Propagation of NarP regulog to Shigella boydii BS512
| Source regulog: | NarP - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrate; Nitrite |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shigella boydii BS512 |
| Orthologous TF(s) | SbBS512_E0748 |
| Regulated genes | 15 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -90
Score: 3.9 Sequence: TACCTCACAAAGGTTA
Locus tag: SbBS512_E0684
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| SbBS512_E0684 | -90 | 3.9 | TACCTCACAAAGGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: modA | ||||
| Ortholog function: Molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0763 | -90 | 3.9 | TACCTCACAAAGGTTA |
| Salmonella typhimurium LT2 | STM0781 | -91 | 4.2 | TAATCGTTAATGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_02372 | -90 | 4 | TAACCTCAATTGGGTA |
|
Position: -91
Score: 4 Sequence: TACATAAAATGGGGTA
Locus tag: SbBS512_E0748
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| SbBS512_E0748 | -91 | 4 | TACATAAAATGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narP | ||||
| Ortholog function: Nitrate/nitrite response regulator protein NarP, LuxR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2193 | -91 | 4 | TACATAAAATGGGGTA |
| Serratia proteamaculans 568 | Spro_3490 | -243 | 4.8 | TCCCCCTAAAGGGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1901 | -257 | 4.3 | TCACCCTTTAGAGGTA |
| Edwardsiella tarda EIB202 | ETAE_1111 | -169 | 4.1 | TTCCTCTTTTGGGTTA |
|
Position: -215
Score: 4.7 Sequence: TACCCAGAAGTGAGTA
Locus tag: SbBS512_E1406
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| SbBS512_E1406 | -215 | 4.7 | TACCCAGAAGTGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -215 | 4.7 | TACCCAGAAGTGAGTA |
| Salmonella typhimurium LT2 | STM1749 | -216 | 4.6 | TACTCAGAAGTGAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -216 | 4.6 | TACTCAGAAGTGAGTA |
| Yersinia pestis KIM | y2023 | -260 | 4 | TACCTAAGAATAGTTA |
| Serratia proteamaculans 568 | Spro_2704 | -252 | 4 | TACCCAAGAGTAGTTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -289 | 4 | CACCCACAAATAGGTA |
| Edwardsiella tarda EIB202 | ETAE_1508 | -239 | 4.4 | TACCCAAGAATGAGTA |
|
Position: -55
Score: 4.5 Sequence: TACTCCAATGTAGGTA
Locus tag: SbBS512_E1425
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| SbBS512_E1425 | -55 | 4.5 | TACTCCAATGTAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: Outer membrane protein W precursor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -55 | 4.5 | TACTCCAATGTAGGTA |
| Salmonella typhimurium LT2 | STM1732 | -55 | 4.7 | TACTTCATTGTGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -55 | 4.5 | TACTCCATTGTAGGTA |
| Yersinia pestis KIM | y2044 | -43 | 4.7 | TACTCATTTGTAGGTA |
| Serratia proteamaculans 568 | Spro_2674 | -28 | 4.5 | TACCCGTAAGTAGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -56 | 4.9 | TACCTACTTAGGGGTA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -52 | 3.7 | TCACTCAATATGGTTA |
| Proteus mirabilis HI4320 | PMI1350 | -59 | 4.9 | TACTTATTAATGGGTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -55 | 3.8 | TTCTAATATATGAGTA |
|
Position: -92
Score: 4.7 Sequence: TAACCCAAAATGGGTA
Locus tag: SbBS512_E1773
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| SbBS512_E1773 | -92 | 4.7 | TAACCCAAAATGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ynfE | ||||
| Ortholog function: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1587 | -92 | 4.7 | TAACCCAAAATGGGTA |
| Salmonella typhimurium LT2 | STM1499 | -95 | 5 | TACTCCCAAAGGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_01581 | -93 | 4.8 | TACCTATAAGGGGTTA |
| -20 | 3.8 | TAACTATAATGGAGTG | ||
| Serratia proteamaculans 568 | Spro_1687 | -143 | 4.3 | TACCCACTTCTGAGTA |
|
Position: -143
Score: 4.5 Sequence: TACCTCTCTGGCGGTA
Locus tag: SbBS512_E2458
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| SbBS512_E2458 | -143 | 4.5 | TACCTCTCTGGCGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0873 | -143 | 4.5 | TACCTCTCTGGCGGTA |
|
Position: -104
Score: 4.3 Sequence: TACCTGATAGTGGGTA
Locus tag: SbBS512_E2671
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| SbBS512_E2671 | -104 | 4.3 | TACCTGATAGTGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfbV | ||||
