Propagation of UxuR regulog to Shigella flexneri 5 str. 8401
| Source regulog: | UxuR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | Glucuronate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shigella flexneri 5 str. 8401 |
| Orthologous TF(s) | SFV_4202 |
| Regulated genes | 8 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -62
Score: 4.8 Sequence: GAATTGGTTAACTAATCA
Locus tag: SFV_1633
|
||||
| SFV_1633 | -62 | 4.8 | GAATTGGTTAACTAATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uidA | ||||
| Ortholog function: beta-D-glucuronidase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1617 | -62 | 4.8 | GAATTGGTTAACTAATCA |
| -42 | 4.6 | TTAAAGGTTGACCAGTAT | ||
|
Position: -167
Score: 4.1 Sequence: AATTTATTATACCAATCT
Locus tag: SFV_2250
|
||||
| SFV_2250 | -167 | 4.1 | AATTTATTATACCAATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yeiQ | ||||
| Ortholog function: paralog of D-mannonate oxidoreductase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2172 | -176 | 4.1 | AATTTATTATACCAATCT |
| Yersinia pestis KIM | y2903 | -363 | 4.3 | AtgTTGtTatACCgATTT |
| -250 | 3.9 | tAtTgGacTtACCAATTT | ||
| -92 | 4.2 | AAAcTGGTctAaCAAcTT | ||
|
Position: -221
Score: 5.4 Sequence: TATTTGGTTGACCAGTTT
Locus tag: SFV_4202
|
||||
| SFV_4202 | -221 | 5.4 | TATTTGGTTGACCAGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxuR | ||||
| Ortholog function: D-glucuronate repressor, GntR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4324 | -173 | 5.4 | TATTTGGTTGACCAGTTT |
| Salmonella typhimurium LT2 | STM4507 | -231 | 5.9 | ATATTGGTAAACCAATAT |
| -106 | 5.1 | TTGTTGGTTGACCAGTTT | ||
| Edwardsiella tarda EIB202 | ETAE_1037 | -330 | 5.3 | TTTTTGGTTGACCAATAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0171 | -77 | 5.7 | TTTTTGGTTGACCAATTT |
|
Position: -286
Score: 4.8 Sequence: AAATTGGTCAACCATTGT
Position: -180
Score: 4.9 Sequence: GATGCGGTTAACCAATTT
Locus tag: SFV_4204
|
||||
| SFV_4204 | -286 | 4.8 | AAATTGGTCAACCATTGT | |
| -180 | 4.9 | GATGCGGTTAACCAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxuA | ||||
| Ortholog function: Mannonate dehydratase (EC 4.2.1.8) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4322 | -180 | 5.4 | GATGTGGTTAACCAATTT |
| Salmonella typhimurium LT2 | STM3135 | -336 | 5.6 | AAATTGGTTGACCAATCA |
| -149 | 5.2 | GATTTGGTTAGCCAATTT | ||
| Yersinia pestis KIM | y2902 | -510 | 4.5 | AAgTTGtTagACCAgTTT |
| -352 | 4 | AAATTGGTaAgtCcAaTa | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1093 | -109 | 5.2 | TAATTGGTCAATCAATTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0170 | -77 | 5.7 | TTTTTGGTTGACCAATTT |
|
Position: -71
Score: 5.6 Sequence: ACAATGGTTGACCAATTT
Locus tag: SFV_4205
|
||||
| SFV_4205 | -71 | 5.6 | ACAATGGTTGACCAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gntP | ||||
| Ortholog function: Fructuronate transporter GntP | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4321 | -177 | 5.4 | AAATTGGTTAACCACATC |
| -71 | 5.6 | ACAATGGTTGACCAATTT | ||
| Yersinia pestis KIM | y3426 | -226 | 5.2 | AACTTGGTTAACCAATAC |
| Edwardsiella tarda EIB202 | ETAE_1036 | -70 | 5.1 | TTATTGGTCAACCAAAAA |
| -29 | 5.8 | AAATTGGTTGACCAAATG | ||
|
Position: 27
Score: 3.9 Sequence: AATGTGATTAACCAGGTC
Locus tag: SFV_4388
|
||||
| SFV_4388 | 27 | 3.9 | AATGTGATTAACCAGGTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjjM | ||||
| Ortholog function: L-galactonate transcriptional regulator, GntR family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4357 | 27 | 3.9 | AATGTGATTAACCAGGTC |
|
Position: -20
Score: 3.8 Sequence: AAAATGGTCAGCAAGTTG
Locus tag: SFV_4389
|
||||
| SFV_4389 | -20 | 3.8 | AAAATGGTCAGCAAGTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjjN | ||||
| Ortholog function: L-galactonate oxidoreductase | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4358 | -183 | 3.8 | GACCTGGTTAATCACATT |
| Salmonella typhimurium LT2 | STM3082 | -34 | 4.4 | GAATTGGTAAACAAAACA |