Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Bacillus pumilus ATCC 7061

Type Regulator Effector Pathway Genes Sites
TF AcoR Acetoin Acetoin utilization 1 1
TF AlsR Acetate Acetoin production 2 2
TF AnsR Asparagine Asparagine degradation 2 3
TF AraR Arabinose Arabinose utilization 2 6
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 6 11
TF BglR Beta-glucoside-6-phosphate Beta-glucosides utilization 2 2
TF BglZ Beta-glucoside Beta-glucosides utilization 1 1
TF BirA Biotin Biotin biosynthesis 3 3
TF BkdR Branched-chain amino acid degradation 1 2
TF BltR Multidrug resistance 1 1
TF Btr Bacillibactin; Fe-Bacillibactin Iron homeostasis 1 1
TF CcpA HPr, phosphocarrier protein Carbon catabolism 61 77
TF CcpC Citrate Citrate metabolism 2 2
TF CcpN Gluconeogenesis 1 1
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CitT Citrate Citrate utilization 1 2
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 65 116
TF ComA ComP, sensor histidine kinase (ComX) Competence 2 2
TF CsoR Copper ion, (Cu+) Copper resistance 1 2
TF CssR CssS, sensor histidine kinase Protein secretion stress response 1 2
TF CtsR Heat shock Heat shock response 3 5
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 4 5
TF CysL Sulfate; Sulfite; Thiosulfate Sulfite reduction 2 3
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 1 1
TF DesR Cold shock response 1 1
TF ExuR Glucuronate; Galacturonate Glucuronate utilization; Galacturonate utilization 1 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 5 5
TF FapR Malonyl-CoA Fatty acid biosynthesis 5 6
TF FatR Oleate; Gamma-linolenic acid; Linoleate; Phytanate Toxic fatty acid stress response 1 1
TF Fnr Oxygen Anaerobic metabolism 1 2
TF Fur Iron ion, (Fe2+) Iron homeostasis 18 42
TF GanR Beta-galactosides Galactan utilization 2 2
TF GbsR (YuaC) Choline Glycine betaine synthesis 1 1
TF GlnL GlnK, sensor histidine kinase (glutamine) Aspartate utilization; Glutamine utilization 2 6
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 2 3
TF GltC Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 2
TF GmuR Glucomannan utilization 1 1
TF HisR Histidine Histidine biosynthesis 2 2
TF HrcA Heat shock Heat shock response 2 2
TF HxlR Formaldehyde Ribulose monophosphate pathway 1 1
TF KdgR 2-keto-3-deoxygluconate Galacturonate utilization; Glucuronate utilization 3 3
TF KipR Sporulation 1 1
TF LexA DNA damage SOS response 16 21
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF MalR MalK, sensor histidine kinase (malate) Malate utilization 3 41
TF MhqR 2-Methylhydroquinone and catechol resistance 3 6
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 2
TF MsmR Alpha-galactosides Alpha-galactosides utilization 1 1
TF MtlR MtlA, mannitol-specific enzyme IICB PTS component; HPr, phosphocarrier protein Mannitol utilization 2 2
TF MurR N-acetylmuramate-6-phosphate N-acetylmuramate utilization 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 2 2
TF NiaR Niacin NAD biosynthesis 2 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF NsrR Nitric oxide Nitrosative stress response 2 4
TF NtdR 3,3'-neotrehalosadiamine Neotrehalosadiamine biosynthesis 2 2
TF OhrR tert-Butyl hydroperoxide; Diamide; Cumene hydroperoxide; Hydrogen peroxide Peroxide stress response 1 1
TF PadR p-Coumaric acid; Ferulic acid Phenolic acid stress response 2 2
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 6 14
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 6 7
TF PutR Proline Proline utilization 1 1
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 3 5
TF RmgR Rhamnogalacturonides utilization 2 5
TF SinR SinI, antirepressor protein Biofilm formation 3 3
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 35 57
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF UxuR Aldotetraouronic acid Glucuronate utilization 1 2
TF XylR Xylose Xylose utilization 3 4
TF YfmP Metal efflux 1 1
TF YhgD 1 1
TF YisR Metabolite transport 1 1
TF YodB/CatR Diamide; Quinone Oxidative stress response 4 7
TF YrkD Multidrug resistance 2 4
TF YtcD 2 2
TF YvbF/YvaV Osmotic stress response 2 2
TF YwbI Cell wall metabolism 2 2
TF YwrC Metal homeostasis 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 5 6
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