Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Profile of regulator SAH_riboswitch in Comamonadaceae

Properties
Regulator family: RF01057
Regulation mode:
Biological process: Methionine metabolism
Effector: S-adenosylhomocysteine
Regulog: SAH_riboswitch - Comamonadaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Acidovorax avenae subsp. citrulli AAC00-1
Aave_0214 metH -143 34.6 CCTCCGAGGAGCGTTGCAGCGGCCCGTCCGCCGGCGTCGGTCACGACCGCCGCGGGCGCGCCGTCAGGCTCGGAGCCCGTGCCGAAGAATCGATGCCAACGACGCTCACCTGTCCT
Aave_4060 ahcY -165 42.5 CCCTACCGAGGAGCGTTGCAGCGCCCTGATTCCCTGTCGCCCAGGGGGCAGCAGGACGCGAGGCTCGGGTCATCATTTTGCAACGACGCTCGCCCACG
Acidovorax sp. JS42
Ajs_0147 metH -202 25.9 TTCCCGAGGAGCGCTGCAGCGCCCGCCGGCCGGGGCCGCACAGGCGGCTCGCGCGTGGCGGCGTCAGGCTCGGGCCCACCGCGGCATGCAGCCGTGCGTGTACCAACGGCGCTCACCTGATGT
Ajs_0618 ahcY -147 60 TTTCCGAGGAGCGTTGCAGCGTCCCCAGCACGGCGGGGCGCGAGGCTCGGAAGTCATACCCAGCAACGACGCTCACCCACGCC
Comamonas testosteroni KF-1
CtesDRAFT_4006 metH -145 51.8 CCCCCGAGGAGCGCTGCAGCCGGTCATCACAGAGATGTTTGACCCGTCAGGCTCGGGGTGGCAGATCCGGTTGGCGATCTGCCCGTACCCACAACGGCGCTCACCTGTTCT
CtesDRAFT_4458 ahcY -171 45.2 CATCCGAGGAGCGTTGCAGCGTTCCCCAGCCAGCCATGAGCTGGCCTGCGCGGGGCGTGAGGCTCGGATTTCATCCCGCAACGACGCTCGCCCACGCT
Delftia acidovorans SPH-1
Daci_0232 metH -152 23.3 GCCCGAGGAGCGTTGCAGCGCGGCACCCGCCCATCCGTACACCGGATCGCGTGCCGCGTCAGGCTTGGGCCAGGT
Daci_5919 ahcY -156 52.2 CCTCTCCGAGGAGCGTTGCAGCGGCCCCCACACATCAGGCGTGGTCGCGAGGCTCGGAGTCATACCTGCAACGACGCTCGCCCACG
Leptothrix cholodnii SP-6
Lcho_0119 ahcY -175 55.5 CTGTTTCGAGGAGCGTTGCAAGGCCGGTGGCTCCCACCCGCCCCAGGCTCGAAACCCTCACAAGGCAACGGCGCTCACCCGCT
Lcho_3270 metH -155 45.1 TCCCCGAGGAGCGTTGCGACGGCGTGCGATCACGCTGCCAGGCTCGGGGCCACGCCACACATGTGGCGCTGCCAACGACGCTCACCCCCGCC
Methylibium petroleiphilum PM1
Mpe_A3286 ahcY -148 63.1 CTTTCGAGGAGCGTTGCAACTCCCGCCCGGGAGCCAGGCTCGAAAGTCATCCCCCGATGCAACGGCGCTCACCCGCAGG
Mpe_A0168 metH -163 41.2 TGCTCGAGGAGCGTTGCGACGGTTGCCCAGGCTTTGGGACGACCGCCAGGCTCGGGCCGGCGGCACCGCGAGGGCTGCCCTGCAACGGCGCTCACCCCTCCG
Polaromonas naphthalenivorans CJ2
Pnap_0117 metH -106 50 AACTCAAGGAGCGTTGCAGCAAAACATCCGTTTTGTCAGGCTTGGGTAAACAGGGCCGCATCATCCCCTTTTAGCAACGACGCTCACCTTTATT
Pnap_0489 ahcY -176 50.2 CTCCTGAGGAGCGTTGCAACCCACGGCATGTGGTCTAGGCTCAGGACTTCTATTTGCAACCACGCTCACCCGCATG
Polaromonas sp. JS666
Bpro_0174 metH -110 48.5 AACCCAAGGAGCGTTGCAGCGAAGCATTGATTCGTCAGGCTTGGGTCACCGGCGTGTTCCCCGAAGCGCCTGCAGCAACGACGCTCACCTTGAGC
Bpro_4132 ahcY -173 52.7 GCTTCCTGAGGAGCGTTGCAACCCACATCACGTGGACCAGGCTCAGGACTTCATTGCAACCACGCTCACCCGCA
Rhodoferax ferrireducens DSM 15236
Rfer_0652 ahcY -187 43.3 TTTCCGAGGAGCGTTGCAGCTCGATATCCTGGCCAGAAACCGGCAGGGGACGCGAGTGAGGCTCGGAGCACGCGGCCCTGATGGGGCTGCGACAGTCAACGGCGCTCACCCACTGG
Rfer_0466 metH -93 55.6 CTTCCAAGGAGCGTTGCAGTCGGCCACATGGCCGGTCAGGCTTGGATGACCCCAACGACGCTCACCTGATCC
Variovorax paradoxus S110
Vapar_0171 metH -133 35.5 TTCCAAGGAGCGTTGCAGCGGCGGCCCGCATCAAGAGGCCCGCCGTCAGGCTTGGAAGGCG
Vapar_4683 ahcY -136 45.1 CGGTTCCGAGGAGCGTTGCAGCGCCGCCAGGCGTGAGGCTCGGACCACATCGCAACCACGCTCACCCGCT
Verminephrobacter eiseniae EF01-2
Veis_0656 ahcY -155 46.2 GCTCCGAGGAGCGTTGCAGCGCCTCCCACCGGCAGGGCCGGCGGGGCGTGAGGCTCGGGCATCATCTGGCAACGACGCTCATCCACA
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