Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Alteromonadales bacterium TW-7

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Alteromonadales bacterium TW-7
Orthologous TF(s) No orthologous TFs found
Regulated genes 58
Built upon 2713 sites [see more]
Predicted regulatory interactions in Alteromonadales bacterium TW-7
Locus tag Position Score Sequence
Position: -118
Score: 3.9
Sequence: ACACATGATTTAAATCACCAAA
Locus tag: ATW7_04397
ATW7_04397 -118 3.9 ACACATGATTTAAATCACCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-1
Ortholog function: ribosomal subunit interface protein
Shewanella oneidensis MR-1 SO3403 -142 4.7 TTCTTTGATAGGTCTCACATTT
Shewanella putrefaciens CN-32 Sputcn32_2725 -145 4.9 TTCTTTGATGTAACTCACATTT
Shewanella sp W3-18-1 Sputw3181_1287 -145 4.9 TTCTTTGATGTAACTCACATTT
Shewanella sp ANA-3 Shewana3_1151 -142 4.6 TTCTTTGATAAGTCTCACATTT
Shewanella sp MR-4 Shewmr4_1150 -142 4.6 TTCTTTGATAAATCTCACATTT
Shewanella sp MR-7 Shewmr7_1221 -142 5 TTTTTTGATAAATCTCACATTT
Shewanella baltica OS155 Sbal_1239 -222 4.2 TTTTGTGATTGATTTATTATTA
-144 4.3 CTTCTTGATGGCGGTCACATTT
Shewanella halifaxensis HAW-EB4 Shal_1258 -319 3.9 AAGAGTGATAAAAATCAAGCTA
-230 3.8 TATCCTGATGAATGCCACAATT
Shewanella piezotolerans WP3 swp_3408 -177 4.1 TGATGTGATAAAAAGCACTCAT
Position: -90
Score: 3.8
Sequence: TATTGTTAATAAAAACACATTG
Locus tag: ATW7_15529
ATW7_15529 -90 3.8 TATTGTTAATAAAAACACATTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4743
Ortholog function: ferrichrome-iron receptor
Shewanella oneidensis MR-1 SO4743 -164 4.9 AATTTTGATCTGTATCACGCAA
Shewanella putrefaciens CN-32 Sputcn32_3953 -116 4.7 TAATTTGATCGGTATCACACTC
Shewanella sp W3-18-1 Sputw3181_4050 -116 4.7 TAATTTGATCGGTATCACACTC
Shewanella sp MR-4 Shewmr4_3922 -116 4.3 AAACTTGATCTAAGTCACGCTA
Shewanella sp MR-7 Shewmr7_4014 -116 4.3 AAACTTGATCTAAGTCACGCTA
Shewanella frigidimarina NCIMB 400 Sfri_4042 -116 4.7 ATTTTTGATATATATCACAGTC
Shewanella halifaxensis HAW-EB4 Shal_4287 -46 3.8 TATTGCGACTCAATTAATACAT
Shewanella piezotolerans WP3 swp_5150 -117 4.3 TGTTGTGCGCGAGTTCACATTG
Shewanella woodyi ATCC 51908 Swoo_4894 -91 3.8 CTTTTTGATCTTTATCTAGTTT
Position: -76
Score: 3.7
Sequence: TTTGTTGATTTGCTTCATCATT
Locus tag: ATW7_02127
ATW7_02127 -76 3.7 TTTGTTGATTTGCTTCATCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3682
Ortholog function: hypothetical protein
Shewanella oneidensis MR-1 SO3682 -109 3.8 TTGCGTGATTTTGTGCAAGCAT
Shewanella putrefaciens CN-32 Sputcn32_2981 -76 3.8 ATTTTTGAGCAAGATCACGGCT
Shewanella sp W3-18-1 Sputw3181_0966 -76 3.8 ATTTTTGAGCAAGATCACGGCT
Shewanella sp MR-4 Shewmr4_0873 -166 3.7 TGACGTGATTTGTGGCGTATAA
Shewanella sp MR-7 Shewmr7_3149 -166 3.7 TGACGTGATTTGTGGCGTATAA
Shewanella baltica OS155 Sbal_3331 -76 3.7 ATTTTTGAGCAATATCACGGCT
Shewanella amazonensis SB2B Sama_2854 -78 4 AAACTTGATCTGGATCACGAGT
Shewanella loihica PV-4 Shew_3102 -84 4.2 AAATGTGATCTGGATCAAGTGG
Shewanella pealeana ATCC 700345 Spea_3356 -102 4.7 AATTGTGAGCTAGATCAAACTC
Shewanella halifaxensis HAW-EB4 Shal_3428 -90 4.8 AATTGTGACTGAGATCAAATTC
Shewanella piezotolerans WP3 swp_1054 -79 4.3 TTTTGTGAGCAAGATCAACTTC
Shewanella sediminis HAW-EB3 Ssed_3715 -111 4.2 CAGTGTGATCTCGATCAACTTC
Position: -157
Score: 3.8
