Propagation of Fur regulog to Shigella flexneri 5 str. 8401
| Source regulog: | Fur - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shigella flexneri 5 str. 8401 |
| Orthologous TF(s) | SFV_0648 |
| Regulated genes | 31 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -135
Score: 4.7 Sequence: CTTTATAATAATCATTCTC
Position: -129
Score: 4.7 Sequence: AATAATCATTCTCGTTTAC
Locus tag: SFV_0135
|
||||
| SFV_0135 | -135 | 4.7 | CTTTATAATAATCATTCTC | |
| -129 | 4.7 | AATAATCATTCTCGTTTAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fhuA | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0150 | -57 | 4.4 | CTTTATAATAATCATTCTC |
| -51 | 4.5 | AATAATCATTCTCGTTTAC | ||
| Salmonella typhimurium LT2 | STM0191 | -56 | 4.8 | GGTTATAATAATAATTATC |
| -50 | 4.8 | AATAATAATTATCGTTTAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03218 | -57 | 4 | GGTCATAAGAATAATTCTC |
| -51 | 4.3 | AAGAATAATTCTCGTTTAC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00165 | -56 | 4 | CGTCATAATAATAATTCTC |
| -50 | 4.5 | AATAATAATTCTCGTTTAC | ||
| Enterobacter sp. 638 | Ent638_0690 | -58 | 4.3 | GGTCATAATAATAATTCTC |
| -52 | 4.5 | AATAATAATTCTCGTTTAC | ||
|
Position: -184
Score: 4.4 Sequence: GTTATTAATAACTATTTGC
Position: -178
Score: 4.1 Sequence: AATAACTATTTGCATTTGC
Locus tag: SFV_0529
|
||||
| SFV_0529 | -184 | 4.4 | GTTATTAATAACTATTTGC | |
| -178 | 4.1 | AATAACTATTTGCATTTGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fepA | ||||
| Ortholog function: TonB-dependent siderophore receptor FepA | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0584 | -184 | 4.1 | ATTATTGATAACTATTTGC |
| -178 | 4 | GATAACTATTTGCATTTGC | ||
| Salmonella typhimurium LT2 | STM0585 | -132 | 4.1 | ATTATTGATAACTATTTGC |
| -126 | 4 | GATAACTATTTGCATTTGC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02579 | -246 | 4.4 | GATAACTATTTTCATTTGC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00602 | -197 | 4.1 | ATTATTGATAACTATTTGC |
| -191 | 4 | GATAACTATTTGCATTTGC | ||
| Enterobacter sp. 638 | Ent638_1116 | -196 | 4.4 | ATTATTGATAACTATTTTC |
| -190 | 4.4 | GATAACTATTTTCATTTGC | ||
|
Position: -37
Score: 4.9 Sequence: GATAACGATAATTAATTTC
Position: -31
Score: 5 Sequence: GATAATTAATTTCATTATC
Locus tag: SFV_0538
|
||||
| SFV_0538 | -37 | 4.9 | GATAACGATAATTAATTTC | |
| -31 | 5 | GATAATTAATTTCATTATC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fepD | ||||
| Ortholog function: iron-enterobactin (enterochelin) ABC transporter membrane protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0590 | -37 | 4.8 | GATAACGATAATTAATTTC |
| -31 | 4.9 | GATAATTAATTTCATTATC | ||
| Salmonella typhimurium LT2 | STM0592 | -37 | 4.8 | GATAACGATAATTACTATC |
| -31 | 5 | GATAATTACTATCATTATC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02571 | -37 | 4.8 | GATAACGATAATTACTATC |
| -31 | 5 | GATAATTACTATCATTATC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00608 | -43 | 4.8 | GATAACGATAATTACTATC |
| -37 | 5 | GATAATTACTATCATTATC | ||
| Enterobacter sp. 638 | Ent638_1122 | -30 | 4.8 | GATAACGATAATTACTATC |
| -24 | 5 | GATAATTACTATCATTATC | ||
| Serratia proteamaculans 568 | Spro_3424 | -48 | 4.4 | AATAATGATAATAAAACTC |
