Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of LexA regulog to Alteromonadales bacterium TW-7

Reference regulog properties
Source regulog: LexA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Alteromonadales bacterium TW-7
Orthologous TF(s) ATW7_16997
Regulated genes 6
Built upon 192 sites [see more]
Predicted regulatory interactions in Alteromonadales bacterium TW-7
Locus tag Position Score Sequence
Position: -47
Score: 5
Sequence: AACTGTATATACTCACAGTT
Position: -22
Score: 4.9
Sequence: TACTGTATGGAAAACCAGTT
Locus tag: ATW7_16997
ATW7_16997 -47 5 AACTGTATATACTCACAGTT
-22 4.9 TACTGTATGGAAAACCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Shewanella oneidensis MR-1 SO_4603 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella putrefaciens CN-32 Sputcn32_3780 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp W3-18-1 Sputw3181_0135 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp ANA-3 Shewana3_3989 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-4 Shewmr4_3789 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-7 Shewmr7_3862 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella baltica OS155 Sbal_0156 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella denitrificans OS217 Sden_3515 -45 5.1 TACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella frigidimarina NCIMB 400 Sfri_0260 -45 5 CACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella amazonensis SB2B Sama_3481 -45 5.6 TACTGTATATACTGACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella loihica PV-4 Shew_0127 -45 4.9 TACTGTATATACTGACAGGT
-26 4.8 TACTGTATGGAAAGACAGGA
Shewanella pealeana ATCC 700345 Spea_3997 -45 5.2 TACTGTATATACTAACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella halifaxensis HAW-EB4 Shal_0260 -45 4.9 TACTGTATATACTGACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella piezotolerans WP3 swp_4821 -45 5.2 TACTGTATATACTAACAGGT
-26 5 TACTGTATAGAAAAACAGGT
Shewanella sediminis HAW-EB3 Ssed_0200 -45 5.6 TACTGTATATACTAACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Shewanella woodyi ATCC 51908 Swoo_0180 -45 5.3 TACTGTATATACTGACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Position: -32
Score: 5.5
Sequence: TACTGTTTATATAACCAGTT
Locus tag: ATW7_10960
ATW7_10960 -32 5.5 TACTGTTTATATAACCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: topB
Ortholog function: DNA topoisomerase III (EC 5.99.1.2)
Shewanella oneidensis MR-1 SO_3061 -32 5.7 TACTGTAATTATATCCAGTA
Shewanella putrefaciens CN-32 Sputcn32_2435 -32 5.6 TACTGTAATTATATCCAGTG
Shewanella sp W3-18-1 Sputw3181_1573 -32 5.6 TACTGTAATTATATCCAGTG
Shewanella sp ANA-3 Shewana3_1486 -32 5.4 CACTGTAATTATATCCAGTG
Shewanella sp MR-4 Shewmr4_1433 -32 5.6 CACTGTAATTATATCCAGTA
Shewanella sp MR-7 Shewmr7_1498 30 5.6 CACTGTAATTATATCCAGTA
Shewanella baltica OS155 Sbal_2736 -32 5.6 TACTGTAATTATATCCAGTG
Shewanella denitrificans OS217 Sden_2400 -41 5.6 CACTGTAATTACATACAGTG
Shewanella frigidimarina NCIMB 400 Sfri_1401 -67 5.8 TACTGTAAATTTATACAGTT
Shewanella amazonensis SB2B Sama_2145 29 5.3 TACTGTAAATTCATCCAGTG
Shewanella loihica PV-4 Shew_2299 -32 5.9 TACTGTTAATTTATACAGTA
Shewanella pealeana ATCC 700345 Spea_1625 -36 5.9 TACTGTTAATTTATACAGTA
Shewanella halifaxensis HAW-EB4 Shal_2636 -36 5.9 TACTGTTAATTTATACAGTA
Shewanella piezotolerans WP3 swp_3111 -36 5.8 TACTGTTAATTTATACAGTG
Shewanella sediminis HAW-EB3 Ssed_1658 -38 5.4 TACTGGTAATTTATACAGTG
Shewanella woodyi ATCC 51908 Swoo_2976 -35 5.4 TACTGGTAATTTATACAGTG
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