| Ortholog function: Predicted membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2295 | -104 | 4.3 | TACCTGATAGTGGGTA |
| Salmonella typhimurium LT2 | STM2336 | -104 | 4.3 | TACCTGATAGTGGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00500 | -105 | 4.3 | TACCTGATAGTGGGTA |
|
Position: -22
Score: 4.2 Sequence: TACTTTTCAAGGAGTA
Locus tag: SbBS512_E2830
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| SbBS512_E2830 | -22 | 4.2 | TACTTTTCAAGGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: talA | ||||
| Ortholog function: Transaldolase (EC 2.2.1.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2464 | -22 | 4.2 | TACTTTTCAAGGAGTA |
| Salmonella typhimurium LT2 | STM2473 | -22 | 4.2 | TACTTTTCAAGGAGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_00330 | -22 | 4.2 | TACTTTTCAAGGAGTA |
|
Position: -117
Score: 4.5 Sequence: TACTCATTAATGAGCA
Locus tag: SbBS512_E3167
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| SbBS512_E3167 | -117 | 4.5 | TACTCATTAATGAGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: norV | ||||
| Ortholog function: Nitric oxide reductase, flavorubredoxin (EC 1.18.1.-) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2710 | -118 | 4.6 | TACTCATTAATGGGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_04064 | -118 | 4.2 | TACCATTTTATGAGTA |
|
Position: -101
Score: 4.7 Sequence: TGCCCCTTAAGGGGTA
Locus tag: SbBS512_E3741
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| SbBS512_E3741 | -101 | 4.7 | TGCCCCTTAAGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nirB | ||||
| Ortholog function: Nitrite reductase large subunit (EC 1.7.1.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3365 | -101 | 5.1 | TACCCATTAAGGAGTA |
| Salmonella typhimurium LT2 | STM3474 | -101 | 5 | TACCCATTAAGAGGTA |
| Citrobacter koseri ATCC BAA-895 | CKO_04789 | -101 | 5.2 | TACCTCTTAAGGAGTA |
| Yersinia pestis KIM | y3945 | -100 | 4.5 | TACCACCTTAGAGGTA |
| Serratia proteamaculans 568 | Spro_4595 | -197 | 4.5 | TACTCCCGAATGGGTA |
| -101 | 4.5 | TACCACATTAGAGGTA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4079 | -100 | 4.8 | TACCCACAAAGAAGTA |
| Proteus mirabilis HI4320 | PMI1479 | -134 | 4.1 | TACTACTTTGGTAGTA |
|
Position: -31
Score: 4.6 Sequence: TACCTCGAAGGGAGCA
Locus tag: SbBS512_E4182
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| SbBS512_E4182 | -31 | 4.6 | TACCTCGAAGGGAGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase maturation | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -31 | 4.6 | TACCTCGAAGGGAGCA |
| Salmonella typhimurium LT2 | STM3872 | -30 | 4.5 | TACCTCGAAGTGAGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -30 | 4.6 | TACCTCGAAGGGAGCA |
| Serratia proteamaculans 568 | Spro_0001 | -33 | 4.6 | TACCTCCTCAGGGGTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -33 | 4.3 | TACCTCTGAAAAGGTA |
| Edwardsiella tarda EIB202 | ETAE_3526 | -156 | 4.4 | TACCTCCTGGGGGGTA |
|
Position: -101
Score: 4.7 Sequence: TACCTATAAAGGAGCA
Locus tag: SbBS512_E4686
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| SbBS512_E4686 | -101 | 4.7 | TACCTATAAAGGAGCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdA | ||||
| Ortholog function: Fumarate reductase subunit A (EC 1.3.5.4) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4154 | -101 | 4.7 | TACCTATAAAGGAGCA |
| Salmonella typhimurium LT2 | STM4343 | -100 | 4.7 | TACCCATAAAGGAGCA |
| Citrobacter koseri ATCC BAA-895 | CKO_03678 | -60 | 4.7 | TACCTATAAAGGAGCA |
|
Position: -79
Score: 3.7 Sequence: TGCTACGTAAGGGTTA
Locus tag: SbBS512_E4750
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| SbBS512_E4750 | -79 | 3.7 | TGCTACGTAAGGGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dnrN | ||||
| Ortholog function: Nitric oxide-dependent regulator DnrN | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4209 | -79 | 3.7 | TGCTACGTAAGGGTTA |
| Salmonella typhimurium LT2 | STM4399 | -78 | 3.9 | CACCCCGAAAGAGTTA |
| Citrobacter koseri ATCC BAA-895 | CKO_03623 | -78 | 3.9 | TGACCCGAAAGGGTTA |
| Yersinia pestis KIM | y0652 | -108 | 4.4 | TACCCACTTGGAGTTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3606 | -81 | 4.8 | TACCTCGTAAGCGGTA |