Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NhaR regulog to Shewanella sp MR-4

Reference regulog properties
Source regulog: NhaR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator
Biological process: Osmotic stress response
Effector: Potassium ion
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sp MR-4
Orthologous TF(s) Shewmr4_2858
Regulated genes 3
Built upon 33 sites [see more]
Predicted regulatory interactions in Shewanella sp MR-4
Locus tag Position Score Sequence
Position: -88
Score: 5.6
Sequence: CCTCGATAACGTCGAGG
Locus tag: Shewmr4_2010
Shewmr4_2010 -88 5.6 CCTCGATAACGTCGAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoH
Ortholog function: Cbb3-type cytochrome oxidase assembly protein
Shewanella oneidensis MR-1 SO_2360 -88 5.6 CCTCGATAACCTCGAGG
Shewanella putrefaciens CN-32 Sputcn32_1955 -86 5.5 CCTCGAGAGTATCGAGG
Shewanella sp W3-18-1 Sputw3181_2050 -86 5.5 CCTCGAGAGTATCGAGG
Shewanella sp ANA-3 Shewana3_2111 -88 5.6 CCTCGATAACGTCGAGG
Shewanella sp MR-4 Shewmr4_2010 -88 5.6 CCTCGATAACGTCGAGG
Shewanella sp MR-7 Shewmr7_1965 -88 5.6 CCTCGATAACGTCGAGG
Shewanella baltica OS155 Sbal_2205 -88 5.4 CCTCGAAGACTTCGAGG
Shewanella frigidimarina NCIMB 400 Sfri_2014 -94 5.9 CCTCGAGATTATCGAGG
Shewanella pealeana ATCC 700345 Spea_2218 -115 5.3 CCTCGTTAACAACGAGG
Shewanella halifaxensis HAW-EB4 Shal_2201 -114 5.3 CCTCGTCATTAACGAGG
Shewanella piezotolerans WP3 swp_2576 -103 4.9 CCTCGTCACTTACGAGG
Shewanella sediminis HAW-EB3 Ssed_2215 -88 5.6 CCTCGATCTTATCGAGG
Shewanella woodyi ATCC 51908 Swoo_2421 -88 5.2 CCTCGATCGTATCGAGG
Position: -96
Score: 5.7
Sequence: CCTCGGAATTAACGAGG
Locus tag: Shewmr4_2860
Shewmr4_2860 -96 5.7 CCTCGGAATTAACGAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaA
Ortholog function: Na+/H+ antiporter NhaA
Shewanella oneidensis MR-1 SO_1336 -97 5.6 CCTCGGAATAGCCGAGG
Shewanella putrefaciens CN-32 Sputcn32_1147 -96 5.6 CCTCGGAATAGCCGAGG
Shewanella sp W3-18-1 Sputw3181_3017 -96 5.6 CCTCGGAATAGCCGAGG
Shewanella sp ANA-3 Shewana3_3038 -97 6 CCTCGGAATTATCGAGG
Shewanella sp MR-4 Shewmr4_2860 -96 5.7 CCTCGGAATTAACGAGG
Shewanella sp MR-7 Shewmr7_2942 -96 5.7 CCTCGGAATTAACGAGG
Shewanella baltica OS155 Sbal_1189 -96 5.8 CCTCGGAATAACCGAGG
Shewanella denitrificans OS217 Sden_2778 -93 4.4 TATCGGTATTATCGATA
Shewanella frigidimarina NCIMB 400 Sfri_2941 -94 5 CCTCGGTTAAACCGAGT
Shewanella amazonensis SB2B Sama_0868 -98 5.9 CCTCGGAAATTTCGAGG
Shewanella loihica PV-4 Shew_1042 -97 5.6 CCTCGGAATTACCGATG
Shewanella pealeana ATCC 700345 Spea_1025 -292 4.7 GCTCGTTATTTTCGATG
-97 4.6 CTTCGGATATTCCGACG
Shewanella halifaxensis HAW-EB4 Shal_1071 -292 4.7 CTTCGATTTTTTCGAGT
-97 4.6 CTTCGGATATCCCGATG
Shewanella piezotolerans WP3 swp_3792 -174 5.3 CCTCGGATATTCCGATG
Shewanella sediminis HAW-EB3 Ssed_1136 -96 5.5 CCTCGGGAATACCGATG
Position: -30
Score: 5.9
Sequence: CCTCGGTATTGCCGAGG
Locus tag: Shewmr4_3513
Shewmr4_3513 -30 5.9 CCTCGGTATTGCCGAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: otr
Ortholog function: Octaheme tetrathionate reductase
Shewanella sp ANA-3 Shewana3_3690 -30 5.5 CCTCGGTACTGCCGAGG
Shewanella sp MR-4 Shewmr4_3513 -30 5.9 CCTCGGTATTGCCGAGG
Shewanella sp MR-7 Shewmr7_0439 -30 5.6 CCTCGGTATCGCCGAGG
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