| -42 | 4.4 | GATAATAAAACTCATTTAT | ||
|
Position: -98
Score: 5 Sequence: GATAATGAAATTAATTATC
Position: -92
Score: 5 Sequence: GAAATTAATTATCGTTATC
Locus tag: SFV_0539
|
||||
| SFV_0539 | -98 | 5 | GATAATGAAATTAATTATC | |
| -92 | 5 | GAAATTAATTATCGTTATC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybdA | ||||
| Ortholog function: enterobactin exporter EntS, MFS family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0591 | -98 | 4.8 | GATAATGAAATTAATTATC |
| -92 | 4.9 | GAAATTAATTATCGTTATC | ||
| Salmonella typhimurium LT2 | STM0593 | -98 | 4.9 | GATAATGATAGTAATTATC |
| -92 | 4.8 | GATAGTAATTATCGTTATC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02570 | -99 | 4.9 | GATAATGATAGTAATTATC |
| -93 | 4.8 | GATAGTAATTATCGTTATC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00609 | -94 | 4.9 | GATAATGATAGTAATTATC |
| -88 | 4.8 | GATAGTAATTATCGTTATC | ||
| Enterobacter sp. 638 | Ent638_1123 | -94 | 4.9 | GATAATGATAGTAATTATC |
| -88 | 4.8 | GATAGTAATTATCGTTATC | ||
| Serratia proteamaculans 568 | Spro_3423 | -112 | 4.4 | ATAAATGAGTTTTATTATC |
| -106 | 4.4 | GAGTTTTATTATCATTATT | ||
|
Position: -262
Score: 4.9 Sequence: AATAATGATTATCACTTAT
Position: -147
Score: 4.8 Sequence: GAAAATGAGAAGCATTATT
Locus tag: SFV_0540
|
||||
| SFV_0540 | -262 | 4.9 | AATAATGATTATCACTTAT | |
| -147 | 4.8 | GAAAATGAGAAGCATTATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fepB | ||||
| Ortholog function: ferric enterobactin (enterochelin) binding protein; periplasmic component | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0592 | -230 | 4.7 | GAAAATGAGAAGCATTATT |
| Citrobacter koseri ATCC BAA-895 | CKO_02569 | -203 | 4.7 | GAAAATGAGAAGCATTAAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00610 | -166 | 4.8 | GATATTAAGAATAATTATC |
| -160 | 4.6 | AAGAATAATTATCATTTAT | ||
| Enterobacter sp. 638 | Ent638_1124 | -159 | 4.6 | AAGAATAATTATCATTTAT |
| -44 | 4.7 | GAAAATGAGAAGCATTAAC | ||
|
Position: -47
Score: 5.2 Sequence: TATAATGAGAATTATTATC
Position: -41
Score: 4.9 Sequence: GAGAATTATTATCATTAAA
Locus tag: SFV_0585
|
||||
| SFV_0585 | -47 | 5.2 | TATAATGAGAATTATTATC | |
| -41 | 4.9 | GAGAATTATTATCATTAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gpmA | ||||
| Ortholog function: phosphoglyceromutase 1 | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0755 | -47 | 5 | TATAATGAGAATTATTATC |
| -41 | 4.7 | GAGAATTATTATCATTAAA | ||
| Salmonella typhimurium LT2 | STM0772 | -47 | 5 | TATAATGAGAATTATTATC |
| -41 | 4.5 | GAGAATTATTATCATTACA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_02381 | -46 | 5 | TATAATGAGAATTATTATC |
| -40 | 4.5 | GAGAATTATTATCATTCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00768 | -96 | 4.6 | TATAATGAGAATAGTTATC |
| Enterobacter sp. 638 | Ent638_1246 | -164 | 4.7 | TATAATGAGAATTGTTATC |
| -158 | 4.1 | GAGAATTGTTATCATTCAA | ||
| Yersinia pestis KIM | y3048 | -103 | 5.3 | TATAATGATAATAATTATC |
| -97 | 4.6 | GATAATAATTATCATTGAA | ||
| Serratia proteamaculans 568 | Spro_1288 | -51 | 4.9 | TATAATGATTTTCGTTATC |
| Edwardsiella tarda EIB202 | ETAE_2569 | -49 | 4.6 | CATGATGATAATAATTATC |
| -43 | 5.3 | GATAATAATTATCATTATA | ||
|
Position: -83
Score: 5 Sequence: TATAATGATACGCATTATC
