Regulog UxuR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization |
| Effector: | Glucuronate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - ExuR/UxuR
- By TF family - GntR/Others
- By effector - Glucuronate
- By pathway - Glucuronate utilization
| Genome | Genes | Operons |
|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | 12 | 9 |
| Salmonella typhimurium LT2 | 9 | 4 |
| Citrobacter koseri ATCC BAA-895 | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | ||
| Enterobacter sp. 638 | ||
| Erwinia amylovora ATCC 49946 | ||
| Yersinia pestis KIM | 6 | 6 |
| Serratia proteamaculans 568 | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | 5 | 4 |
| Edwardsiella tarda EIB202 | 8 | 6 |
| Proteus mirabilis HI4320 | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | 9 | 3 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| yeiQ |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -176 score = 4.13592 sequence = AATTTATTATACCAATCT Gene: b2172: paralog of D-mannonate oxidoreductase |
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paralog of D-mannonate oxidoreductase |
| CRON 2. | |||||||||||||
| STM3083 |
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Salmonella typhimurium LT2 Site: position = -34 score = 4.44134 sequence = GAATTGGTAAACAAAACA Gene: STM3083: putative dehydrogenase |
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putative dehydrogenase |
| yjjN |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -183 score = 3.80066 sequence = GACCTGGTTAATCACATT Gene: b4358: L-galactonate oxidoreductase |
Gene: STM3082: L-galactonate oxidoreductase |
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Gene: Spro_1409: L-galactonate oxidoreductase |
Gene: ECA4382: L-galactonate oxidoreductase |
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L-galactonate oxidoreductase |
| STM3081 |
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Gene: STM3081: putative malate/L-lactate dehydrogenase |
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putative malate/L-lactate dehydrogenase |
| STM3080 |
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Gene: STM3080: putative mannitol dehydrogenase |
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putative mannitol dehydrogenase |
| CRON 3. | |||||||||||||
| uxuQ |
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Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -201 score = 5.46956 sequence = GATTTGGTTGACCAATAT Site: position = -53 score = 4.48355 sequence = tAtTTGGTcgAtCAAaTc Gene: plu0173: Predicted glucuronate TRAP-type transporter, small permease component |
Predicted glucuronate TRAP-type transporter, small permease component |
| uxuM |
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Gene: plu0174: Predicted glucuronate TRAP-type transporter, laerge permease component |
Predicted glucuronate TRAP-type transporter, laerge permease component |
| uxuB |
Gene: b4323: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: STM3136: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: CKO_00608: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: KPN_02605: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: Ent638_2768: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Yersinia pestis KIM Site: position = -363 score = 4.25299 sequence = AtgTTGtTatACCgATTT Site: position = -250 score = 3.90367 sequence = tAtTgGacTtACCAATTT Site: position = -92 score = 4.17841 sequence = AAAcTGGTctAaCAAcTT Gene: y2903: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: Spro_3239: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: ECA0819: D-mannonate oxidoreductase (EC 1.1.1.57) |
Gene: ETAE_2291: D-mannonate oxidoreductase (EC 1.1.1.57) |
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Gene: plu0175: D-mannonate oxidoreductase (EC 1.1.1.57) |
D-mannonate oxidoreductase (EC 1.1.1.57) |
| uxaC2 |
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Gene: STM3137: Uronate isomerase (EC 5.3.1.12) |
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Gene: plu0176: Uronate isomerase (EC 5.3.1.12) |
Uronate isomerase (EC 5.3.1.12) |
| kdgK2 |
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Gene: plu0177: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) |
| eda2 |
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Gene: plu0178: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
| uxuA |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -180 score = 5.3774 sequence = GATGTGGTTAACCAATTT Gene: b4322: Mannonate dehydratase (EC 4.2.1.8) |
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Salmonella typhimurium LT2 Site: position = -336 score = 5.59795 sequence = AAATTGGTTGACCAATCA Site: position = -149 score = 5.20802 sequence = GATTTGGTTAGCCAATTT Gene: STM3135: Mannonate dehydratase (EC 4.2.1.8) |
Gene: CKO_00609: Mannonate dehydratase (EC 4.2.1.8) |
Gene: KPN_02604: Mannonate dehydratase (EC 4.2.1.8) |
Gene: Ent638_2767: Mannonate dehydratase (EC 4.2.1.8) |
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Yersinia pestis KIM Site: position = -510 score = 4.54077 sequence = AAgTTGtTagACCAgTTT Site: position = -352 score = 4.00956 sequence = AAATTGGTaAgtCcAaTa Gene: y2902: Mannonate dehydratase (EC 4.2.1.8) |
Gene: Spro_3238: Mannonate dehydratase (EC 4.2.1.8) |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -109 score = 5.2234 sequence = TAATTGGTCAATCAATTT Gene: ECA1093: Mannonate dehydratase (EC 4.2.1.8) |
Gene: ETAE_2289: Mannonate dehydratase (EC 4.2.1.8) |
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Gene: plu0170: Mannonate dehydratase (EC 4.2.1.8) |
Mannonate dehydratase (EC 4.2.1.8) |
| uxuR |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -173 score = 5.43923 sequence = TATTTGGTTGACCAGTTT Gene: b4324: D-glucuronate repressor, GntR family |
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Salmonella typhimurium LT2 Site: position = -231 score = 5.88268 sequence = ATATTGGTAAACCAATAT Site: position = -106 score = 5.05204 sequence = TTGTTGGTTGACCAGTTT Gene: STM4507: D-glucuronate repressor, GntR family |
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Gene: y2904: D-glucuronate repressor, GntR family |
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Gene: ECA1092: D-glucuronate repressor, GntR family |
*2
Edwardsiella tarda EIB202 Gene: ETAE_2295: D-glucuronate repressor, GntR family Site: position = -330 score = 5.26476 sequence = TTTTTGGTTGACCAATAA Gene: ETAE_1037: D-glucuronate repressor, GntR family |
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Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -77 score = 5.68335 sequence = TTTTTGGTTGACCAATTT Gene: plu0171: D-glucuronate repressor, GntR family |
D-glucuronate repressor, GntR family |
| uxuP |
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Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -114 score = 5.42026 sequence = ATATTGGTCAACCAAATC Site: position = -262 score = 4.38336 sequence = gAtTTGaTcgACCAAaTa Gene: plu0172: Predicted glucuronate TRAP-type transporter, periplasmic component |
Predicted glucuronate TRAP-type transporter, periplasmic component |
| CRON 4. | |||||||||||||
| uidR |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -129 score = 5.7787 sequence = CTATTGGTTAACCAATTT Gene: b1618: hexuronide repressor, TetR family |
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hexuronide repressor, TetR family |
| CRON 5. | |||||||||||||
| gntP |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -177 score = 5.41297 sequence = AAATTGGTTAACCACATC Site: position = -71 score = 5.57211 sequence = ACAATGGTTGACCAATTT Gene: b4321: Fructuronate transporter GntP |
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Yersinia pestis KIM Site: position = -226 score = 5.18672 sequence = AACTTGGTTAACCAATAC Gene: y3426: Fructuronate transporter GntP |
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Edwardsiella tarda EIB202 Site: position = -70 score = 5.08901 sequence = TTATTGGTCAACCAAAAA Site: position = -29 score = 5.76714 sequence = AAATTGGTTGACCAAATG Gene: ETAE_1036: Fructuronate transporter GntP |
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Fructuronate transporter GntP |
| CRON 6. | |||||||||||||
| lfaT |
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Gene: CKO_02296: Putative MFS superfamily hexuronate transporter |
Gene: KPN_00853: Putative MFS superfamily hexuronate transporter |
Gene: Ent638_1313: Putative MFS superfamily hexuronate transporter |
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Yersinia pestis KIM Site: position = -217 score = 5.15657 sequence = ATTTTGGTGAACCAATAT Gene: y3232: Putative MFS superfamily hexuronate transporter |
Gene: Spro_3599: Putative MFS superfamily hexuronate transporter |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -162 score = 5.94984 sequence = AATTTGGTAAACCAATTT Gene: ECA1967: Putative MFS superfamily hexuronate transporter |
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Putative MFS superfamily hexuronate transporter |
| lfaA |
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Gene: CKO_02297: Alpha-glucosidase (EC 3.2.1.20) |
Gene: KPN_00852: Alpha-glucosidase (EC 3.2.1.20) |
Gene: Ent638_1312: Alpha-glucosidase (EC 3.2.1.20) |
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Gene: y3233: Alpha-glucosidase (EC 3.2.1.20) |
Gene: Spro_3598: Alpha-glucosidase (EC 3.2.1.20) |
Gene: ECA1968: Alpha-glucosidase (EC 3.2.1.20) |
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Alpha-glucosidase (EC 3.2.1.20) |
| CRON 7. | |||||||||||||
| lfaR |
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Gene: CKO_02295: periplasmic binding protein/LacI transcriptional regulator |
Gene: KPN_00854: periplasmic binding protein/LacI transcriptional regulator |
Gene: Ent638_1314: periplasmic binding protein/LacI transcriptional regulator |
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Yersinia pestis KIM Site: position = -194 score = 5.40916 sequence = ATATTGGTTCACCAAAAT Gene: y3231: periplasmic binding protein/LacI transcriptional regulator |
Gene: Spro_3600: periplasmic binding protein/LacI transcriptional regulator |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -176 score = 6.0401 sequence = AAATTGGTTTACCAAATT Gene: ECA1966: periplasmic binding protein/LacI transcriptional regulator |
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periplasmic binding protein/LacI transcriptional regulator |
| CRON 8. | |||||||||||||
| exuR |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -47 score = 4.65195 sequence = AAAGTGGTATAACAAATA Gene: b3094: exu regulon transcriptional regulator |
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Gene: CKO_04496: exu regulon transcriptional regulator |
Gene: KPN_03522: exu regulon transcriptional regulator |
Gene: Ent638_3548: exu regulon transcriptional regulator |
