Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Colwellia psychrerythraea 34H

Reference regulog properties
Source regulog: LexA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Colwellia psychrerythraea 34H
Orthologous TF(s) CPS_0237
Regulated genes 8
Built upon 192 sites [see more]
Predicted regulatory interactions in Colwellia psychrerythraea 34H
Locus tag Position Score Sequence
Position: -48
Score: 5.1
Sequence: TCCTGTATATACTACCAGTA
Locus tag: CPS_0237
CPS_0237 -48 5.1 TCCTGTATATACTACCAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Shewanella oneidensis MR-1 SO_4603 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella putrefaciens CN-32 Sputcn32_3780 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp W3-18-1 Sputw3181_0135 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp ANA-3 Shewana3_3989 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-4 Shewmr4_3789 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-7 Shewmr7_3862 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella baltica OS155 Sbal_0156 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella denitrificans OS217 Sden_3515 -45 5.1 TACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella frigidimarina NCIMB 400 Sfri_0260 -45 5 CACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella amazonensis SB2B Sama_3481 -45 5.6 TACTGTATATACTGACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella loihica PV-4 Shew_0127 -45 4.9 TACTGTATATACTGACAGGT
-26 4.8 TACTGTATGGAAAGACAGGA
Shewanella pealeana ATCC 700345 Spea_3997 -45 5.2 TACTGTATATACTAACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella halifaxensis HAW-EB4 Shal_0260 -45 4.9 TACTGTATATACTGACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella piezotolerans WP3 swp_4821 -45 5.2 TACTGTATATACTAACAGGT
-26 5 TACTGTATAGAAAAACAGGT
Shewanella sediminis HAW-EB3 Ssed_0200 -45 5.6 TACTGTATATACTAACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Shewanella woodyi ATCC 51908 Swoo_0180 -45 5.3 TACTGTATATACTGACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Position: -38
Score: 5.9
Sequence: TACTGTTTTTATATACAGTT
Locus tag: CPS_1040
CPS_1040 -38 5.9 TACTGTTTTTATATACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dinB
Ortholog function: DNA polymerase IV (EC 2.7.7.7)
Shewanella oneidensis MR-1 SO_1114 -44 5.9 AACTGTTTTTATATACAGTA
Shewanella putrefaciens CN-32 Sputcn32_0951 20 5.7 TACTGGTTTTATATACAGTA
Shewanella sp W3-18-1 Sputw3181_3225 -43 5.7 TACTGGTTTTATATACAGTA
Shewanella sp ANA-3 Shewana3_0949 -44 6.1 TACTGTTTTTATATACAGTA
Shewanella sp MR-4 Shewmr4_0947 -44 6.1 TACTGTTTTTATATACAGTA
Shewanella sp MR-7 Shewmr7_0985 -44 6.1 TACTGTTTTTATATACAGTA
Shewanella baltica OS155 Sbal_0935 -43 6.1 TACTGTTTTTATATACAGTA
Shewanella denitrificans OS217 Sden_1185 -52 5.8 CACTGTTTTTTTATACAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0961 -57 6.1 TACTGTTTTTATATACAGTA
Shewanella amazonensis SB2B Sama_2527 -36 6.1 TACTGTTTTTATATACAGTA
Shewanella loihica PV-4 Shew_2871 -43 5.9 TACTGTTTAAATGTACAGTA
Shewanella pealeana ATCC 700345 Spea_3092 -44 6.1 TACTGTTTTTATATACAGTA
Shewanella halifaxensis HAW-EB4 Shal_3176 -44 6.1 TACTGTTTTTATATACAGTA
Shewanella piezotolerans WP3 swp_1179 -95 6.1 TACTGTTTTTATATACAGTA
Shewanella sediminis HAW-EB3 Ssed_3422 -56 6 TACTGTTTAAATATACAGTA
Shewanella woodyi ATCC 51908 Swoo_3604 -52 6 CACTGTTTTTATATACAGTA
Position: -35
Score: 6
Sequence: TACTGTATTTATGTACAGTA
Locus tag: CPS_1635
CPS_1635 -35 6 TACTGTATTTATGTACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: umuD
Ortholog function: DNA polymerase V, subunit UmuD
Shewanella oneidensis MR-1 SO_A0013 -32 5.6 AACTGTATATTTATACAGTT
Shewanella putrefaciens CN-32 Sputcn32_0175 -32 5.4 AACTGTATATTTGTACAGTT
Shewanella baltica OS155 Sbal_3554 -30 5.6 TGCTGTATATAATTACAGTG
Shewanella frigidimarina NCIMB 400 Sfri_1963 -58 5.9 TACTGTTTATTTATACAGTG
-43 4.8 CAGTGTGTTTTTATACAGTA
Shewanella pealeana ATCC 700345 Spea_2196 -34 5.7 TACTGTATAAACATACAGTT
Shewanella halifaxensis HAW-EB4 Shal_2170 -35 5.7 TACTGTACAAATATACAGTT
Shewanella halifaxensis HAW-EB4 Shal_2184 -34 5.9 TACTGTATAAAAATACAGTG
Shewanella woodyi ATCC 51908 Swoo_2465 -38 5.3 TACTGTATAAAAACACAGTT
Position: -57
Score: 5.1
Sequence: ACCTGTTAATATATACAGCA
Locus tag: CPS_2272
CPS_2272 -57 5.1 ACCTGTTAATATATACAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dinG
Ortholog function: ATP-dependent helicase DinG/Rad3
Shewanella oneidensis MR-1 SO_1819 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella putrefaciens CN-32 Sputcn32_1513 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella sp W3-18-1 Sputw3181_2587 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella sp ANA-3 Shewana3_2630 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella sp MR-4 Shewmr4_2470 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella sp MR-7 Shewmr7_2538 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella baltica OS155 Sbal_1629 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella denitrificans OS217 Sden_2429 -52 5.4 CACTGTTATTATGTACAGCA
Shewanella frigidimarina NCIMB 400 Sfri_2630 -51 5.4 CACTGTTATTATGTACAGCA
Shewanella amazonensis SB2B Sama_1249 -42 5.4 CACTGTTATTATGTACAGCA
Shewanella loihica PV-4 Shew_2483 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella pealeana ATCC 700345 Spea_2656 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella halifaxensis HAW-EB4 Shal_2730 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella piezotolerans WP3 swp_3212 -10 5.4 CACTGTTATTATGTACAGCA
Shewanella sediminis HAW-EB3 Ssed_1566 -36 5.1 CACTGTTATTATGTACAGCT
Shewanella woodyi ATCC 51908 Swoo_3086 -37 5.1 CACTGTTATTATGTACAGCT
Position: -58
Score: 5.7
Sequence: TACTGTATAAATTAACAGTT
Locus tag: CPS_3825
CPS_3825 -58 5.7 TACTGTATAAATTAACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Shewanella oneidensis MR-1 SO_3462 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella putrefaciens CN-32 Sputcn32_2771 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp W3-18-1 Sputw3181_1241 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp ANA-3 Shewana3_1104 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp MR-4 Shewmr4_1104 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp MR-7 Shewmr7_1170 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella baltica OS155 Sbal_3153 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella denitrificans OS217 Sden_1151 -71 5.4 TACTGTATAAAAAACCAGTG
-49 5.6 TACTGTTTATCAATACAGTG
Shewanella frigidimarina NCIMB 400 Sfri_1043 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella amazonensis SB2B Sama_1026 -73 5.4 TACTGTACAAAAAATCAGTA
-51 5.3 TACTGTGTATCAATACAGTA
Shewanella loihica PV-4 Shew_1196 -62 5.7 TACTGTATAAAAATTCAGTA
-40 4.9 TACTGTGCATGAATACAGTA
Shewanella pealeana ATCC 700345 Spea_1169 -62 5.9 TACTGTATGAATAAACAGTA
-40 5.3 TACTGTTTAACCATACAGTG
Shewanella halifaxensis HAW-EB4 Shal_1212 -62 5.8 TACTGTATAGATAAACAGTA
-40 5.5 TACTGTTTAACTATACAGTG
Shewanella piezotolerans WP3 swp_1346 -61 5.7 TACTGTATAGAAAAACAGTA
-39 5.6 TACTGTTTATCAATACAGTG
Shewanella sediminis HAW-EB3 Ssed_1281 -62 5.8 TACTGTATATAAAATCAGTA
-40 5.5 TACTGTTTAAAAACACAGTA
Shewanella woodyi ATCC 51908 Swoo_3359 -64 5.9 TACTGTATTTATGAACAGTA
-42 5.9 TACTGTTCATAAATACAGTA
Position: -68
Score: 5.4
Sequence: TACTGTACGAACTTACAGTA
Locus tag: CPS_4134
CPS_4134 -68 5.4 TACTGTACGAACTTACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombinase A
Shewanella oneidensis MR-1 SO_3430 -127 5.6 TACTGTATGATTGTACAGTA
Shewanella putrefaciens CN-32 Sputcn32_2747 -129 5.6 TACTGTATGATTGTACAGTA
Shewanella sp W3-18-1 Sputw3181_1265 -129 5.6 TACTGTATGATTGTACAGTA
Shewanella sp ANA-3 Shewana3_1126 -128 5.6 TACTGTATGATTGTACAGTA
Shewanella sp MR-4 Shewmr4_1125 -128 5.6 TACTGTATGATTGTACAGTA
Shewanella sp MR-7 Shewmr7_1196 -128 5.6 TACTGTATGATTGTACAGTA
Shewanella baltica OS155 Sbal_3117 -127 5.6 TACTGTATGATTGTACAGTA
Shewanella denitrificans OS217 Sden_1208 -203 5.8 TACTGTATGATTATACAGTA
Shewanella frigidimarina NCIMB 400 Sfri_1062 -113 5.5 TACTGTATGACTATACAGTA
Shewanella amazonensis SB2B Sama_1046 -115 5.6 TACTGTATGATTGTACAGTA
Shewanella loihica PV-4 Shew_1215 -127 5.6 TACTGTATGATTGTACAGTA
Shewanella pealeana ATCC 700345 Spea_1195 -124 5.6 TACTGTATGATTGTACAGTA
Shewanella halifaxensis HAW-EB4 Shal_1232 -124 5.6 TACTGTATGATTGTACAGTA
Shewanella piezotolerans WP3 swp_1366 -123 5.6 TACTGTATGATTGTACAGTA
Shewanella sediminis HAW-EB3 Ssed_1300 -135 5.6 TACTGTATGATTGTACAGTA
Shewanella woodyi ATCC 51908 Swoo_3340 -124 5.5 TACTGTATGACTATACAGTA
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