Locus tag: SFV_0648
|
||||
| SFV_0648 | -83 | 5 | TATAATGATACGCATTATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fur | ||||
| Ortholog function: ferric uptake transcription regulator | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0683 | -83 | 4.9 | TATAATGATACGCATTATC |
| Salmonella typhimurium LT2 | STM0693 | -82 | 4.9 | TATAATGATACGCATTATC |
| Enterobacter sp. 638 | Ent638_1198 | -83 | 4.5 | TATAATGAAACGCATTATC |
| Edwardsiella tarda EIB202 | ETAE_2610 | -193 | 4.4 | TATAATGAATCTCACTATT |
| Proteus mirabilis HI4320 | PMI0543 | -179 | 4.2 | AATATTGAGAATGATAATT |
| -173 | 4.5 | GAGAATGATAATTATTCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1327 | -106 | 4.2 | GGTTTTCATTTTCATTAGC |
|
Position: -245
Score: 4.9 Sequence: GGTAATGAGAATAATTAAC
Locus tag: SFV_1255
|
||||
| SFV_1255 | -245 | 4.9 | GGTAATGAGAATAATTAAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: oppA | ||||
| Ortholog function: oligopeptide ABC transporter; periplasmic binding protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1243 | -245 | 4.7 | GGTAATGAGAATAATTAAC |
| Citrobacter koseri ATCC BAA-895 | CKO_01320 | -247 | 4.3 | GGTGATGAGAATTATTTTC |
| -241 | 4 | GAGAATTATTTTCAATAAG | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02197 | -216 | 4.4 | GCAAATGAGAATTATTTTT |
| Enterobacter sp. 638 | Ent638_2302 | -247 | 4 | GTAGATGAGAATGATTTTC |
|
Position: -95
Score: 5.4 Sequence: GTTAATGATAATTATTTTC
Position: -89
Score: 4.8 Sequence: GATAATTATTTTCATTTTG
Locus tag: SFV_1379
|
||||
| SFV_1379 | -95 | 5.4 | GTTAATGATAATTATTTTC | |
| -89 | 4.8 | GATAATTATTTTCATTTTG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sitA | ||||
| Ortholog function: iron ABC transporter, periplasmic substrate-binding protein | ||||
| Salmonella typhimurium LT2 | STM2861 | -99 | 4.5 | GCAAATAAGAATTATTTTC |
| -93 | 4.2 | AAGAATTATTTTCATTTAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04090 | -84 | 4.5 | GTAAATAAGAATTATTTTC |
| -78 | 4.2 | AAGAATTATTTTCATTTAT | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00940 | -111 | 4.1 | GATAAAGATAATTTTTCTC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03078 | -99 | 4.5 | GCAAATAAGAATTATTTTC |
| -93 | 4.2 | AAGAATTATTTTCATTTAT | ||
| Enterobacter sp. 638 | Ent638_1111 | -98 | 4.9 | TTTAATGATAATTATTTTC |
| -92 | 4.5 | GATAATTATTTTCATTTAA | ||
| Yersinia pestis KIM | y1897 | -39 | 5.2 | GGTATTGATAATCATTTTC |
| -33 | 4.7 | GATAATCATTTTCATTTGT | ||
| Serratia proteamaculans 568 | Spro_2133 | -41 | 5.4 | GATATTGATAATCATTTTC |
| -35 | 4.6 | GATAATCATTTTCATTTGA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2392 | -53 | 5.1 | GATATTGATAATTATTCTC |
| Proteus mirabilis HI4320 | PMI1027 | -63 | 4.2 | TGAAATGATATTGATAATC |
| -57 | 5.5 | GATATTGATAATCATTATC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2672 | -49 | 5.2 | GATATTGATAATCGTTATC |
| -43 | 4.5 | GATAATCGTTATCATATAC | ||
|
Position: -269
Score: 4.6 Sequence: TCAAATGATAATAAATATC
Locus tag: SFV_1696
|
||||
| SFV_1696 | -269 | 4.6 | TCAAATGATAATAAATATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydhY | ||||
| Ortholog function: oxidoreductase, Fe-S subunit | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1674 | -267 | 4.5 | TCAAATGATAATAAATATC |
| Citrobacter koseri ATCC BAA-895 | CKO_01699 | -215 | 4.4 | CTAAATGATAATAAATATC |
| Proteus mirabilis HI4320 | PMI0070 | -300 | 4.1 | ACTAACGATAATTAATTTT |
|
Position: -65
Score: 4.6 Sequence: TGAACTGATAATCATTATC
Position: -59
Score: 5.2 Sequence: GATAATCATTATCACTAAC
Locus tag: SFV_1707
|
||||
| SFV_1707 | -65 | 4.6 | TGAACTGATAATCATTATC | |
| -59 | 5.2 | GATAATCATTATCACTAAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sufA | ||||
| Ortholog function: scaffold protein for iron-sulfur cluster assembly | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1684 | -65 | 4.4 | TGAACTGATAATCATTATC |
| -59 | 5.1 | GATAATCATTATCACTAAC | ||
| Salmonella typhimurium LT2 | STM1369 | -66 | 4.7 | TGAAGTGATAATCATTATC |
| -60 | 5.1 | GATAATCATTATCACTAAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01717 | -66 | 4.7 | TGAAGTGATAATCATTATC |
| -60 | 5.1 | GATAATCATTATCACTAAC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02141 | -66 | 4.7 | TGAAGTGATAATCATTATC |
| -60 | 5.1 | GATAATCATTATCACTAAC | ||
| Enterobacter sp. 638 | Ent638_1760 | -67 | 4.4 | TGAAGTGATAATCGTTATC |
| -61 | 4.7 | GATAATCGTTATCACTAAC | ||
| Yersinia pestis KIM | y1934 | -129 | 4.5 | TGAAGTGATAATTATTATC |
| -123 | 4.8 | GATAATTATTATCACTACC | ||
| Serratia proteamaculans 568 | Spro_2179 | -77 | 4.4 | TGAAGTGATAATCGTTATC |
| -71 | 4.7 | GATAATCGTTATCACTAAC | ||
| Proteus mirabilis HI4320 | PMI1416 | -66 | 4.4 | GATAAGGGTTATCATTACC |
| -60 | 4 | GGTTATCATTACCATTAGA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2622 | -87 | 4.4 | GATAAAGGTTATCATTACC |
| -81 | 4.3 | GGTTATCATTACCATTATA | ||
|
Position: -126
Score: 3.7 Sequence: GGTAATGCGTTTTATTCCC
Locus tag: SFV_1949
|
||||
| SFV_1949 | -126 | 3.7 | GGTAATGCGTTTTATTCCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ftnA | ||||
| Ortholog function: ferritin | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1905 | -127 | 3.4 | GgTAATGcgttTtATTccC |
| -121 | 3 | GcgttTtATtccCATTcgt | ||
| Salmonella typhimurium LT2 | STM1935 | -100 | 4 | AATAATTAAATTTAATATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01042 | -97 | 4.3 | AATAATTAAATTTATTATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02402 | -161 | 4 | ATAAATTAAAAGCATTCTC |
| -155 | 3.8 | TAAAAGCATTCTCATTTAT | ||
| Enterobacter sp. 638 | Ent638_2486 | -103 | 3.7 | TATTTTAATAAATAATATC |
| -97 | 3.6 | AATAAATAATATCTTTATT | ||
| Erwinia amylovora ATCC 49946 | EAM_2940 | -131 | 4.4 | TGGAATGATTATCAATTAC |
| Yersinia pestis KIM | y2524 | -93 | 4.4 | AATAATGTGAATGATTATC |
| -87 | 4.1 | GTGAATGATTATCATGATG | ||
| Serratia proteamaculans 568 | Spro_1942 | -174 | 4.5 | GAAAATAGTTATCATAATT |
| -168 | 4 | AGTTATCATAATTATTTAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2473 | -158 | 4.6 | TTAAATGATAATGAATATC |
| -152 | 4.8 | GATAATGAATATCAATAGC | ||
| Proteus mirabilis HI4320 | PMI1007 | -184 | 4.7 | GTTAATGATAATCAATTCC |
| -178 | 4.1 | GATAATCAATTCCATTAAT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2689 | -147 | 4.4 | TTAAATGAGATTCATTTTC |
| -141 | 4.4 | GAGATTCATTTTCATTTTT | ||
|
Position: -38
Score: 4.5 Sequence: ATAAATGATACTCACTCTC
Locus tag: SFV_1960
|
