed_4166 -78 4 TATAGTGATCTCAATCACTGCT
Shewanella woodyi ATCC 51908 Swoo_0441 -78 3.5 TATAGTGAATTCAATCACTGCT
Position: -283
Score: 4.3
Sequence: TTTTATTATCTAGATTACAAAA
Locus tag: CPS_5036
CPS_5036 -283 4.3 TTTTATTATCTAGATTACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_3096
Ortholog function: Outer membrane lipoprotein omp16 precursor
Shewanella amazonensis SB2B Sama_3096 -197 4 TAATGGTATTAATATCAAATAT
-40 3.7 AGTCGTTATACTGGCCACAAAA
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