Sequence: TACTGCTATTGTGATCACCTTT
Position: -151
Score: 4.6
Sequence: TATTGTGATCACCTTTACGTTT
Locus tag: ATW7_17763
ATW7_17763 -157 3.8 TACTGCTATTGTGATCACCTTT
-151 4.6 TATTGTGATCACCTTTACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yceI
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_1651 -70 3.8 TAAATGGATGTAAATCACGATT
Shewanella sp W3-18-1 Sputw3181_2375 -70 3.8 TAAATGGATGTAAATCACGATT
Shewanella sp ANA-3 Shewana3_1628 -102 4.6 TTAGGTGATCTTTGTCACAGAT
Shewanella sp MR-4 Shewmr4_1561 -103 4.8 TTAGGTGATCTTTGTCACAAAT
Shewanella sp MR-7 Shewmr7_1636 -103 4.8 TTAGGTGATCTTTGTCACAAAT
Shewanella baltica OS155 Sbal_1772 -105 4.7 TTAGGTGATGTGGGTCACGTTT
Shewanella pealeana ATCC 700345 Spea_2476 -166 3.8 TTACGTGCTGAATTGCAAAATT
-69 3.8 AATTGTTACGCATCTTACGCTA
Shewanella piezotolerans WP3 swp_3020 -42 3.8 TACATTGATATCTATCACTATT
Position: -45
Score: 3.8
Sequence: AAATTTGGTTTACTTAACGTTA
Locus tag: ATW7_17773
ATW7_17773 -45 3.8 AAATTTGGTTTACTTAACGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: engB
Ortholog function: GTP-binding protein EngB
Shewanella oneidensis MR-1 SO4667 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella putrefaciens CN-32 Sputcn32_3907 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp W3-18-1 Sputw3181_0044 -96 4.6 TAATGTGATCGGAGTAATATTT
Shewanella sp ANA-3 Shewana3_4110 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-4 Shewmr4_3906 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella sp MR-7 Shewmr7_3998 -96 4.7 TAATGTGATCGGGGTAATATTT
Shewanella baltica OS155 Sbal_0052 -95 4.6 TAATGTGATCGGAGTAATATTT
Shewanella denitrificans OS217 Sden_3621 -182 3.8 TATTATGCTCGAAATAATATTT
Shewanella frigidimarina NCIMB 400 Sfri_3944 -104 4.7 TAATGTGATCAGGCTAATATTT
Shewanella amazonensis SB2B Sama_0092 -96 4.1 ATATGTGATCGGGGCAATATTT
Shewanella loihica PV-4 Shew_3715 -95 4.7 TTATGTGATCGGGGTAATATTT
Shewanella pealeana ATCC 700345 Spea_0101 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella halifaxensis HAW-EB4 Shal_4221 -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella piezotolerans WP3 swp_5074a -96 4.7 TTATGTGATCGGGGTAATATTT
Shewanella sediminis HAW-EB3 Ssed_0095 -95 4.7 TTATGTGATCGAGGTAATATTT
Shewanella woodyi ATCC 51908 Swoo_0058 -110 4.8 TATTGTGATCGAGGTAATATTT
Position: -257
Score: 3.7
Sequence: TAACGTTAAGTAAACCAAATTT
Locus tag: ATW7_17778
ATW7_17778 -257 3.7 TAACGTTAAGTAAACCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytcB
Ortholog function: Cytochrome c4
Shewanella oneidensis MR-1 SO4666 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella oneidensis MR-1 SO4666 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella putrefaciens CN-32 Sputcn32_3908 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella putrefaciens CN-32 Sputcn32_3908 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1 Sputw3181_0043 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp W3-18-1 Sputw3181_0043 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella sp ANA-3 Shewana3_4111 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp ANA-3 Shewana3_4111 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-4 Shewmr4_3907 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-4 Shewmr4_3907 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-7 Shewmr7_3999 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella sp MR-7 Shewmr7_3999 -95 4.4 AAATATTACCCCGATCACATTA
Shewanella baltica OS155 Sbal_0051 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella baltica OS155 Sbal_0051 -95 4.3 AAATATTACTCCGATCACATTA
Shewanella denitrificans OS217 Sden_3622 -94 3.7 AAATATTATTTCGAGCATAATA
Shewanella denitrificans OS217 Sden_3622 -94 3.7 AAATATTATTTCGAGCATAATA
Shewanella frigidimarina NCIMB 400 Sfri_3945 -181 4.3 AAATATTAGCCTGATCACATTA
Shewanella frigidimarina NCIMB 400 Sfri_3945 -181 4.3 AAATATTAGCCTGATCACATTA
Shewanella amazonensis SB2B Sama_0091 -95 3.7 AAATATTGCCCCGATCACATAT
Shewanella loihica PV-4 Shew_3716 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella loihica PV-4 Shew_3716 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345 Spea_0100 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella pealeana ATCC 700345 Spea_0100 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_4222 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_4222 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3 swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella piezotolerans WP3 swp_5075 -95 4.4 AAATATTACCCCGATCACATAA
Shewanella sediminis HAW-EB3 Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Shewanella sediminis HAW-EB3 Ssed_0094 -96 4.5 AAATATTACCTCGATCACATAA
Shewanella woodyi ATCC 51908 Swoo_0057 -157 4.2 AAATATGATGTTTTGCACTTTA
-96 4.4 AAATATTACCTCGATCACAATA
Shewanella woodyi ATCC 51908 Swoo_0057 -157 4.2 AAATATGATGTTTTGCACTTTA
-96 4.4 AAATATTACCTCGATCACAATA
Position: -165
Score: 3.4
Sequence: AAACATAATGTGTATTGCAAAA
Locus tag: ATW7_08866
ATW7_08866 -165 3.4 AAACATAATGTGTATTGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella oneidensis MR-1 SO2536 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella putrefaciens CN-32 Sputcn32_1791 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp W3-18-1 Sputw3181_2234 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp ANA-3 Shewana3_2323 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-4 Shewmr4_2146 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-7 Shewmr7_2223 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella baltica OS155 Sbal_2306 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella denitrificans OS217 Sden_1764 -66 3.8 ACTTGTGAATAGGATCATCATA
Shewanella frigidimarina NCIMB 400 Sfri_1869 -67 3.8 TCTTGTGAATGAGATCAATAAT
Shewanella amazonensis SB2B Sama_1870 -64 4.3 ACTTGTGATCAGGATCGCTTAT
Shewanella loihica PV-4 Shew_2108 -71 4.9 AATTGTGATTATGGTCATATAA
Shewanella pealeana ATCC 700345 Spea_2393 -70 4.5 AATTGTGAGATAGAACTCAAAA
Shewanella halifaxensis HAW-EB4 Shal_1890 -70 4.3 AATTGTGAGATAAACCTCAAAA
Shewanella piezotolerans WP3 swp_2312 -97 3.5 AATTGTGACGTAGACCCGCAAA
Shewanella sediminis HAW-EB3 Ssed_1999 -71 4.5 AATTGTGATTATGATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_2604 -73 4.8 AATTGTGATATCGATCAATATA
Position: -218
Score: 4.2
Sequence: AAGTTTGATTGATGTCATAATA
Locus tag: ATW7_08374
ATW7_08374 -218 4.2 AAGTTTGATTGATGTCATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shewanella oneidensis MR-1 SO2364 -173 4.3 TTTTTTGACATGGCTCAAGTAT
-125 4.1 AAATGTGAAGGATAACGCATTG
Shewanella putrefaciens CN-32 Sputcn32_1959 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp W3-18-1 Sputw3181_2046 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp ANA-3 Shewana3_2107 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-4 Shewmr4_2006 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-7 Shewmr7_1969 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella baltica OS155 Sbal_2201 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella baltica OS155 Sbal_4487 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella denitrificans OS217 Sden_1851 -182 4.7 TTTTTTGATGTAGCTCAAGTAT
Shewanella frigidimarina NCIMB 400 Sfri_2010 -186 4.4 TTTTTTGACTTAGCTCAAGTAT
Shewanella amazonensis SB2B Sama_1791 -180 4.3 TTTTTTGACACAGCTCAAGTAT
Shewanella loihica PV-4 Shew_1985 -178 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella pealeana ATCC 700345 Spea_2214 -219 4.1 TACCTTGATCTAGATCAACTTA
-176 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella halifaxensis HAW-EB4 Shal_2197 -221 4.5 AGATTTGATCTAGATCAACTTT
-178 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella piezotolerans WP3 swp_2572 -221 4.3 TAGCTTGATCTAGATCAACTTT
-178 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella sediminis HAW-EB3 Ssed_2211 -177 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_2425 -220 4.3 TAGCTTGATCTAGATCAACTTT
-177 4.4 TTTTTTGACATAGCTCAAGTAT
Position: 24
Score: 4
Sequence: AAACGTGATGGTGTACAAGATT
Locus tag: ATW7_13348
ATW7_13348 24 4 AAACGTGATGGTGTACAAGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1927.1
Ortholog function: Succinate dehydrogenase hydrophobic membrane anchor protein
Shewanella putrefaciens CN-32 Sputcn32_2272 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1736 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2518 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2186 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2346 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1424 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1785 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2492 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2953 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2817 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1834 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -35
Score: 3.7
Sequence: AAATGTGAATTCACTAATTTAA
Locus tag: ATW7_17609
ATW7_17609 -35 3.7 AAATGTGAATTCACTAATTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: asnC
Ortholog function: regulatory protein AsnC
Shewanella sp ANA-3 Shewana3_0798 -156 4.2 AAAGGTGACGAGTATAACAAAA
Shewanella sp MR-4 Shewmr4_3140 -156 4.2 AAAGGTGACGAGTATAACAAAA
Shewanella sp MR-7 Shewmr7_0826 -156 4.2 AAAGGTGACGAGTATAACAAAA
Shewanella denitrificans OS217 Sden_3049 -175 4 TAATGTGATTGGTATAAGAACA
Shewanella pealeana ATCC 700345 Spea_0737 -161 4.3 TATCGATATCTGCCTCACATAT
-7 3.8 ATTTATTATGGAAGTCCCATTT
Shewanella halifaxensis HAW-EB4 Shal_0790 -248 3.8 ATTTATAATGATAATCACAACT
Shewanella piezotolerans WP3 swp_4340 -322 3.9 TAATGCAATTGGTATTACAATA
Shewanella woodyi ATCC 51908 Swoo_0916 -67 3.7 TATTTTTACTTGCCTCAACTAA
© 2009-2020 RegPrecise