Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Shigella boydii BS512

Type Regulator Effector Pathway Genes Sites
TF AbgR p-aminobenzoyl-glutamate p-aminobenzoyl-glutamate utilization 1 2
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AllR Allantoin Allantoin utilization 3 3
TF AraC Arabinose Arabinose utilization 2 3
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 15 36
TF AscG Cellobiose-6-phosphate; Beta-glucoside-6-phosphate Beta-glucosides utilization; Cellobiose utilization 1 1
TF BirA Biotin Biotin biosynthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 230 572
TF CueR Copper ion, (Cu+) Copper resistance 1 1
TF DeoR Deoxyribonucleoside utilization 4 5
TF ExuR Galacturonate Galacturonate utilization 5 8
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 9 13
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 90 166
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 23 27
TF Fur Iron ion, (Fe2+) Iron homeostasis 32 114
TF GalR/GalS Galactose Galactose utilization 5 6
TF GcvA Glycine Glycine metabolism 2 2
TF GlpR Glycerol 3-phosphate Glycerol utilization 5 7
TF GntR Gluconate Gluconate utilization 2 4
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 2 2
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 3
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 7 10
TF LeuO Guanosine 3',5'-bis(diphosphate) 2 6
TF LexA DNA damage SOS response 22 26
TF LldR L-lactate Lactate utilization 1 1
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MalI Maltose utilization 2 3
TF MetR Homocysteine Methionine biosynthesis 5 5
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 4 4
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 3 3
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF NadR NAD NAD biosynthesis 3 3
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 6 8
TF NanR N-acetylneuraminic acid Sialic acid utilization 1 1
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 15 16
TF NhaR Potassium ion Osmotic stress response 1 2
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 1 1
TF NorR Nitric oxide Nitrosative stress response 2 2
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 2 6
TF NsrR Nitric oxide Nitrosative stress response 7 13
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 9 16
TF PdhR Pyruvate Pyruvate metabolism 4 5
TF PurR Hypoxanthine; Guanine Purine metabolism 22 27
TF QorR Energy metabolism 2 2
TF RbsR Ribose Ribose utilization 1 1
TF RhaS Rhamnose Rhamnose utilization 1 1
TF RutR Uracil Pyrimidine utilization 3 3
TF SorC Sorbose Sorbose utilization 1 1
TF SoxR Paraquat Superoxide stress response 2 2
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF TrpR Tryptophan Tryptophan biosynthesis 4 4
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 9 15
TF UlaR Ascorbate-6-phosphate Ascorbate utilization 1 1
TF UxuR Glucuronate Glucuronate utilization 6 11
TF YiaJ Ascorbate-6-phosphate L-lyxose utilization 2 2
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 3