Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TreR regulog to Colwellia psychrerythraea 34H

Reference regulog properties
Source regulog: TreR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Trehalose utilization
Effector: Trehalose
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Colwellia psychrerythraea 34H
Orthologous TF(s) CPS_0978
Regulated genes 2
Built upon 11 sites [see more]
Predicted regulatory interactions in Colwellia psychrerythraea 34H
Locus tag Position Score Sequence
Position: -76
Score: 6.4
Sequence: TTTTGCAAACGATTGCATAA
Locus tag: CPS_0980
CPS_0980 -76 6.4 TTTTGCAAACGATTGCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: Trehalose phosphorylase (EC 2.4.1.64)
Shewanella woodyi ATCC 51908 Swoo_1437 -73 6.4 TTTTGCAATCGTTTGCAAAA
Position: -151
Score: 6.4
Sequence: TTATGCAATCGTTTGCAAAA
Locus tag: CPS_0981
CPS_0981 -151 6.4 TTATGCAATCGTTTGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treT
Ortholog function: Predicted trehalose permease, MFS family, FucP subfamily
Shewanella frigidimarina NCIMB 400 Sfri_3505 -72 6.5 AAATGCAAACGATTGCATTA
Shewanella woodyi ATCC 51908 Swoo_1438 -175 6.4 TTTTGCAAACGATTGCAAAA