Regulog SAH_riboswitch - Comamonadaceae
| Regulator type: | RNA regulatory element |
| Name: | SAH_riboswitch |
| RFAM: | RF01057 |
| Regulation mode: | |
| Biological process: | Methionine metabolism |
| Effector: | S-adenosylhomocysteine |
| Phylum: | Proteobacteria/Beta |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By RNA motif - SAH_riboswitch
- By effector - S-adenosylhomocysteine
- By pathway - Methionine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | 4 | 2 |
| Acidovorax sp. JS42 | 4 | 2 |
| Comamonas testosteroni KF-1 | 4 | 2 |
| Delftia acidovorans SPH-1 | 4 | 2 |
| Leptothrix cholodnii SP-6 | 4 | 2 |
| Methylibium petroleiphilum PM1 | 4 | 2 |
| Polaromonas naphthalenivorans CJ2 | 4 | 2 |
| Polaromonas sp. JS666 | 4 | 2 |
| Rhodoferax ferrireducens DSM 15236 | 4 | 2 |
| Variovorax paradoxus S110 | 4 | 2 |
| Verminephrobacter eiseniae EF01-2 | 3 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| metH |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -143 score = 34.64 sequence = CCTCCGAGGAGCGTT... Gene: Aave_0214: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Acidovorax sp. JS42 Site: position = -202 score = 25.89 sequence = TTCCCGAGGAGCGCT... Gene: Ajs_0147: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Comamonas testosteroni KF-1 Site: position = -145 score = 51.79 sequence = CCCCCGAGGAGCGCT... Gene: CtesDRAFT_4006: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Delftia acidovorans SPH-1 Site: position = -152 score = 23.32 sequence = GCCCGAGGAGCGTTG... Gene: Daci_0232: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Leptothrix cholodnii SP-6 Site: position = -155 score = 45.12 sequence = TCCCCGAGGAGCGTT... Gene: Lcho_3270: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Methylibium petroleiphilum PM1 Site: position = -163 score = 41.2 sequence = TGCTCGAGGAGCGTT... Gene: Mpe_A0168: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Polaromonas naphthalenivorans CJ2 Site: position = -106 score = 49.98 sequence = AACTCAAGGAGCGTT... Gene: Pnap_0117: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Polaromonas sp. JS666 Site: position = -110 score = 48.54 sequence = AACCCAAGGAGCGTT... Gene: Bpro_0174: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -93 score = 55.57 sequence = CTTCCAAGGAGCGTT... Gene: Rfer_0466: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Variovorax paradoxus S110 Site: position = -133 score = 35.52 sequence = TTCCAAGGAGCGTTG... Gene: Vapar_0171: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Veis_0014: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
| CRON 2. | ||||||||||||
| ahcY |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -165 score = 42.53 sequence = CCCTACCGAGGAGCG... Gene: Aave_4060: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Acidovorax sp. JS42 Site: position = -147 score = 60.01 sequence = TTTCCGAGGAGCGTT... Gene: Ajs_0618: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Comamonas testosteroni KF-1 Site: position = -171 score = 45.25 sequence = CATCCGAGGAGCGTT... Gene: CtesDRAFT_4458: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Delftia acidovorans SPH-1 Site: position = -156 score = 52.24 sequence = CCTCTCCGAGGAGCG... Gene: Daci_5919: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Leptothrix cholodnii SP-6 Site: position = -175 score = 55.51 sequence = CTGTTTCGAGGAGCG... Gene: Lcho_0119: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Methylibium petroleiphilum PM1 Site: position = -148 score = 63.09 sequence = CTTTCGAGGAGCGTT... Gene: Mpe_A3286: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Polaromonas naphthalenivorans CJ2 Site: position = -176 score = 50.19 sequence = CTCCTGAGGAGCGTT... Gene: Pnap_0489: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Polaromonas sp. JS666 Site: position = -173 score = 52.7 sequence = GCTTCCTGAGGAGCG... Gene: Bpro_4132: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -187 score = 43.26 sequence = TTTCCGAGGAGCGTT... Gene: Rfer_0652: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Variovorax paradoxus S110 Site: position = -136 score = 45.06 sequence = CGGTTCCGAGGAGCG... Gene: Vapar_4683: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Verminephrobacter eiseniae EF01-2 Site: position = -155 score = 46.24 sequence = GCTCCGAGGAGCGTT... Gene: Veis_0656: Adenosylhomocysteinase (EC 3.3.1.1) |
Adenosylhomocysteinase (EC 3.3.1.1) |
| COG1189 |
Gene: Aave_4059: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase |
Gene: Ajs_0619: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase |
Gene: CtesDRAFT_4459: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase |
Gene: Daci_5918: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase |
Gene: Lcho_0118: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase |
Gene: Mpe_A3287: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase |
Gene: Pnap_0490: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase |
Gene: Bpro_4131: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase |
Gene: Rfer_0653: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase |
Gene: Vapar_4682: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase |
Gene: Veis_0655: S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase |
S-adenosyl-L-methionine-dependent ribosomal RNA methyltransferase |
| metF |
Gene: Aave_4058: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Ajs_0620: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: CtesDRAFT_4460: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Daci_5917: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Lcho_0117: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Mpe_A3288: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Pnap_0491: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Bpro_4130: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Rfer_0654: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Vapar_4681: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Veis_0654: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |