Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Shigella flexneri 5 str. 8401

Type Regulator Effector Pathway Genes Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AllR Allantoin Allantoin utilization 1 1
TF AraC Arabinose Arabinose utilization 2 3
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 13 33
TF AscG Cellobiose-6-phosphate; Beta-glucoside-6-phosphate Beta-glucosides utilization; Cellobiose utilization 2 3
TF BetI Choline Glycine betaine synthesis 2 2
TF BirA Biotin Biotin biosynthesis 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 261 699
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF DeoR Deoxyribonucleoside utilization 3 4
TF EbgR Beta-galactosides Galactosides utilization 2 2
TF ExuR Galacturonate Galacturonate utilization 4 5
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 10 14
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 96 190
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 22 26
TF FucR L-fuculose-1-phosphate Fucose utilization 2 3
TF Fur Iron ion, (Fe2+) Iron homeostasis 31 104
TF GalR/GalS Galactose Galactose utilization 4 4
TF GcvA Glycine Glycine metabolism 2 2
TF GlcC Glycolate Glycolate utilization 1 2
TF GlpR Glycerol 3-phosphate Glycerol utilization 5 7
TF GntR Gluconate Gluconate utilization 3 6
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 3 3
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 3
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 3
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 11 17
TF LeuO Guanosine 3',5'-bis(diphosphate) 2 8
TF LexA DNA damage SOS response 20 24
TF LldR L-lactate Lactate utilization 1 1
TF LsrR 4,5-dihydroxypentan-2,3-dione Quorum sensing; Biofilm formation 2 4
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MalI Maltose utilization 2 3
TF MarR Salicylate; Tetracycline; Chloramphenicol Antibiotic resistance 1 1
TF MetR Homocysteine Methionine biosynthesis 6 9
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 4 5
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 3 3
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF MurR N-acetylmuramate-6-phosphate N-acetylmuramate utilization 2 2
TF NadR NAD NAD biosynthesis 2 2
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 6 8
TF NanR N-acetylneuraminic acid Sialic acid utilization 1 1
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 23 28
TF NhaR Potassium ion Osmotic stress response 1 2
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 1 1
TF NorR Nitric oxide Nitrosative stress response 2 2
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 3 8
TF NsrR Nitric oxide Nitrosative stress response 10 15
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 10 21
TF PdhR Pyruvate Pyruvate metabolism 3 4
TF PurR Hypoxanthine; Guanine Purine metabolism 24 29
TF QorR Energy metabolism 1 1
TF RbsR Ribose Ribose utilization 1 1
TF RcnR Nickel ion, (Ni2+); Cobalt ion, (Co2+) Cobalt resistance; Nickel resistance 2 2
TF RhaR Rhamnose Rhamnose utilization 2 2
TF RhaS Rhamnose Rhamnose utilization 2 2
TF RutR Uracil Pyrimidine utilization 3 3
TF SorC Sorbose Sorbose utilization 1 1
TF SoxR Paraquat Superoxide stress response 2 2
TF TrpR Tryptophan Tryptophan biosynthesis 4 4
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 9 17
TF UlaR Ascorbate-6-phosphate Ascorbate utilization 2 2
TF UxuR Glucuronate Glucuronate utilization 8 13
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 2 2
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