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Yersinia pestis KIM Site: position = -105 score = 4.45377 sequence = TAAGTGGTATAACAAATC Gene: y3602: exu regulon transcriptional regulator |
Gene: Spro_4323: exu regulon transcriptional regulator |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -98 score = 4.45377 sequence = TAAGTGGTATAACAAATC Gene: ECA0643: exu regulon transcriptional regulator |
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Edwardsiella tarda EIB202 Site: position = -68 score = 4.15445 sequence = AAAGTGGTATAACAACTC Gene: ETAE_0434: exu regulon transcriptional regulator |
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exu regulon transcriptional regulator |
| CRON 9. | |||||||||||||
| exuT2 |
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Salmonella typhimurium LT2 Site: position = -273 score = 5.17644 sequence = AAATTGGCTAACCAAATC Site: position = -86 score = 5.32089 sequence = TGATTGGTCAACCAATTT Gene: STM3134: D-glucuronate transporter |
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Edwardsiella tarda EIB202 Site: position = -175 score = 5.00257 sequence = AATTTGGCATACCAATAT Site: position = -207 score = 5.60399 sequence = ACATTGGTTAACCAAATA Gene: ETAE_1915: D-glucuronate transporter |
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D-glucuronate transporter |
| CRON 10. | |||||||||||||
| uidA |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -62 score = 4.8379 sequence = GAATTGGTTAACTAATCA Site: position = -42 score = 4.63786 sequence = TTAAAGGTTGACCAGTAT Gene: b1617: beta-D-glucuronidase |
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Gene: ETAE_3023: beta-D-glucuronidase |
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beta-D-glucuronidase |
| uidB |
Gene: b1616: glucuronide transporter |
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Gene: ETAE_3022: glucuronide transporter |
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glucuronide transporter |
| uidC |
Gene: b1615: hexuronide outer membrane porin |
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Gene: ETAE_3021: hexuronide outer membrane porin |
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hexuronide outer membrane porin |
| CRON 11. | |||||||||||||
| yjjM |
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Escherichia coli str. K-12 substr. MG1655 Site: position = 27 score = 3.88454 sequence = AATGTGATTAACCAGGTC Gene: b4357: L-galactonate transcriptional regulator, GntR family |
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Gene: Spro_1408: L-galactonate transcriptional regulator, GntR family |
Gene: ECA4381: L-galactonate transcriptional regulator, GntR family |
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L-galactonate transcriptional regulator, GntR family |
| CRON 12. | |||||||||||||
| uxaC |
Gene: b3092: Uronate isomerase (EC 5.3.1.12) |
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Gene: CKO_04494: Uronate isomerase (EC 5.3.1.12) |
Gene: KPN_03520: Uronate isomerase (EC 5.3.1.12) |
Gene: Ent638_3546: Uronate isomerase (EC 5.3.1.12) |
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Gene: y3600: Uronate isomerase (EC 5.3.1.12) |
Gene: Spro_4321: Uronate isomerase (EC 5.3.1.12) |
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Edwardsiella tarda EIB202 Site: position = -289 score = 4.55987 sequence = AAATTGGTTGACCTACAG Gene: ETAE_0436: Uronate isomerase (EC 5.3.1.12) |
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Uronate isomerase (EC 5.3.1.12) |
| uxaB |
Gene: b1521: Altronate oxidoreductase (EC 1.1.1.58) |
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Gene: CKO_01541: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: KPN_01640: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: Ent638_2013: Altronate oxidoreductase (EC 1.1.1.58) |
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Gene: y3599: Altronate oxidoreductase (EC 1.1.1.58) |
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Gene: ECA0646: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: ETAE_0437: Altronate oxidoreductase (EC 1.1.1.58) |
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Altronate oxidoreductase (EC 1.1.1.58) |
| uxaA |
Gene: b3091: Altronate hydrolase (EC 4.2.1.7) |
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Gene: CKO_04493: Altronate hydrolase (EC 4.2.1.7) |
Gene: KPN_03519: Altronate hydrolase (EC 4.2.1.7) |
Gene: Ent638_3545: Altronate hydrolase (EC 4.2.1.7) |
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Gene: y3598: Altronate hydrolase (EC 4.2.1.7) |
Gene: Spro_4320: Altronate hydrolase (EC 4.2.1.7) |
Gene: ECA0647: Altronate hydrolase (EC 4.2.1.7) |
Gene: ETAE_0438: Altronate hydrolase (EC 4.2.1.7) |
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Altronate hydrolase (EC 4.2.1.7) |
| CRON 13. | |||||||||||||
| exuT |
Gene: b3093: Hexuronate transporter |
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Gene: CKO_04495: Hexuronate transporter |
Gene: KPN_03521: Hexuronate transporter |
Gene: Ent638_3547: Hexuronate transporter |
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Gene: y3601: Hexuronate transporter |
Gene: Spro_4322: Hexuronate transporter |
Gene: ECA0644: Hexuronate transporter |
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Edwardsiella tarda EIB202 Site: position = -240 score = 4.53355 sequence = CTGTAGGTCAACCAATTT Gene: ETAE_0435: Hexuronate transporter |
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Hexuronate transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |