Regulons of Geobacter uraniumreducens Rf4

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	BirA	Biotin	Biotin biosynthesis	2	2
TF	Fur	Iron ion, (Fe2+)	Iron homeostasis	5	4
TF	Gbem_0803			3	1
TF	HcpR	Nitric oxide	Nitrosative stress response	10	7
TF	HrcA	Heat shock	Heat shock response	3	3
TF	IscR	Iron-sulfur cluster redox state	Iron-sulfur cluster biogenesis	2	1
TF	LexA	DNA damage	SOS response	3	2
TF	LldR	L-lactate	Lactate utilization	4	6
TF	ModE	Molybdate	Molybdenum homeostasis	2	1
TF	NikR	Nickel ion, (Ni2+)	Nickel homeostasis	2	2
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	2	2
TF	NtrC	Phosphorylated NtrB, signal histidine kinase	Nitrogen assimilation	5	6
TF	SahR	S-adenosylhomocysteine	Methionine metabolism	1	1
TF	SdhR2		Tricarboxylic acid cycle	11	9
TF	Zur	Zinc ion, (Zn2+)	Zinc homeostasis	1	1
RNA	MOCO_RNA_motif	Molybdenum	Molybdopterin biosynthesis; Tungsten homeostasis; Molybdenum homeostasis	5	3
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	2	2

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --