Propagation of Crp regulog to Alteromonadales bacterium TW-7
| Source regulog: | Crp - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Alteromonadales bacterium TW-7 |
| Orthologous TF(s) | No orthologous TFs found |
| Regulated genes | 58 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -118
Score: 3.9 Sequence: ACACATGATTTAAATCACCAAA
Locus tag: ATW7_04397
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| ATW7_04397 | -118 | 3.9 | ACACATGATTTAAATCACCAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiA-1 | ||||
| Ortholog function: ribosomal subunit interface protein | ||||
| Shewanella oneidensis MR-1 | SO3403 | -142 | 4.7 | TTCTTTGATAGGTCTCACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2725 | -145 | 4.9 | TTCTTTGATGTAACTCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_1287 | -145 | 4.9 | TTCTTTGATGTAACTCACATTT |
| Shewanella sp ANA-3 | Shewana3_1151 | -142 | 4.6 | TTCTTTGATAAGTCTCACATTT |
| Shewanella sp MR-4 | Shewmr4_1150 | -142 | 4.6 | TTCTTTGATAAATCTCACATTT |
| Shewanella sp MR-7 | Shewmr7_1221 | -142 | 5 | TTTTTTGATAAATCTCACATTT |
| Shewanella baltica OS155 | Sbal_1239 | -222 | 4.2 | TTTTGTGATTGATTTATTATTA |
| -144 | 4.3 | CTTCTTGATGGCGGTCACATTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1258 | -319 | 3.9 | AAGAGTGATAAAAATCAAGCTA |
| -230 | 3.8 | TATCCTGATGAATGCCACAATT | ||
| Shewanella piezotolerans WP3 | swp_3408 | -177 | 4.1 | TGATGTGATAAAAAGCACTCAT |
|
Position: -90
Score: 3.8 Sequence: TATTGTTAATAAAAACACATTG
Locus tag: ATW7_15529
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| ATW7_15529 | -90 | 3.8 | TATTGTTAATAAAAACACATTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4743 | ||||
| Ortholog function: ferrichrome-iron receptor | ||||
| Shewanella oneidensis MR-1 | SO4743 | -164 | 4.9 | AATTTTGATCTGTATCACGCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3953 | -116 | 4.7 | TAATTTGATCGGTATCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_4050 | -116 | 4.7 | TAATTTGATCGGTATCACACTC |
| Shewanella sp MR-4 | Shewmr4_3922 | -116 | 4.3 | AAACTTGATCTAAGTCACGCTA |
| Shewanella sp MR-7 | Shewmr7_4014 | -116 | 4.3 | AAACTTGATCTAAGTCACGCTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_4042 | -116 | 4.7 | ATTTTTGATATATATCACAGTC |
| Shewanella halifaxensis HAW-EB4 | Shal_4287 | -46 | 3.8 | TATTGCGACTCAATTAATACAT |
| Shewanella piezotolerans WP3 | swp_5150 | -117 | 4.3 | TGTTGTGCGCGAGTTCACATTG |
| Shewanella woodyi ATCC 51908 | Swoo_4894 | -91 | 3.8 | CTTTTTGATCTTTATCTAGTTT |
|
Position: -76
Score: 3.7 Sequence: TTTGTTGATTTGCTTCATCATT
Locus tag: ATW7_02127
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| ATW7_02127 | -76 | 3.7 | TTTGTTGATTTGCTTCATCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3682 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3682 | -109 | 3.8 | TTGCGTGATTTTGTGCAAGCAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2981 | -76 | 3.8 | ATTTTTGAGCAAGATCACGGCT |
| Shewanella sp W3-18-1 | Sputw3181_0966 | -76 | 3.8 | ATTTTTGAGCAAGATCACGGCT |
| Shewanella sp MR-4 | Shewmr4_0873 | -166 | 3.7 | TGACGTGATTTGTGGCGTATAA |
| Shewanella sp MR-7 | Shewmr7_3149 | -166 | 3.7 | TGACGTGATTTGTGGCGTATAA |
| Shewanella baltica OS155 | Sbal_3331 | -76 | 3.7 | ATTTTTGAGCAATATCACGGCT |
| Shewanella amazonensis SB2B | Sama_2854 | -78 | 4 | AAACTTGATCTGGATCACGAGT |
| Shewanella loihica PV-4 | Shew_3102 | -84 | 4.2 | AAATGTGATCTGGATCAAGTGG |
| Shewanella pealeana ATCC 700345 | Spea_3356 | -102 | 4.7 | AATTGTGAGCTAGATCAAACTC |
| Shewanella halifaxensis HAW-EB4 | Shal_3428 | -90 | 4.8 | AATTGTGACTGAGATCAAATTC |
| Shewanella piezotolerans WP3 | swp_1054 | -79 | 4.3 | TTTTGTGAGCAAGATCAACTTC |
| Shewanella sediminis HAW-EB3 | Ssed_3715 | -111 | 4.2 | CAGTGTGATCTCGATCAACTTC |
|
Position: -157
Score: 3.8 Sequence: TACTGCTATTGTGATCACCTTT
Position: -151
Score: 4.6 Sequence: TATTGTGATCACCTTTACGTTT
Locus tag: ATW7_17763
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| ATW7_17763 | -157 | 3.8 | TACTGCTATTGTGATCACCTTT | |
| -151 | 4.6 | TATTGTGATCACCTTTACGTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yceI | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1651 | -70 | 3.8 | TAAATGGATGTAAATCACGATT |
| Shewanella sp W3-18-1 | Sputw3181_2375 | -70 | 3.8 | TAAATGGATGTAAATCACGATT |
| Shewanella sp ANA-3 | Shewana3_1628 | -102 | 4.6 | TTAGGTGATCTTTGTCACAGAT |
| Shewanella sp MR-4 | Shewmr4_1561 | -103 | 4.8 | TTAGGTGATCTTTGTCACAAAT |
| Shewanella sp MR-7 | Shewmr7_1636 | -103 | 4.8 | TTAGGTGATCTTTGTCACAAAT |
| Shewanella baltica OS155 | Sbal_1772 | -105 | 4.7 | TTAGGTGATGTGGGTCACGTTT |
| Shewanella pealeana ATCC 700345 | Spea_2476 | -166 | 3.8 | TTACGTGCTGAATTGCAAAATT |
| -69 | 3.8 | AATTGTTACGCATCTTACGCTA | ||
| Shewanella piezotolerans WP3 | swp_3020 | -42 | 3.8 | TACATTGATATCTATCACTATT |
|
Position: -45
Score: 3.8 Sequence: AAATTTGGTTTACTTAACGTTA
Locus tag: ATW7_17773
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| ATW7_17773 | -45 | 3.8 | AAATTTGGTTTACTTAACGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: engB | ||||
| Ortholog function: GTP-binding protein EngB | ||||
| Shewanella oneidensis MR-1 | SO4667 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3907 | -96 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella sp W3-18-1 | Sputw3181_0044 | -96 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella sp ANA-3 | Shewana3_4110 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella sp MR-4 | Shewmr4_3906 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella sp MR-7 | Shewmr7_3998 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella baltica OS155 | Sbal_0052 | -95 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella denitrificans OS217 | Sden_3621 | -182 | 3.8 | TATTATGCTCGAAATAATATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3944 | -104 | 4.7 | TAATGTGATCAGGCTAATATTT |
| Shewanella amazonensis SB2B | Sama_0092 | -96 | 4.1 | ATATGTGATCGGGGCAATATTT |
| Shewanella loihica PV-4 | Shew_3715 | -95 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella pealeana ATCC 700345 | Spea_0101 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4221 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella piezotolerans WP3 | swp_5074a | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0095 | -95 | 4.7 | TTATGTGATCGAGGTAATATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0058 | -110 | 4.8 | TATTGTGATCGAGGTAATATTT |
|
Position: -257
Score: 3.7 Sequence: TAACGTTAAGTAAACCAAATTT
Locus tag: ATW7_17778
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| ATW7_17778 | -257 | 3.7 | TAACGTTAAGTAAACCAAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cytcB | ||||
| Ortholog function: Cytochrome c4 | ||||
| Shewanella oneidensis MR-1 | SO4666 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella oneidensis MR-1 | SO4666 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3908 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3908 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp W3-18-1 | Sputw3181_0043 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp W3-18-1 | Sputw3181_0043 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp ANA-3 | Shewana3_4111 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp ANA-3 | Shewana3_4111 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-4 | Shewmr4_3907 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-4 | Shewmr4_3907 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-7 | Shewmr7_3999 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-7 | Shewmr7_3999 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella baltica OS155 | Sbal_0051 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella baltica OS155 | Sbal_0051 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella denitrificans OS217 | Sden_3622 | -94 | 3.7 | AAATATTATTTCGAGCATAATA |
| Shewanella denitrificans OS217 | Sden_3622 | -94 | 3.7 | AAATATTATTTCGAGCATAATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3945 | -181 | 4.3 | AAATATTAGCCTGATCACATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3945 | -181 | 4.3 | AAATATTAGCCTGATCACATTA |
| Shewanella amazonensis SB2B | Sama_0091 | -95 | 3.7 | AAATATTGCCCCGATCACATAT |
| Shewanella loihica PV-4 | Shew_3716 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella loihica PV-4 | Shew_3716 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella pealeana ATCC 700345 | Spea_0100 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella pealeana ATCC 700345 | Spea_0100 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4222 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4222 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella piezotolerans WP3 | swp_5075 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella piezotolerans WP3 | swp_5075 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella sediminis HAW-EB3 | Ssed_0094 | -96 | 4.5 | AAATATTACCTCGATCACATAA |
| Shewanella sediminis HAW-EB3 | Ssed_0094 | -96 | 4.5 | AAATATTACCTCGATCACATAA |
| Shewanella woodyi ATCC 51908 | Swoo_0057 | -157 | 4.2 | AAATATGATGTTTTGCACTTTA |
| -96 | 4.4 | AAATATTACCTCGATCACAATA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0057 | -157 | 4.2 | AAATATGATGTTTTGCACTTTA |
| -96 | 4.4 | AAATATTACCTCGATCACAATA | ||
|
Position: -165
Score: 3.4 Sequence: AAACATAATGTGTATTGCAAAA
Locus tag: ATW7_08866
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| ATW7_08866 | -165 | 3.4 | AAACATAATGTGTATTGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadE2 | ||||
| Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) | ||||
| Shewanella oneidensis MR-1 | SO2536 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1791 | -72 | 4.6 | AATTGTGATCGCCATCAATAAA |
| Shewanella sp W3-18-1 | Sputw3181_2234 | -72 | 4.6 | AATTGTGATCGCCATCAATAAA |
| Shewanella sp ANA-3 | Shewana3_2323 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella sp MR-4 | Shewmr4_2146 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella sp MR-7 | Shewmr7_2223 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella baltica OS155 | Sbal_2306 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella denitrificans OS217 | Sden_1764 | -66 | 3.8 | ACTTGTGAATAGGATCATCATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1869 | -67 | 3.8 | TCTTGTGAATGAGATCAATAAT |
| Shewanella amazonensis SB2B | Sama_1870 | -64 | 4.3 | ACTTGTGATCAGGATCGCTTAT |
| Shewanella loihica PV-4 | Shew_2108 | -71 | 4.9 | AATTGTGATTATGGTCATATAA |
| Shewanella pealeana ATCC 700345 | Spea_2393 | -70 | 4.5 | AATTGTGAGATAGAACTCAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1890 | -70 | 4.3 | AATTGTGAGATAAACCTCAAAA |
| Shewanella piezotolerans WP3 | swp_2312 | -97 | 3.5 | AATTGTGACGTAGACCCGCAAA |
| Shewanella sediminis HAW-EB3 | Ssed_1999 | -71 | 4.5 | AATTGTGATTATGATCAATAAA |
| Shewanella woodyi ATCC 51908 | Swoo_2604 | -73 | 4.8 | AATTGTGATATCGATCAATATA |
|
Position: -218
Score: 4.2 Sequence: AAGTTTGATTGATGTCATAATA
Locus tag: ATW7_08374
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| ATW7_08374 | -218 | 4.2 | AAGTTTGATTGATGTCATAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccoN | ||||
| Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN | ||||
| Shewanella oneidensis MR-1 | SO2364 | -173 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| -125 | 4.1 | AAATGTGAAGGATAACGCATTG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1959 | -171 | 4.2 | TTTTTTGACATTGCTCAAGTAT |
| Shewanella sp W3-18-1 | Sputw3181_2046 | -171 | 4.2 | TTTTTTGACATTGCTCAAGTAT |
| Shewanella sp ANA-3 | Shewana3_2107 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella sp MR-4 | Shewmr4_2006 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella sp MR-7 | Shewmr7_1969 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella baltica OS155 | Sbal_2201 | -173 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella baltica OS155 | Sbal_4487 | -173 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella denitrificans OS217 | Sden_1851 | -182 | 4.7 | TTTTTTGATGTAGCTCAAGTAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2010 | -186 | 4.4 | TTTTTTGACTTAGCTCAAGTAT |
| Shewanella amazonensis SB2B | Sama_1791 | -180 | 4.3 | TTTTTTGACACAGCTCAAGTAT |
| Shewanella loihica PV-4 | Shew_1985 | -178 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella pealeana ATCC 700345 | Spea_2214 | -219 | 4.1 | TACCTTGATCTAGATCAACTTA |
| -176 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2197 | -221 | 4.5 | AGATTTGATCTAGATCAACTTT |
| -178 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Shewanella piezotolerans WP3 | swp_2572 | -221 | 4.3 | TAGCTTGATCTAGATCAACTTT |
| -178 | 4.4 | TTTTTTGACATAGCTCAAGTAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2211 | -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT |
| Shewanella woodyi ATCC 51908 | Swoo_2425 | -220 | 4.3 | TAGCTTGATCTAGATCAACTTT |
| -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT | ||
|
Position: 24
Score: 4 Sequence: AAACGTGATGGTGTACAAGATT
Locus tag: ATW7_13348
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| ATW7_13348 | 24 | 4 | AAACGTGATGGTGTACAAGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1927.1 | ||||
| Ortholog function: Succinate dehydrogenase hydrophobic membrane anchor protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2272 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella sp W3-18-1 | Sputw3181_1736 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella baltica OS155 | Sbal_2518 | -66 | 3.8 | TGCCGTGATTCACATCCCAGTT |
| Shewanella denitrificans OS217 | Sden_2186 | -274 | 3.7 | TGGATTGATGCAAATTACAAAA |
| -186 | 3.8 | AAGGGCGACAAACATCACAATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2346 | -74 | 4.1 | ACGTGTGATGTAACTTACGTTA |
| -19 | 3.7 | AAGTTTGAAAGGAATAACAATG | ||
| Shewanella amazonensis SB2B | Sama_1424 | -80 | 3.7 | TTTTGTGACGACTGTCGCCGTG |
| Shewanella pealeana ATCC 700345 | Spea_1785 | -86 | 4.4 | AACCGTGATCTGGATCACTGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2492 | -86 | 4.9 | ATCTGTGATCTGGATCACCGAT |
| Shewanella piezotolerans WP3 | swp_2953 | -20 | 4.6 | AACTGTGACCTAGTTCACGGAT |
| Shewanella sediminis HAW-EB3 | Ssed_2817 | -86 | 4.2 | GATCGTGACCTGTGTCACAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_1834 | -87 | 4.8 | ATTTGTGATCTAAATCACGCCT |
|
Position: -35
Score: 3.7 Sequence: AAATGTGAATTCACTAATTTAA
Locus tag: ATW7_17609
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| ATW7_17609 | -35 | 3.7 | AAATGTGAATTCACTAATTTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: asnC | ||||
| Ortholog function: regulatory protein AsnC | ||||
| Shewanella sp ANA-3 | Shewana3_0798 | -156 | 4.2 | AAAGGTGACGAGTATAACAAAA |
| Shewanella sp MR-4 | Shewmr4_3140 | -156 | 4.2 | AAAGGTGACGAGTATAACAAAA |
| Shewanella sp MR-7 | Shewmr7_0826 | -156 | 4.2 | AAAGGTGACGAGTATAACAAAA |
| Shewanella denitrificans OS217 | Sden_3049 | -175 | 4 | TAATGTGATTGGTATAAGAACA |
| Shewanella pealeana ATCC 700345 | Spea_0737 | -161 | 4.3 | TATCGATATCTGCCTCACATAT |
| -7 | 3.8 | ATTTATTATGGAAGTCCCATTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0790 | -248 | 3.8 | ATTTATAATGATAATCACAACT |
| Shewanella piezotolerans WP3 | swp_4340 | -322 | 3.9 | TAATGCAATTGGTATTACAATA |
| Shewanella woodyi ATCC 51908 | Swoo_0916 | -67 | 3.7 | TATTTTTACTTGCCTCAACTAA |