Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Bacillus pumilus ATCC 7061

Reference regulog properties
Source regulog: LexA - Bacillales
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus pumilus ATCC 7061
Orthologous TF(s) BAT_2337
Regulated genes 16
Built upon 206 sites [see more]
Predicted regulatory interactions in Bacillus pumilus ATCC 7061
Locus tag Position Score Sequence
Position: -102
Score: 5.1
Sequence: ACAAACATAGGTTCGA
Locus tag: BAT_2336
BAT_2336 -102 5.1 ACAAACATAGGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Pjdr2_2622
Ortholog function: Peptidoglycan-binding protein
Paenibacillus sp. JDR-2 Pjdr2_2622 -129 4.2 TAGAACCGGAGTTCGT
-113 5.1 ACAAACATAAGTTCTT
-97 4.8 AAAAACAAAAGTTCGC
-67 5 GCAAACATTTGTTCGT
-28 4.7 CAGAACAAACGTTCGG
Position: -73
Score: 5.1
Sequence: TCGAACCTATGTTTGT
Locus tag: BAT_2337
BAT_2337 -73 5.1 TCGAACCTATGTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response transcriptional repressor
Bacillus subtilis subsp. subtilis str. 168 BSU17850 -139 4.2 AGGAATGTTTGTTCGC
-102 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus amyloliquefaciens FZB42 RBAM_017650 -140 4.5 AAGAATGTTTGTTCGC
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus pumilus SAFR-032 BPUM_1686 -142 4.6 TAGAATGTGTGTTCGT
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus licheniformis DSM 13 BLi02032 -346 4.1 ATGAATTTGTGTTTGT
-141 4.2 CAGAATGTTTGTTCGG
-103 4.6 ACGAACAAATGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Anoxybacillus flavithermus WK1 Aflv_1506 -110 5.2 TAGAACATTTGTTTGT
-82 4.8 GAGAACTTTTGTTCGT
-53 5.2 TCGAACTTATGTTTGT
Geobacillus kaustophilus HTA426 GK1328 -136 4.5 TAGAATGTTTGTTCGC
-103 4.9 AGGAACATTTGTTTGT
-74 5.1 TCGAACCTATGTTTGT
Bacillus cereus ATCC 14579 BC3690 -70 5.2 TCGAACTTATGTTTGT
Bacillus halodurans C-125 BH2356 -107 4.7 AAGAACACTTGTTTGT
-78 4.9 TAGAACTTATGTTTGC
Bacillus clausii KSM-K16 ABC2167 -107 4.6 AGGAACAACTGTTCGT
-76 4.9 TAGAACTTATGTTTGC
Oceanobacillus iheyensis HTE831 OB1669 -142 4.8 CAGAACAATTGTTCTT
-107 4.6 CCGAACATATGATCTT
-78 4.2 TAGAACGAGTGTTTGC
Paenibacillus sp. JDR-2 Pjdr2_2621 -157 4.4 CCGAACGTTTGTTCTG
-118 5.1 ACGAACAAATGTTTGC
-72 5.1 AAGAACTTATGTTTGT
Position: -74
Score: 5
Sequence: TCGAACAAAAGTTCTT
Locus tag: BAT_2375
BAT_2375 -74 5 TCGAACAAAAGTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yozL
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU18950 -113 4.7 TCGAACTTTTGTTCTG
-83 4.1 AGGAACGTTTGTTCTG
Bacillus subtilis subsp. subtilis str. 168 BSU21510 -78 4.7 TCGAACTTTTGTTCTG
-48 4.4 AAGAACGTTTGTTCTG
Position: -88
Score: 5.2
Sequence: TCGAATATGTGTTCGT
Locus tag: BAT_2428
BAT_2428 -88 5.2 TCGAATATGTGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombination protein A
Bacillus subtilis subsp. subtilis str. 168 BSU16940 -87 4.7 CCGAATATGCGTTCGC
Bacillus amyloliquefaciens FZB42 RBAM_016780 -86 4.7 CCGAATATGCGTTCGC
Bacillus pumilus SAFR-032 BPUM_1598 -88 5.2 TCGAATATGTGTTCGT
Bacillus licheniformis DSM 13 BLi01918 -259 4.3 TCGAATTTCAGTTCGC
-86 4.8 TCGAATATGCGTTCGC
Anoxybacillus flavithermus WK1 Aflv_1530 34 4.7 ACGAACATCTATTCGT
Geobacillus kaustophilus HTA426 GK1295 -85 4.4 ACGAATGGACGTTCGT
Bacillus cereus ATCC 14579 BC3779 -85 5.1 TCGAATAAATGTTCGA
Bacillus halodurans C-125 BH2383 -343 4 AAAAATTCACGTTTGT
-121 4.9 GCGAATAAATGTTCGT
Bacillus clausii KSM-K16 ABC2199 -132 5.3 ACGAATAAATGTTCGT
Oceanobacillus iheyensis HTE831 OB1624 -82 4.4 AAGAACATCCATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3379 -297 3.9 GCGAACAATAATTTGT
-84 4.9 ACGAATGTATGTTCGA
Position: -30
Score: 5.2
Sequence: TAGAACATACGTTTGT
Locus tag: BAT_2897
BAT_2897 -30 5.2 TAGAACATACGTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xkdA
Ortholog function: Phage-like element PBSX protein xkdA
Bacillus pumilus SAFR-032 BPUM_1157 -30 5.2 TAGAACATACGTTTGT
Bacillus licheniformis DSM 13 BLi01317 -30 4.9 CAGAACATTCGTTCGA
Oceanobacillus iheyensis HTE831 OB0206 -435 4 TCAAATCAATGTTAGT
-31 4.8 CAGAACATACGTTCTC
Position: -40
Score: 5
Sequence: AAGAACATGTGTTCTA
Locus tag: BAT_3082
BAT_3082 -40 5 AAGAACATGTGTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjD
Ortholog function: Hypothetical protein
Bacillus pumilus SAFR-032 BPUM_0989 -34 4.5 AAGAACGTGTGTTCTA
Bacillus licheniformis DSM 13 BLi01120 -45 4.6 CAGAACAAATGTTCCT
Bacillus halodurans C-125 BH2963 -40 4.5 ACGAACACATGTTCCT
Oceanobacillus iheyensis HTE831 OB1178 -34 4.5 ACGAACATATGATCTG
Position: -46
Score: 4.8
Sequence: AAGAACGTTTGTTCGA
Locus tag: BAT_0323
BAT_0323 -46 4.8 AAGAACGTTTGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH1502
Ortholog function: Hypothetical protein
Bacillus pumilus SAFR-032 BPUM_2882 -75 4.4 CAGAACAAACGTTCCT
-46 4.8 AAGAACGTTTGTTCGA
Position: -82
Score: 4.9
Sequence: CCGAACTTTAGTTCGT
Locus tag: BAT_0581
BAT_0581 -82 4.9 CCGAACTTTAGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrB
Ortholog function: Excinuclease ABC subunit B
Bacillus subtilis subsp. subtilis str. 168 BSU35170 -93 4.9 CCGAACTTTAGTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_032310 -90 5 TCGAACTTTAGTTCGT
Bacillus pumilus SAFR-032 BPUM_3148 -82 4.9 CCGAACTTTAGTTCGT
Bacillus licheniformis DSM 13 BLi03759 -81 4.9 CCGAACTTTAGTTCGT
Anoxybacillus flavithermus WK1 Aflv_2547 -81 5.1 TAGAATATTTGTTCGT
Geobacillus kaustophilus HTA426 GK3086 -85 4.8 ACGAATATGAGTTCGC
Bacillus cereus ATCC 14579 BC5168 -86 4.9 CCGAATATCTGTTCGT
Bacillus halodurans C-125 BH3595 -91 4.9 CAAAACAAACGTTCGT
Bacillus clausii KSM-K16 ABC3059 -337 4.4 TAGTACGTATGTTCGT
Oceanobacillus iheyensis HTE831 OB2488 -70 4.7 ACGAATACTTGTTCGT
Position: -32
Score: 5.2
Sequence: TAGAACATAAGTTCGA
Locus tag: BAT_3469
BAT_3469 -32 5.2 TAGAACATAAGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pcrA
Ortholog function: ATP-dependent DNA helicase
Bacillus subtilis subsp. subtilis str. 168 BSU06610 -36 4.4 TAGAACGTATGTTTTG
Bacillus amyloliquefaciens FZB42 RBAM_007010 -32 5.2 TAGAACATATGTTTGA
Bacillus pumilus SAFR-032 BPUM_0625 -32 5.2 TAGAACATAAGTTCGA
Bacillus licheniformis DSM 13 BLi00715 -33 5.2 TAGAACATATGTTTGA
Anoxybacillus flavithermus WK1 Aflv_0246 -13 4.5 GAGAACATATGTTTTG
Geobacillus kaustophilus HTA426 GK0275 -31 4.8 TAGAACATATGTTTTG
Bacillus halodurans C-125 BH0648 -8 4.6 AAGAACAAGTGTTTGG
Position: -29
Score: 4.9
Sequence: CAGAACATACGTTCTA
Locus tag: BAT_1913
BAT_1913 -29 4.9 CAGAACATACGTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqjW
Ortholog function: DNA polymerase IV (EC 2.7.7.7)
Bacillus subtilis subsp. subtilis str. 168 BSU23710 -57 4.7 ACGAACATACTTTCGC
-29 4.9 GCGAACATAAGTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_021830 -28 4.3 CAGAACAAATGTTCCC
Bacillus pumilus SAFR-032 BPUM_2102 -29 4.9 CAGAACATACGTTCTA
Bacillus halodurans C-125 BH2741 -57 4 ACGAACAAATATTCAC
-30 5 CAGAACAAATGTTCTT
Bacillus clausii KSM-K16 ABC3826 -85 4.1 CCGAACGTCTATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3737 -66 4.2 GCGAACATACATTCGG
-37 4.7 ACGAACATACTTTCGC
Position: -169
Score: 4
Sequence: AAGAACGCATATTCGT
Locus tag: BAT_1956
BAT_1956 -169 4 AAGAACGCATATTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ypuD
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU23300 -171 4.7 CAGAACATAAATTCGT
Bacillus amyloliquefaciens FZB42 RBAM_021430 -177 4.7 CAGAACATAAATTCGT
Bacillus pumilus SAFR-032 BPUM_2062 -169 4 AAGAACGCATATTCGT
Bacillus licheniformis DSM 13 BLi02476 -177 4 CAGAATGTACATTCGT
Position: -62
Score: 5.2
Sequence: TAAAACAAATGTTCGT
Locus tag: BAT_1427
BAT_1427 -62 5.2 TAAAACAAATGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrC
Ortholog function: Excinuclease ABC subunit C
Bacillus subtilis subsp. subtilis str. 168 BSU28490 -59 5 AAAAACAAACGTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_025550 -62 5.2 AAAAACAAATGTTCGT
Bacillus pumilus SAFR-032 BPUM_2506 -62 5.2 TAAAACAAATGTTCGT
Bacillus cereus ATCC 14579 BC4520 -83 4.1 AAGAACGTATGTTGGG
Paenibacillus sp. JDR-2 Pjdr2_4818 -329 4.3 CGAAACATGCGTTCGA
Position: -73
Score: 4.5
Sequence: AAGAACATTTGTTTCT
Locus tag: BAT_1364
BAT_1364 -73 4.5 AAGAACATTTGTTTCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dnaE
Ortholog function: DNA polymerase III alpha subunit (EC 2.7.7.7)
Bacillus subtilis subsp. subtilis str. 168 BSU29230 -76 4.5 AAGAACATTTGTTTCT
Bacillus amyloliquefaciens FZB42 RBAM_026280 -69 4.5 AAGAACATTTGTTTCT
Bacillus pumilus SAFR-032 BPUM_2566 -73 4.5 AAGAACATTTGTTTCT
Bacillus licheniformis DSM 13 BLi03072 -74 4.5 AAGAACATTTGTTTCT
Oceanobacillus iheyensis HTE831 OB2177 -161 4.1 GCGAAAAAACGTTCTT
-63 4.1 CCGTATACATGTTCGT
Position: -145
Score: 4.4
Sequence: CAGAACGATTGTTCTT
Locus tag: BAT_1702
BAT_1702 -145 4.4 CAGAACGATTGTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sda
Ortholog function: Sporulation inhibitor sda
Bacillus subtilis subsp. subtilis str. 168 BSU25690 -127 4.4 CAGAACGATTGTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_023990 -144 4.4 CAGAACGATTGTTCTT
Bacillus pumilus SAFR-032 BPUM_2304 -145 4.4 CAGAACGATTGTTCTT
Bacillus licheniformis DSM 13 BLi02762 -145 4.2 CAGAACGATTGTTCTC
Anoxybacillus flavithermus WK1 Aflv_0810 -181 4 AAAAACCGACGTTTTT
-57 4.4 CAGAACGATTGTTCTT
Geobacillus kaustophilus HTA426 GK2527 -105 3.9 CAGAACGGTTGTTCTC