Propagation of TyrR regulog to Shigella boydii BS512
| Source regulog: | TyrR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | TyrR |
| Regulation mode: | activator (repressor) |
| Biological process: | Aromatic amino acid metabolism |
| Effector: | Tyrosine; Phenylalanine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shigella boydii BS512 |
| Orthologous TF(s) | SbBS512_E4344, SbBS512_E1556 |
| Regulated genes | 9 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -182
Score: 4.5 Sequence: ACGTAAATCACACTTTACAG
Locus tag: SbBS512_E0042
|
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| SbBS512_E0042 | -182 | 4.5 | ACGTAAATCACACTTTACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: folA | ||||
| Ortholog function: Dihydrofolate reductase (EC 1.5.1.3) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0048 | -182 | 4.5 | ACGTAAATCACACTTTACAG |
|
Position: -92
Score: 5 Sequence: ATGTAAACAAATTAATACAA
Locus tag: SbBS512_E0105
|
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| SbBS512_E0105 | -92 | 5 | ATGTAAACAAATTAATACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroP | ||||
| Ortholog function: Aromatic amino acid transport protein AroP | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0112 | -89 | 5 | ATGTAAACAAATTAATACAA |
| Salmonella typhimurium LT2 | STM0150 | -108 | 5.2 | TTGTAAATAAATCAATACAA |
| Citrobacter koseri ATCC BAA-895 | CKO_03262 | -87 | 5 | GcGTAAAcaTAttaaTACAa |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00116 | -192 | 4.8 | CCGTAAACAAAACAATACAG |
| Enterobacter sp. 638 | Ent638_0658 | -87 | 4.4 | CCGTAACGAAATAAATACAT |
| -64 | 4.5 | ATGGAATTTCATAATTACAC | ||
| Erwinia amylovora ATCC 49946 | EAM_0745 | -187 | 4.4 | GCGTAAAGTTTCCAATACAC |
| Yersinia pestis KIM | y0765 | -234 | 5.3 | GTGTAATTAAATGATTACAT |
| Serratia proteamaculans 568 | Spro_4013 | -80 | 4.4 | CCGTAAATAAAACAAAACAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3791 | -93 | 5.4 | CCGTAAAAATAAAATTACAC |
| Edwardsiella tarda EIB202 | ETAE_0657 | -91 | 5.4 | ATGTAAAAATAAAATTACGA |
|
Position: -182
Score: 5.6 Sequence: ATGTAATTTATTATTTACAC
Position: -106
Score: 5 Sequence: GTGGAATTTTTTCTTTACAA
Locus tag: SbBS512_E0305
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| SbBS512_E0305 | -182 | 5.6 | ATGTAATTTATTATTTACAC | |
| -106 | 5 | GTGGAATTTTTTCTTTACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroL | ||||
| Ortholog function: Shikimate kinase III (EC 2.7.1.71) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0388 | -182 | 5.6 | ATGTAATTTATTATTTACAC |
| -106 | 5 | GTGGAATTTTTTCTTTACAA | ||
| Salmonella typhimurium LT2 | STM0388 | -181 | 5.4 | ATGTAATGAAAAATTTACAG |
| -107 | 5.8 | GTGTAAATTATTATTTACAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02783 | -238 | 5.4 | ATGTAATGTTATTTTTACAC |
| -163 | 5 | GTGGAATGATTTATTTACAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00332 | -165 | 4.6 | ATGCAATGATAAGTTTACAT |
| -101 | 5.3 | GTGTAATTTTTTCTTTACGT | ||
| Enterobacter sp. 638 | Ent638_0859 | -182 | 4.5 | ATGCAATGATTTCTTTACAG |
| -108 | 4.9 | CTGTAATCCAATTTTTACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_0932 | -126 | 4.5 | CTGTAAATAAAACGTTACTG |
| Yersinia pestis KIM | y0972 | -174 | 5 | GTGTATTATTAATTTTACGT |
| Serratia proteamaculans 568 | Spro_1018 | -122 | 4.9 | TCGTAAATATTGAAATACAG |
| Proteus mirabilis HI4320 | PMI0371 | -57 | 5.5 | TTGTAAATTTTAGATTACAC |
|
Position: -110
Score: 5.6 Sequence: TTGTACATTTATATTTACAC
Locus tag: SbBS512_E1034
|
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| SbBS512_E1034 | -110 | 5.6 | TTGTACATTTATATTTACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tyrP | ||||
| Ortholog function: Tyrosine-specific transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1907 | -110 | 5.6 | TTGTACATTTATATTTACAC |
| Citrobacter koseri ATCC BAA-895 | CKO_01040 | -83 | 4.6 | TCGTAAACAATGGTATACAC |
|
Position: -89
Score: 3.7 Sequence: GTGTCAATGATTGTTGACAG
Locus tag: SbBS512_E1556
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| SbBS512_E1556 | -89 | 3.7 | GTGTCAATGATTGTTGACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tyrR | ||||
| Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1323 | -89 | 3.7 | GTGTCAATGATTGTTGACAG |
| Salmonella typhimurium LT2 | STM1683 | -89 | 4.2 | CTGTCAATATTTGTTGACAG |
| Citrobacter koseri ATCC BAA-895 | CKO_01393 | -90 | 4.2 | CTGTCAATAATTGTTGACAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01305 | -90 | 4.2 | CTGTCAATAATTGTTGACAG |
| Enterobacter sp. 638 | Ent638_2152 | -86 | 3.7 | CTGTCAATATCTGTTGACAG |
| Erwinia amylovora ATCC 49946 | EAM_1834 | -96 | 3.9 | CTGTCAACTTTTCATGACAG |
| Serratia proteamaculans 568 | Spro_2617 | -98 | 3.6 | CTGTCAACTTTTGCTGACAG |
| Proteus mirabilis HI4320 | PMI1369 | -96 | 3.7 | GTGTCAACTTTTGCTGACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2580 | -178 | 3.7 | TTTTATAATCAATCTTACAA |
|
Position: -75
Score: 5 Sequence: CCGTAAATTTTTATTGACAG
Locus tag: SbBS512_E2389
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| SbBS512_E2389 | -75 | 5 | CCGTAAATTTTTATTGACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompF | ||||
| Ortholog function: outer membrane porin F | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0929 | -75 | 5 | CCGTAAATTTTTATTGACAG |
| Citrobacter koseri ATCC BAA-895 | CKO_02137 | -76 | 5 | ccGTAAATTTttATTgACAg |
|
Position: -163
Score: 5.3 Sequence: GTGTAAATTTATTTGTACGA
Locus tag: SbBS512_E2988
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| SbBS512_E2988 | -163 | 5.3 | GTGTAAATTTATTTGTACGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aroF | ||||
| Ortholog function: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (EC 2.5.1.54) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2601 | -165 | 5.4 | GTGTAAATTTATCTATACAG |
| -113 | 5.4 | GTGTAAATAAAAATGTACGA | ||
| -90 | 4 | ATGGATTGAAAACTTTACTT | ||
| Salmonella typhimurium LT2 | STM2670 | -164 | 4.5 | GTGTAAAGTTTTTGATACGA |
| -113 | 5.3 | GTGTAAAGTTTATTTTACGT | ||
| -90 | 4 | ATGGATTGAAATCTTTACTT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03921 | -165 | 5.3 | ATGTAAATTTTTATGTACGA |
| -112 | 5.4 | ATGTAAAGTAAAATTTACGG | ||
| -89 | 4 | GTGGATTGAAATCTTTACCG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02923 | -166 | 4.9 | GTGTAAATATTGTTATACGC |
| -113 | 5.7 | GTGTAAATTAAAATTTACGG | ||
| -90 | 4 | ATGGATTGAATTCTTTACTT | ||
| Enterobacter sp. 638 | Ent638_3080 | -165 | 5.4 | CTGTAATTTTATGTTTACGA |
| -112 | 5.7 | GTGTAAATTAAAATTTACGG | ||
| -89 | 4 | TTGGATTGAAATCTTTACTG | ||
| Erwinia amylovora ATCC 49946 | EAM_2621 | -202 | 5.3 | CTGTAATCTTTTATTTACGC |
| -106 | 4.1 | CTGGTAATTAATGTGTACAC | ||
| -73 | 4 | ATGTACTCATTATGGTACAG | ||
| Yersinia pestis KIM | y0903 | -114 | 5.2 | TAGTAATTATTTATTTACAA |
| -92 | 4.5 | ATGGATTGAAAACTTTACAT | ||
| Serratia proteamaculans 568 | Spro_0879 | -122 | 5.1 | TGGTAATTTTTTATTTACAG |
| -99 | 4.6 | TCGGATTTAAAACTTTACAT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3352 | -156 | 5.2 | TGGTAATTTTTTATTTACAC |
| -133 | 4.6 | GTGGATTTAAATCTTTACGG | ||
| Edwardsiella tarda EIB202 | ETAE_2837 | -129 | 4.6 | GTGTAAAGATGAATGTACGA |
| -117 | 4.6 | ATGTACGATATTGTTTACAT | ||
| -95 | 4 | ATGGATTGAAAAGTTTACTG | ||
| Proteus mirabilis HI4320 | PMI0387 | -244 | 5.6 | GTGTAAAATTAAAATTACAG |
| -127 | 5.2 | ATGTAAACATATGATTACGA | ||
| -85 | 4.5 | ATGGATTGATTTCTTTACAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1262 | -140 | 5.5 | TTGTAAACAATAATTTACAG |
| -98 | 4.3 | TTGGATTGTATTCTTTACGA | ||
|
Position: -129
Score: 5.3 Sequence: CTGTAAAATAATATATACAG
Locus tag: SbBS512_E3611
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| SbBS512_E3611 | -129 | 5.3 | CTGTAAAATAATATATACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtr | ||||
| Ortholog function: Tryptophan-specific transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3161 | -129 | 5.3 | CTGTAAAATAATATATACAG |
| Salmonella typhimurium LT2 | STM3279 | -129 | 5.2 | GCGTAAAGTAAAATATACAG |
| Citrobacter koseri ATCC BAA-895 | CKO_04558 | -129 | 5.1 | CCGTAAAGTAAAATATACAG |
| Enterobacter sp. 638 | Ent638_3598 | -128 | 5.2 | GCGTAAAGTAATATATACAG |