||||
| SFV_1960 | -38 | 4.5 | ATAAATGATACTCACTCTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdiA | ||||
| Ortholog function: transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1916 | -38 | 4.4 | ATAAATGATACTCACTCTC |
| Salmonella typhimurium LT2 | STM1950 | -44 | 4.4 | ATTCATAATAATGATTATC |
| -38 | 5.3 | AATAATGATTATCAATATC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_01029 | -44 | 4.4 | AAACATTATAATGATTATC |
| -38 | 5 | TATAATGATTATCAATCTC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02414 | -78 | 4.6 | ATTTATAATAATGATTATC |
| -72 | 4.4 | AATAATGATTATCAATCAG | ||
| Enterobacter sp. 638 | Ent638_2503 | -39 | 4.2 | AATAATGATTAGTTTTTTC |
|
Position: -193
Score: 4.4 Sequence: AATAATTGTTATCGTTTGC
Locus tag: SFV_2230
|
||||
| SFV_2230 | -193 | 4.4 | AATAATTGTTATCGTTTGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cirA | ||||
| Ortholog function: TonB-dependent ferric iron-catecholate receptor | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2155 | -201 | 4.3 | TGGATTGATAATTGTTATC |
| -195 | 4.4 | GATAATTGTTATCGTTTGC | ||
|
Position: -68
Score: 5 Sequence: GAATTTGATAATCATTCTC
Position: -62
Score: 4.3 Sequence: GATAATCATTCTCGTTTAG
Locus tag: SFV_2449
|
||||
| SFV_2449 | -68 | 5 | GAATTTGATAATCATTCTC | |
| -62 | 4.3 | GATAATCATTCTCGTTTAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mntH | ||||
| Ortholog function: Mn2+/Fe2+ transporter, NRAMP family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2392 | -68 | 4.7 | GAATTTGATAATCATTCTC |
| -62 | 4.2 | GATAATCATTCTCGTTTGG | ||
| Salmonella typhimurium LT2 | STM2408 | -68 | 4.5 | GCACTTGATAATCATTATC |
| -62 | 4.8 | GATAATCATTATCAATAAA | ||
| Citrobacter koseri ATCC BAA-895 | CKO_00404 | -50 | 4.3 | GCACTTGATAATCATTCTC |
| -44 | 4.5 | GATAATCATTCTCAATAAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02743 | -68 | 4.3 | GAACTTGATAATCATTCGC |
| -62 | 4.3 | GATAATCATTCGCATTTTG | ||
| Enterobacter sp. 638 | Ent638_2926 | -67 | 4.8 | GATCTTGATAATCATTCTC |
| -61 | 4.8 | GATAATCATTCTCATTTTG | ||
| Yersinia pestis KIM | y1500 | -78 | 4 | GCGCTTGATAATTATTCTC |
| -72 | 4.6 | GATAATTATTCTCATTTAA | ||
| Serratia proteamaculans 568 | Spro_3415 | -66 | 4.3 | GCACTTGATAATTATTATC |
| -60 | 5.2 | GATAATTATTATCATTTAC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0843 | -63 | 4.5 | GCACTTGATAATCATTATC |
| -57 | 5.2 | GATAATCATTATCATTTTT | ||
| Edwardsiella tarda EIB202 | ETAE_1142 | -134 | 4.5 | GCAGTTGATAATCATTATC |
|
Position: -97
Score: 4.2 Sequence: AGTAATGAGAACGACTATC
Locus tag: SFV_3057
|
||||
| SFV_3057 | -97 | 4.2 | AGTAATGAGAACGACTATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: exbB | ||||
| Ortholog function: TonB-dependent siderophore transporter component ExbB | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3006 | -82 | 4.1 | AGTAATGAGAACGACTATC |
| Salmonella typhimurium LT2 | STM3159 | -82 | 4.1 | AGTAATGAGAACGACTATC |
| Citrobacter koseri ATCC BAA-895 | CKO_04401 | -97 | 4.1 | AGTAATGAGAACGACTATC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03426 | -97 | 4.3 | ACTAATGAGAACCACTATC |
| Enterobacter sp. 638 | Ent638_3417 | -97 | 4.3 | ACTAATGAGAACCACTATC |
