Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Bacillus pumilus ATCC 7061

Reference regulog properties
Source regulog: CodY - Bacillales
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus pumilus ATCC 7061
Orthologous TF(s) BAT_2523
Regulated genes 65
Built upon 445 sites [see more]
Predicted regulatory interactions in Bacillus pumilus ATCC 7061
Locus tag Position Score Sequence
Position: -83
Score: 4.7
Sequence: AATTGTGAGAAAATT
Locus tag: BAT_2321
BAT_2321 -83 4.7 AATTGTGAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citB
Ortholog function: Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Bacillus subtilis subsp. subtilis str. 168 BSU18000 -72 4.7 AATTGTGAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_017800 -77 4.7 AATTGTGAGAAAATT
Bacillus pumilus SAFR-032 BPUM_1699 -83 4.7 AATTGTGAGAAAATT
-52 4.6 ATTTTTCTGAGAATT
Bacillus licheniformis DSM 13 BLi02047 -78 4.7 AATTGTGAGAAAATT
Position: -183
Score: 4.6
Sequence: AATTCTCAGAAAAAT
Position: -152
Score: 4.7
Sequence: AATTTTCTCACAATT
Locus tag: BAT_2322
BAT_2322 -183 4.6 AATTCTCAGAAAAAT
-152 4.7 AATTTTCTCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sspO
Ortholog function: Small, acid-soluble spore protein O
Bacillus subtilis subsp. subtilis str. 168 BSU17990 -170 4.7 AATTTTCTCACAATT
Bacillus amyloliquefaciens FZB42 RBAM_017790 -169 4.7 AATTTTCTCACAATT
Bacillus pumilus SAFR-032 BPUM_1698 -183 4.6 AATTCTCAGAAAAAT
-152 4.7 AATTTTCTCACAATT
Bacillus licheniformis DSM 13 BLi02046 -171 4.7 AATTTTCTCACAATT
Oceanobacillus iheyensis HTE831 OB0266 -227 4.5 AATATTCTGTTAATT
Position: -61
Score: 5
Sequence: ATTTTTTAGAAAATT
Locus tag: BAT_2870
BAT_2870 -61 5 ATTTTTTAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dppA
Ortholog function: D-aminopeptidase (EC 3.4.11.-)
Bacillus subtilis subsp. subtilis str. 168 BSU12920 -43 4.5 ATTTGTTAGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_012770 -58 4.5 ATTTGTTAGAATATT
Bacillus pumilus SAFR-032 BPUM_1184 -55 5 ATTTTTTAGAAAATT
Bacillus licheniformis DSM 13 BLi01392 -61 4.5 ATTTGTTAGAATATT
Oceanobacillus iheyensis HTE831 OB2971 -96 4.5 AATATTCAGATTAAT
-41 4.5 AATTAATAGAAAATT
Position: -204
Score: 4.4
Sequence: AAAATACAGAAAATT
Position: -194
Score: 4.1
Sequence: AAATTTCAATTAATT
Locus tag: BAT_2947
BAT_2947 -204 4.4 AAAATACAGAAAATT
-194 4.1 AAATTTCAATTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metI
Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48)
Bacillus subtilis subsp. subtilis str. 168 BSU11870 -297 4.6 AATTATTAGAAATTT
-214 4.3 AACAATCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_011930 -314 4.6 AATTATTAGAAATTT
Bacillus pumilus SAFR-032 BPUM_1119 -297 4.4 AAAATACAGAAAATT
-287 4.1 AAATTTCAATTAATT
Bacillus licheniformis DSM 13 BLi01289 -164 4 AACAATCAGAATATT
Anoxybacillus flavithermus WK1 Aflv_2067 -228 4.4 ATTTTTCGGAAAATA
-200 4.6 AAAAATCAGAAAATT
Geobacillus kaustophilus HTA426 GK0866 -341 4.5 AAATTTAAAAAAATT