| Yersinia pestis KIM | y3495 | -71 | 4.8 | ACTAATGATAATTACTATC |
| Serratia proteamaculans 568 | Spro_4211 | -94 | 4.4 | AATAATGAGAACTACTATC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0358 | -206 | 4.3 | AATAATGAGAACGACTATC |
| Proteus mirabilis HI4320 | PMI0029 | -170 | 4.8 | AGTAATGATAATTACTATC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3941 | -98 | 5.1 | AATAATGATAATTACTATC |
|
Position: -55
Score: 4.8 Sequence: TGTAATCATAACCATTCTC
Position: -49
Score: 4.4 Sequence: CATAACCATTCTCATTTAC
Locus tag: SFV_3343
|
||||
| SFV_3343 | -55 | 4.8 | TGTAATCATAACCATTCTC | |
| -49 | 4.4 | CATAACCATTCTCATTTAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfd | ||||
| Ortholog function: bacterioferritin-associated ferredoxin | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3337 | -51 | 3.9 | tgaAATaAgAActATTtTC |
| -45 | 3.9 | aAgAActATttTCATTtat | ||
| Salmonella typhimurium LT2 | STM3444 | -55 | 4.6 | TGTAATCATAACCATTCTC |
| -49 | 4.3 | CATAACCATTCTCATTTAC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04744 | -55 | 4.3 | TGTAATCATAACTATTCTC |
| -49 | 4.2 | CATAACTATTCTCATTTAC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03723 | -55 | 4.6 | TGTAATCATAACCATTCTC |
| -49 | 3.9 | cATAAccATtcTCATTtaa | ||
| Enterobacter sp. 638 | Ent638_3755 | -55 | 4.7 | TGTAATCATAATTATTCTC |
| -49 | 4.2 | CATAATTATTCTCACTTAC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4034 | -132 | 3.9 | tgaAATaAaAATaATTcTt |
| -126 | 4.4 | AAAAATAATTCTTATTTAC | ||
| Proteus mirabilis HI4320 | PMI3252 | -57 | 4.2 | TGAAATAACAATGATTATC |
| -51 | 4.8 | AACAATGATTATCATTTAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4729 | -59 | 4.4 | TGAAATGAGACTCATTATT |
| -53 | 3.6 | GAgAcTcATtATtATTtaa | ||
|
Position: -132
Score: 4.6 Sequence: AGAAACCATTCTCATTATC
Locus tag: SFV_3413
|
||||
| SFV_3413 | -132 | 4.6 | AGAAACCATTCTCATTATC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: ferrous iron transport protein A | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3408 | -138 | 3.4 | GcTgATagaAAcCATTcTC |
| -132 | 4.5 | AGAAACCATTCTCATTATC | ||
| Salmonella typhimurium LT2 | STM3505 | -140 | 3.5 | GAagATagaAAcCATTcTC |
| -133 | 4.5 | AGAAACCATTCTCATTATC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_04830 | -139 | 4.1 | GATGATAAAAACCATTCTC |
| -133 | 4.7 | AAAAACCATTCTCATTATC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03778 | -133 | 4.1 | GATGATAAAAACCATTCTC |
| -127 | 4.7 | AAAAACCATTCTCATTATC | ||
| Enterobacter sp. 638 | Ent638_3821 | -62 | 4.5 | AGAAACCATTCTCATTATC |
| Yersinia pestis KIM | y3912 | -118 | 4.1 | GAGCATGAAAATAATTCTC |
| -112 | 4.4 | GAAAATAATTCTCAGTATT | ||
| Serratia proteamaculans 568 | Spro_4628 | -155 | 4.3 | GAATACGATAATGATTCTC |
| -149 | 4.9 | GATAATGATTCTCACTATT | ||
| Edwardsiella tarda EIB202 | ETAE_3283 | -163 | 4.3 | GAAAACGATTATCAGTTTT |
| -157 | 4.1 | GATTATCAGTTTTATTATA | ||
| Proteus mirabilis HI4320 | PMI2920 | -138 | 4 | AAAGATGGTTATAATTCTC |
| -132 | 4.3 | GGTTATAATTCTCATTTGC | ||
| -59 | 4.8 | GTTAATAATTATCAGTATC | ||
| -53 | 4.6 | AATTATCAGTATCATTATT | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0209 | -244 | 4 | AATGTTGGTTATTATTCTC |
| -238 | 4.2 | GGTTATTATTCTCATTTGC | ||
|
Position: -41
Score: 5 Sequence: TACAATAATAATCATTCTC
Position: -35
Score: 4.9 Sequence: AATAATCATTCTCATTCGC
Locus tag: SFV_3449
|
||||
| SFV_3449 | -41 | 5 | TACAATAATAATCATTCTC | |
| -35 | 4.9 | AATAATCATTCTCATTCGC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhhY | ||||
| Ortholog function: GCN5-related N-acetyltransferase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3441 | -119 | 4.9 | GACAATAATAATCATTCTC |
| -113 | 4.7 | AATAATCATTCTCATTCGC | ||
| Erwinia amylovora ATCC 49946 | EAM_3278 | -118 | 4.9 | GGCAATAATAATCATTATC |
| -112 | 4.9 | AATAATCATTATCATTCGC | ||
| Serratia proteamaculans 568 | Spro_4654 | -128 | 4.6 | CGCAATAATAATCATTATC |
| -122 | 4.7 | AATAATCATTATCATTCGT | ||
|
Position: -99
Score: 4.9 Sequence: GGCATTGATAATCATTTTC
Position: -93
Score: 5.2 Sequence: GATAATCATTTTCAATATC
Locus tag: SFV_3587
|
||||
| SFV_3587 | -99 | 4.9 | GGCATTGATAATCATTTTC | |
| -93 | 5.2 | GATAATCATTTTCAATATC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: manganese/iron superoxide dismutase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3908 | -99 | 4.7 | GGCATTGATAATCATTTTC |
| -93 | 5 | GATAATCATTTTCAATATC | ||
| Salmonella typhimurium LT2 | STM4055 | -99 | 4.7 | GGCATTGATAATCATTTTC |
| -93 | 5 | GATAATCATTTTCAATATC | ||
| Citrobacter koseri ATCC BAA-895 | CKO_03093 | -88 | 4.3 | GGCATTGATAAGCATTTTC |
| -82 | 4.4 | GATAAGCATTTTCAATATC | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -88 | 4.3 | GGCATTGATAAGCATTTTC |
| -82 | 4 | GATAAGCATTTTCAATACC | ||
| Enterobacter sp. 638 | Ent638_4063 | -100 | 4.7 | GGCATTGATAATCATTTTC |
| -94 | 5 | GATAATCATTTTCAATATC | ||
| Yersinia pestis KIM | y4080 | -104 | 4.4 | AGGTTTGATAATCATTTTC |
| -98 | 5 | GATAATCATTTTCAATATC | ||
| Serratia proteamaculans 568 | Spro_0081 | -105 | 4.7 | GGCATTGATAATCATTTTC |
| -99 | 5 | GATAATCATTTTCAATATC | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0092 | -105 | 4.9 | AATAATCATTTTCAATATC |
| Proteus mirabilis HI4320 | PMI3036 | -95 | 4.6 | GGATATGATAATGATTTTC |
| -89 | 5.2 | GATAATGATTTTCATTAAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -102 | 4.3 | GGTATTGATAAGCATTTCC |
|
Position: -61
Score: 5.4 Sequence: GATAATGAGAATCATTATT
Position: -40
Score: 4.2 Sequence: CATAATTGTTATTATTTTA
Locus tag: SFV_3854
|
||||
| SFV_3854 | -61 | 5.4 | GATAATGAGAATCATTATT | |
| -40 | 4.2 | CATAATTGTTATTATTTTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: iucA2 | ||||
| Ortholog function: aerobactin synthetase (subunit alpha) | ||||
| Yersinia pestis KIM | y3380 | -63 | 4.8 | GATAATGATAACCACTATT |
| Yersinia pestis KIM | y3381 | -63 | 4.8 | GATAATGATAACCACTATT |
| Serratia proteamaculans 568 | Spro_0922 | -63 | 4.2 | GATAACAATAAATATTATT |
| -45 | 4.1 | TGATATAAGAATCATTCTC | ||
|
Position: -114
Score: 4.3 Sequence: TAAAATAATAACAATTATG
Position: -93
Score: 5.6 Sequence: AATAATGATTCTCATTATC
Locus tag: SFV_3855
|
||||
| SFV_3855 | -114 | 4.3 | TAAAATAATAACAATTATG | |
| -93 | 5.6 | AATAATGATTCTCATTATC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: CKO_00976 | ||||
| Ortholog function: hypothetical protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00976 | -90 | 4.3 | GATAAGGTTTCTCATTATC |