Bacillus cereus ATCC 14579 BC4253 -344 4.4 AATTTTTTAATAAAT
Paenibacillus sp. JDR-2 Pjdr2_4798 -6 4.4 AACTTTATGAAAATT
Position: -140
Score: 4.4
Sequence: AATTTTCTGTATTTT
Locus tag: BAT_2948
BAT_2948 -140 4.4 AATTTTCTGTATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycjH
Ortholog function: Putative acetyl esterase YjcH (EC 3.1.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU11860 -73 4.6 AAATTTCTAATAATT
Bacillus amyloliquefaciens FZB42 RBAM_011920 -70 4.6 AAATTTCTAATAATT
Bacillus pumilus SAFR-032 BPUM_1118 -140 4.4 AATTTTCTGTATTTT
Geobacillus kaustophilus HTA426 GK0865 -172 4.5 AATTTTTTTAAATTT
Position: -128
Score: 4.3
Sequence: AAAATTCAGAAAAAA
Locus tag: BAT_2997
BAT_2997 -128 4.3 AAAATTCAGAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA
Ortholog function: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Bacillus subtilis subsp. subtilis str. 168 BSU11430 -116 4.3 AATAATCAGAAAAGA
Bacillus amyloliquefaciens FZB42 RBAM_011430 -115 4.3 AATAATCAGAAAAGA
Position: -221
Score: 5
Sequence: AATTTTTAGACAATT
Locus tag: BAT_3090
BAT_3090 -221 5 AATTTTTAGACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: comK
Ortholog function: Competence transcription factor
Bacillus subtilis subsp. subtilis str. 168 BSU10420 -225 4.5 AATTTTTAGACAACT
Bacillus amyloliquefaciens FZB42 RBAM_010600 -88 4.2 TATATTCAAAAAAAA
Bacillus pumilus SAFR-032 BPUM_0978 -222 5 AATTTTTAGACAATT
Bacillus licheniformis DSM 13 BLi01119 -205 5.3 AATTTTTAGAAAATT
Oceanobacillus iheyensis HTE831 OB1177 -94 4.5 TTTATTCTAAAAATT
Position: -273
Score: 4.6
Sequence: TTTTTTCTGAAAAAT
Locus tag: BAT_3103
BAT_3103 -273 4.6 TTTTTTCTGAAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltT
Ortholog function: Proton/sodium-glutamate symport protein
Bacillus pumilus SAFR-032 BPUM_0965 -273 4.6 TTTTTTCTGAAAAAT
-140 4.4 TTTTTTCAAACAATT
Bacillus licheniformis DSM 13 BLi01100 -124 4.6 AATTTTCAATATATT
Position: -58
Score: 4.2
Sequence: AAGATTCTAACAATT
Locus tag: BAT_3113
BAT_3113 -58 4.2 AAGATTCTAACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhaA
Ortholog function: N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14)
Bacillus subtilis subsp. subtilis str. 168 BSU10070 -57 4.4 AATATTCAGACTTTT
Bacillus amyloliquefaciens FZB42 RBAM_010310 -57 4.2 AATCTTCTGACATTT
Bacillus pumilus SAFR-032 BPUM_0954 -58 4.2 AAGATTCTAACAATT
Bacillus licheniformis DSM 13 BLi01088 -50 4.9 AATTGTCATAAAATT
Oceanobacillus iheyensis HTE831 OB1157 -58 4.3 AATTATATGAATAAT
Position: -196
Score: 5
Sequence: AATTTTCAGATTATT
Locus tag: BAT_3165
BAT_3165 -196 5 AATTTTCAGATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhdT
Ortholog function: Hemolysins and related proteins containing CBS domains
Bacillus subtilis subsp. subtilis str. 168 BSU09590 -200 4.4 AAAAGTCTAAAAATT
Bacillus pumilus SAFR-032 BPUM_0906 -196 5 AATTTTCAGATTATT
Bacillus licheniformis DSM 13 BLi01028 -217 4.5 ATTTATCTAAATATT
Position: -38
Score: 4.4
Sequence: ACTTTTCTGAAACTT
Locus tag: BAT_0262
BAT_0262 -38 4.4 ACTTTTCTGAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupN
Ortholog function: Guanosine ABC transport system, substrate-binding component
Bacillus subtilis subsp. subtilis str. 168 BSU31540 -102 4.9 TATTATCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_028640 -244 4.5 TATTTTTTAAAAAAT
-243 4.5 ATTTTTTAAAAAATA
Bacillus pumilus SAFR-032 BPUM_2823 -233 4.5 ATTTTTTTAAAAATA
Position: -243
Score: 5.2
Sequence: AATTATCAGAAAATT
Locus tag: BAT_0310
BAT_0310 -243 5.2 AATTATCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yuiB
Ortholog function: Hypothetical membrane protein
Bacillus subtilis subsp. subtilis str. 168 BSU32080 -36 4.9 TATTATCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_029130 -34 4.9 TATTATCAGAAAATT
Bacillus licheniformis DSM 13 BLi03390 -35 4.9 TATTATCAGAAAATT
Anoxybacillus flavithermus WK1 Aflv_2400 -35 5.2 AATTATCTGAAAATT
Geobacillus kaustophilus HTA426 GK2950 -54 4.4 TTTTTACAGAAAATT
Bacillus halodurans C-125 BH3405 -47 4.3 AAAATTCTGATAATA
Position: -185
Score: 4.8
Sequence: AATATTTTGAAAATA
Locus tag: BAT_0329
BAT_0329 -185 4.8 AATATTTTGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hom
Ortholog function: Homoserine dehydrogenase (EC 1.1.1.3)
Bacillus subtilis subsp. subtilis str. 168 BSU32260 -183 4.5 AATAATTAGAAAATA
Bacillus amyloliquefaciens FZB42 RBAM_029370 -185 4.8 AATATTTAGAAAATA
Bacillus pumilus SAFR-032 BPUM_2888 -185 4.8 AATATTTTGAAAATA
Anoxybacillus flavithermus WK1 Aflv_2414 -88 4.7 TTTTTTTAGAAAATT
Position: -43
Score: 5
Sequence: AATTTTCTGAATATA
Locus tag: BAT_0481
BAT_0481 -43 5 AATTTTCTGAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: opuCA
Ortholog function: Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA
Bacillus subtilis subsp. subtilis str. 168 BSU33830 -42 5 ACTTTTCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_031100 -41 4.7 ACTTTTCAGAAAAAT
Bacillus pumilus SAFR-032 BPUM_3043 -43 5 AATTTTCTGAATATA
Position: -109
Score: 4.6
Sequence: GATTTTTTGAAAATT
Locus tag: BAT_0499
BAT_0499 -109 4.6 GATTTTTTGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lutR
Ortholog function: Transcriptional regulator of L-lactate utilization, GntR family
Bacillus pumilus SAFR-032 BPUM_3062 -109 4.6 GATTTTTTGAAAATT
Anoxybacillus flavithermus WK1 Aflv_2010 -60 4.4 AATATTTAAAAATTT
Bacillus halodurans C-125 BH1835 -123 4.4 ATTTATCAGTAAATT
Position: -80
Score: 4.7
Sequence: AATTTTCAGAAATAT
Locus tag: BAT_3402
BAT_3402 -80 4.7 AATTTTCAGAAATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfmB
Ortholog function: Hypothetical protein
Bacillus pumilus SAFR-032 BPUM_0697 -80 4.7 AATTTTCTGAAATAT
Bacillus licheniformis DSM 13 BLi00778 -83 4.6 AATTTTCAGACAAAA
Position: -193
Score: 5.2
Sequence: AATTTTCTGAAAATA
Locus tag: BAT_3448
BAT_3448 -193 5.2 AATTTTCTGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gatC
Ortholog function: Aspartyl-tRNA(Asn) amidotransferase subunit C (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit C (EC 6.3.5.7)
Bacillus subtilis subsp. subtilis str. 168 BSU06670 -172 5 AATATTCAGAAAAAT
Bacillus amyloliquefaciens FZB42 RBAM_007070 -163 4.5 AATTTTCTGACATAT
Bacillus pumilus SAFR-032 BPUM_0644 -182 4.9 AATTTTCTGATAAAT
Bacillus licheniformis DSM 13 BLi00730 -167 5.1 AATATTCTGAATATT
Position: -245
Score: 5.2
Sequence: TATTTTCAGAAAATT
Locus tag: BAT_3449
BAT_3449 -245 5.2 TATTTTCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: opuE
Ortholog function: Sodium/proline symporter
Bacillus subtilis subsp. subtilis str. 168 BSU06660 -256 5 ATTTTTCTGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_007060 -273 4.5 ATATGTCAGAAAATT
Bacillus pumilus SAFR-032 BPUM_0643 -231 4.9 ATTTATCAGAAAATT
Bacillus licheniformis DSM 13 BLi00728 -289 5.1 AATATTCAGAATATT
Bacillus cereus ATCC 14579 BC3644 -214 5.3 AATTTTCTGAATATT
Position: -249
Score: 4.7
Sequence: AATTATCAGAATAAT
Position: -60
Score: 4.2
Sequence: AAAATTTAAAATATT
Position: -51
Score: 4.3
Sequence: AATATTCTAAAAACA
Locus tag: BAT_3524
BAT_3524 -249 4.7 AATTATCAGAATAAT
-60 4.2 AAAATTTAAAATATT
-51 4.3 AATATTCTAAAAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gabP
Ortholog function: Gamma-aminobutyrate (GABA) permease
Bacillus subtilis subsp. subtilis str. 168 BSU06310 -48 4.7 AATTATCATAATATT
Bacillus amyloliquefaciens FZB42 RBAM_006710 -160 4.3 AAATAACAGAAAATT
-45 4 ACTTGTCGGAATATT
Bacillus pumilus SAFR-032 BPUM_0543 -231 4.5 AAATTTCAGAATAAT
-33 4.3 AATATTCTAAAAACA
Position: -41
Score: 4.5
Sequence: AAAATTCTTAAAATT
Locus tag: BAT_3564
BAT_3564 -41 4.5 AAAATTCTTAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltP
Ortholog function: Proton/glutamate symport protein @ Proton/aspartate symport protein
Bacillus amyloliquefaciens FZB42 RBAM_002750 -229 4.4 AATTATCAAAATTTT
Bacillus pumilus SAFR-032 BPUM_0501 -44 4.5 AAAATTCTTAAAATT
Position: -215
Score: 4.7
Sequence: AATTTTCCGAAAATA
Position: -193
Score: 4.4
Sequence: AATAGTATGAAAATA
Locus tag: BAT_3657
BAT_3657 -215 4.7 AATTTTCCGAAAATA
-193 4.4 AATAGTATGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltO
Ortholog function: Proton/sodium-glutamate symport protein
Bacillus pumilus SAFR-032 BPUM_0421 -252 5 AATTTTCTAAAAATA
-230 4.4 AATAGTATGAAAATA
Anoxybacillus flavithermus WK1 Aflv_1459 -140 4.9 ATTTTTCTGACAATT
Bacillus cereus ATCC 14579 BC1389 -88 4.6 AAAATTCAGAAAATA
Bacillus halodurans C-125 BH3820 -258 4.4 TATTTTTTGAAAAAA
Bacillus clausii KSM-K16 ABC3908 -77 4.3 AATTTTTAATAAAAT
Oceanobacillus iheyensis HTE831 OB0021 -36 4.9 AATTTTCTGAAAAAA
Position: -186
Score: 4.5
Sequence: AATTTTAAATAAATT
Locus tag: BAT_3741
BAT_3741 -186 4.5 AATTTTAAATAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yclF
Ortholog function: POT family proton (H+)-dependent oligopeptide transporter
Bacillus pumilus SAFR-032 BPUM_0343 -187 4.5 AATTTTAAATAAATT
Geobacillus kaustophilus HTA426 GK2020 -118 4.4 TTTTTTCTTAATATT
-68 4.4 ATTTTTTTGACAATA
Position: -258
Score: 3.9
Sequence: AATATAGAAAATATT
Locus tag: BAT_3766
BAT_3766 -258 3.9 AATATAGAAAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: srfAA
Ortholog function: Surfactin synthetase subunit 1
Bacillus subtilis subsp. subtilis str. 168 BSU03480 -440 4.4 ATTTTTCTGTAAATA
Bacillus amyloliquefaciens FZB42 RBAM_003650 -398 4.4 AATATTTTTAAAAAT
Bacillus pumilus SAFR-032 BPUM_0319 -366 4 TATTTTCGGTAAATA
Bacillus pumilus SAFR-032 BPUM_0322 -366 4 TATTTTCGGTAAATA
Bacillus pumilus SAFR-032 BPUM_0323 -366 4 TATTTTCGGTAAATA
Bacillus licheniformis DSM 13 BLi00401 -418 4.2 ATTTTTTTGTCAATT
Position: -43
Score: 4.6
Sequence: TATTTTTTGAAAAGT
Locus tag: BAT_0731
BAT_0731 -43 4.6 TATTTTTTGAAAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spoIIQ
Ortholog function: Stage II sporulation protein related to metaloproteases (SpoIIQ)
Bacillus pumilus SAFR-032 BPUM_3302 -43 4.6 TATTTTTTGAAAAGT
Position: -35
Score: 4.3
Sequence: AATTTTCAAATAATC
Locus tag: BAT_0944
BAT_0944 -35 4.3 AATTTTCAAATAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybgE
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Bacillus subtilis subsp. subtilis str. 168 BSU02390 -118 4.9 AATATTCTGAAATTT
-38 4.6 AATATTTAAACAATT
Bacillus amyloliquefaciens FZB42 RBAM_002760 -152 4.4 AAAATTTTGATAATT
Bacillus amyloliquefaciens FZB42 RBAM_035750 -48 4.3 TATTTTCAAATAAGT
Bacillus pumilus SAFR-032 BPUM_3500 -226 4.4 AATTGTCAGATTAAT
Position: -227
Score: 4.4
Sequence: TTTATTAAGAAAATT
Locus tag: BAT_1006
BAT_1006 -227 4.4 TTTATTAAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metE2
Ortholog function: Methionine synthase II (cobalamin-independent)
Bacillus subtilis subsp. subtilis str. 168 BSU38950 -225 4.7 AATATTAAGATAATT
Bacillus amyloliquefaciens FZB42 RBAM_036120 -188 4.4 TTTATTCTGAAAAAT
Bacillus pumilus SAFR-032 BPUM_3562 -227 4.4 TTTATTAAGAAAATT
Position: -111
Score: 4.4
Sequence: ATTATTCGGAAAATT
Locus tag: BAT_1860
BAT_1860 -111 4.4 ATTATTCGGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spo0A
Ortholog function: Stage 0 sporulation two-component response regulator (Spo0A)
Bacillus pumilus SAFR-032 BPUM_2154 -111 4.4 ATTATTCGGAAAATT
Anoxybacillus flavithermus WK1 Aflv_0953 -120 4.6 TATTTTATGAAAAAT
Geobacillus kaustophilus HTA426 GK2387 -96 4.7 TATTTTTTGAAAAAT
Bacillus cereus ATCC 14579 BC4170 -84 4.7 AATTTTCACACAATT
Bacillus halodurans C-125 BH2773 -89 5 AATTTTTTTAAAATT
Position: -45
Score: 4.5
Sequence: AATTATCAGATATTT
Locus tag: BAT_1977
BAT_1977 -45 4.5 AATTATCAGATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: serA
Ortholog function: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Bacillus subtilis subsp. subtilis str. 168 BSU23070 -44 4.5 AATTATCAGATATTT
Bacillus amyloliquefaciens FZB42 RBAM_021220 -44 4.5 AATTATCAGATATTT
Bacillus pumilus SAFR-032 BPUM_2039 -45 4.5 AATTATCAGATATTT
Bacillus licheniformis DSM 13 BLi02446 -43 4.5 AATTATCAGATATTT
Anoxybacillus flavithermus WK1 Aflv_1055 -47 4.8 AATTATCAGAAATTT
Geobacillus kaustophilus HTA426 GK2247 -86 4.8 AATTATCAGAAATTT
Position: -64
Score: 4.8
Sequence: TATTTTTTGAATATT
Locus tag: BAT_2113
BAT_2113 -64 4.8 TATTTTTTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ilvA
Ortholog function: Threonine dehydratase biosynthetic (EC 4.3.1.19)
Bacillus subtilis subsp. subtilis str. 168 BSU21770 -68 4.8 TATTTTTTGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_019920 -75 4.4 AATTGTCTTATTATT
-67 4.5 TATTATTTGAATATT
Bacillus pumilus SAFR-032 BPUM_1911 -64 4.8 TATTTTTTGAATATT
Bacillus licheniformis DSM 13 BLi02315 -97 4.6 AATATTCTGTAAATA
Anoxybacillus flavithermus WK1 Aflv_1453 -99 5 ATTTTTTAGAAAATT
Position: -27
Score: 4.4
Sequence: AAATTACAAAAAATT
Locus tag: BAT_2139
BAT_2139 -27 4.4 AAATTACAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yoyD
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU19579 -80 4.4 TTTTTTCTAATAATT
Bacillus pumilus SAFR-032 BPUM_1877 -27 4.4 AAATTACAAAAAATT
Bacillus licheniformis DSM 13 BLi02277 -81 4.4 TTTTTTCTAATAATT
Position: -62
Score: 4.9
Sequence: TTTTTTCAGAAAATT
Locus tag: BAT_2157
BAT_2157 -62 4.9 TTTTTTCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yocS
Ortholog function: Sodium-dependent transporter
Bacillus subtilis subsp. subtilis str. 168 BSU19350 -92 5 ATTATTCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_019100 -169 4.4 AATTGTAAGAATATA
Bacillus licheniformis DSM 13 BLi02258 -66 4.8 ATTATTCAGAATATT
Position: -165
Score: 4.7
Sequence: AATTGTCTAATAATT
Locus tag: BAT_1462
BAT_1462 -165 4.7 AATTGTCTAATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dat
Ortholog function: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Bacillus pumilus SAFR-032 BPUM_2473 -166 4.7 AATTGTCTAATAATT
-54 4.6 AAGTGTCTGAAAATT
Bacillus licheniformis DSM 13 BLi02962 -192 4.7 AATTGTCTAATAATT
Anoxybacillus flavithermus WK1 Aflv_0590 -136 4.8 AATAATCAAAAAATT
-79 4.7 AATTTTCAAATAAAT
Bacillus cereus ATCC 14579 BC1396 -167 4.4 AATTTTTTGACTTTT
-88 5.3 AATTTTCTAAAAATT
Position: -161
Score: 4.5
Sequence: AAATTTCGGAAAATT
Position: -94
Score: 4.5
Sequence: AATTGTCAATAAATT
Locus tag: BAT_1431
BAT_1431 -161 4.5 AAATTTCGGAAAATT
-94 4.5 AATTGTCAATAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase, cytochrome b subunit
Bacillus amyloliquefaciens FZB42 RBAM_025520 -98 4.5 AATTGTCAATAAATT
Bacillus pumilus SAFR-032 BPUM_2503 -161 4.5 AAATTTCGGAAAATT
-94 4.5 AATTGTCAATAAATT
Bacillus licheniformis DSM 13 BLi02994 -184 4.5 AATTTTCAAAAATAT
-165 4.9 AAATTTTAGAAAATT
Position: -201
Score: 4.5
Sequence: AATTTATTGACAATT
Position: -134
Score: 4.5
Sequence: AATTTTCCGAAATTT
Locus tag: BAT_1430
BAT_1430 -201 4.5 AATTTATTGACAATT
-134 4.5 AATTTTCCGAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yslB
Ortholog function: Predicted hydrocarbon binding protein (V4R domain)
Bacillus amyloliquefaciens FZB42 RBAM_025530 -213 4.5 AATTTATTGACAATT
Bacillus pumilus SAFR-032 BPUM_2504 -201 4.5 AATTTATTGACAATT
-134 4.5 AATTTTCCGAAATTT
Bacillus licheniformis DSM 13 BLi02995 -151 4.9 AATTTTCTAAAATTT
-132 4.5 ATATTTTTGAAAATT
Position: -210
Score: 4.3
Sequence: AAATGTCTGATTATT
Locus tag: BAT_1374
BAT_1374 -210 4.3 AAATGTCTGATTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: citZ
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -224 4.3 AAATGTCTGATTATT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -224 4.2 ATTAATCAGATTATT
Bacillus pumilus SAFR-032 BPUM_2556 -210 4.3 AAATGTCTGATTATT
Bacillus licheniformis DSM 13 BLi03062 -225 4.5 AAATGTCTGATAATT
Anoxybacillus flavithermus WK1 Aflv_0504 -209 4.3 AAAAGTCTGATAATT
Geobacillus kaustophilus HTA426 GK2736 -201 4.3 AAAAGTCTGATAATT
Oceanobacillus iheyensis HTE831 OB2168 -222 4.3 AAATATTAAAAAATT
Position: -206
Score: 4.7
Sequence: ATTATTCAGAAAATA
Locus tag: BAT_1351
BAT_1351 -206 4.7 ATTATTCAGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29470 -182 4 atgTgTCtGAaAata
Bacillus amyloliquefaciens FZB42 RBAM_026400 -172 4.6 ATTTATCAGAAAATA
Bacillus pumilus SAFR-032 BPUM_2579 -206 4.7 ATTATTCAGAAAATA
Bacillus licheniformis DSM 13 BLi03086 -194 4.8 TATATTCAGAAAATA
Position: -157
Score: 4.6
Sequence: AATAGTTTGAATATT
Locus tag: BAT_1327
BAT_1327 -157 4.6 AATAGTTTGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcI
Ortholog function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Bacillus pumilus SAFR-032 BPUM_2600 -158 4.6 AATAGTTTGAATATT
Bacillus cereus ATCC 14579 BC4645 -58 4.7 AATTAACTGAAAATT
Oceanobacillus iheyensis HTE831 OB2643 -96 4.5 TATAATCAGAATATT
Position: -162
Score: 5
Sequence: AATATTCTGACAATT
Position: -85
Score: 4.9
Sequence: CATTTTCAGAAAATT
Locus tag: BAT_1324
BAT_1324 -162 5 AATATTCTGACAATT
-85 4.9 CATTTTCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iscS
Ortholog function: Cysteine desulfurase (EC 2.8.1.7)
Bacillus subtilis subsp. subtilis str. 168 BSU29590 -165 4.6 AATATTCTGTCAATT
-150 4.7 AATTGTCAGATAATA
Bacillus amyloliquefaciens FZB42 RBAM_026520 -167 4.6 AATATTCTGTCAATT
-152 4.7 AATTGTCAGATAATA
Bacillus licheniformis DSM 13 BLi03101 -165 4.8 AATTTTCTGTCAATT
Position: -44
Score: 4.5
Sequence: AATTAACAGAATATT
Locus tag: BAT_1322
BAT_1322 -44 4.5 AATTAACAGAATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: braB
Ortholog function: Branched-chain amino acid transport system carrier protein
Bacillus subtilis subsp. subtilis str. 168 BSU29600 -59 4.7 TATTATCTGACAATT
-44 4.6 AATTGACAGAATATT
Bacillus amyloliquefaciens FZB42 RBAM_026530 -56 4.7 TATTATCTGACAATT
-41 4.6 AATTGACAGAATATT
Bacillus pumilus SAFR-032 BPUM_2605 -44 4.5 AATTAACAGAATATT
Position: -52
Score: 5
Sequence: ATTATTCAGAAAATT
Locus tag: BAT_3833
BAT_3833 -52 5 ATTATTCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycgA
Ortholog function: Putative integral inner membrane protein
Bacillus amyloliquefaciens FZB42 RBAM_003260 -182 4.6 TATTTTCTGAATAGT
Bacillus pumilus SAFR-032 BPUM_0276 -52 5 ATTATTCTGAAAATT
Position: -116
Score: 5
Sequence: AATTTTCTGAATAAT
Locus tag: BAT_3834
BAT_3834 -116 5 AATTTTCTGAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: amhX
Ortholog function: Amidohydrolase amhX (EC 3.5.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU03010 -116 4.3 ATTATTCTGAATAGT
Bacillus amyloliquefaciens FZB42 RBAM_003250 -104 4.6 ACTATTCAGAAAATA
Bacillus pumilus SAFR-032 BPUM_0275 -116 5 AATTTTCAGAATAAT
Position: -131
Score: 4.5
Sequence: TATTTTCTAACTATT
Locus tag: BAT_3976
BAT_3976 -131 4.5 TATTTTCTAACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: murQ
Ortholog function: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.-.-)
Bacillus subtilis subsp. subtilis str. 168 BSU01700 -95 4.4 AAATTTCAAAAATTT
-48 4.6 AATATACTGAATATT
Bacillus pumilus SAFR-032 BPUM_0158 -131 4.5 TATTTTCTAACTATT
Bacillus licheniformis DSM 13 BLi00191 -53 4.8 AATATACTGAAAATT
Position: -93
Score: 4.6
Sequence: AATTTTTAAAAAACT
Locus tag: BAT_1308
BAT_1308 -93 4.6 AATTTTTAAAAAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuA
Ortholog function: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Bacillus subtilis subsp. subtilis str. 168 BSU29690 -97 4.6 AATTTTTAAAATATA
Bacillus amyloliquefaciens FZB42 RBAM_026810 -100 4.6 AATTTTTAAAATATA
Bacillus pumilus SAFR-032 BPUM_2617 -93 4.6 AATTTTTAAAAAACT
Bacillus licheniformis DSM 13 BLi03120 -96 4.8 AATTTTTAAAAAATA
Anoxybacillus flavithermus WK1 Aflv_0461 -101 5.1 AATTTTTAAAAAATT
Geobacillus kaustophilus HTA426 GK2807 -112 4.9 AATTTTTAAAATATT
-87 4.4 ACTTTTTTGAAATTT
Bacillus cereus ATCC 14579 BC4660 -110 4.8 AATTTTCAGTATATT
Oceanobacillus iheyensis HTE831 OB2221 -85 4.6 AAATTTCAAAAAATA
Position: -77
Score: 4.6
Sequence: AGTTTTTTAAAAATT
Locus tag: BAT_1309
BAT_1309 -77 4.6 AGTTTTTTAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -78 4.6 TATATTTTAAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_026800 -73 4.6 TATATTTTAAAAATT
Bacillus pumilus SAFR-032 BPUM_2616 -77 4.6 AGTTTTTTAAAAATT
Bacillus licheniformis DSM 13 BLi03119 -74 4.8 TATTTTTTAAAAATT
Anoxybacillus flavithermus WK1 Aflv_0462 -77 5.1 AATTTTTTAAAAATT
Geobacillus kaustophilus HTA426 GK2806 -102 4.4 AAATTTCAAAAAAGT
-77 4.9 AATATTTTAAAAATT
Bacillus cereus ATCC 14579 BC4659 -69 4.8 AATATACTGAAAATT
Position: -36
Score: 5
Sequence: AATTTTTAGAAAATA
Locus tag: BAT_4151
BAT_4151 -36 5 AATTTTTAGAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yaaC
Ortholog function: Conserved hypothetical protein
Bacillus pumilus SAFR-032 BPUM_0503 -36 5 AATTTTTAGAAAATA
Bacillus licheniformis DSM 13 BLi00013 -36 5 AATTTTTAGAAAATA
Bacillus cereus ATCC 14579 BC0012 -30 4.7 AATTTTTAGACAATA
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