Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator TPP in Comamonadaceae

Properties
Regulator family: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Regulog: TPP - Comamonadaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Acidovorax avenae subsp. citrulli AAC00-1
Aave_0829 thiC -292 54 CGCCTGCTCCGGGGTGCACGTAGAGACTCGAAAGGTTTCTGGGCGTGCTGAGACGGCGGACCTGACCGCCGGAACCGCGAACTTGATCTGGTTAGTACCAGCGTAAGAAGAGCTGCAGCCGGGATTCC
Aave_3068 thiO -170 52.7 GGACGAAACAGGGGTGCCGCGCCCGCCGGGCGCGGCTGAGAAAGACCCTCGGCACCCGATCCAGGTCATGCTGGCGTGGGGAGTTTCGACGGTGGACCGCC
Aave_4517 PF04443 -185 50.5 CCGCAACGCTCCGGGGTGCACGCTTGTGCTGAGATCCACACCCGAGAACTTGAACCGGGTCATTCCGGCGGAAGAAGAGCTGTCACCACCATC
Acidovorax sp. JS42
Ajs_3661 thiC -212 54.8 CGGCCCCGCTCCGGGGTGCACGTAACGGCGTGCTGAGATGGCGGACCTGACCGCCGGAACCGCGAACTTGATCTGGTTCATGCCAGCGTAAGAAGAGCTGCAGTCGGATAG
Ajs_1786 thiO -184 53.3 ACGGACGAAACAGGGGTGTCCCCGCCGCACTAAGAACGTGTTGACGAAAGCGGCAGGCGACTGAGAAATACCCTAAGCACCCGATCCAGGTCATGCTGGCGTGGGGAGTTTCAACAGCATCGGC
Comamonas testosteroni KF-1
CtesDRAFT_2085 PF04443 -163 48.7 GCGCCGCGCTCCGGGGTGCACGCCAGTGCTGAGATCTACACCCGCGAACTTGACCCGGTTCATACCGGCGGAAGAAGAGCTTGCAAGCTGACC
CtesDRAFT_0498 thiC -346 58 ATGCAGCTCCGGGGTGTGCGAAAGCGCTGAGATGCCAGTCACTGTGAAAACAGTACAGGCGAACCCGACGAACTTGATCCGGTTCATACCGGCGGAAGAAGAGCGGGACCCTGACGCAG
CtesDRAFT_0940 cytX -213 32.2 GCAGCAATGCTGGGGGTGTCCTGACTATGACCGGTCAGGGCTGAGAGAGTCCCTTTGAACCTGATTGCGCAAGCGGTGTCTTGACCACCGCTTGCCCGAGATCATCCTCGCGCAGGGAAGCTGTCCAAGGTGTCA
Delftia acidovorans SPH-1
Daci_4530 PF04443 -160 45.7 GCCCTCCGCTCCGGGGTGCACGCCAGTGCTGAGATCCACACCCGAGAACTTGAACCGGGTCATTCCGGCGGAAGAAGAGCTTGCACCCCTGCG
Daci_3293 thiO -79 23.4 TGCCGCGCAGCGCCCCTGCACCCGATCCAGGTCATGCTGGCGTGGGGAGTTTCAATCAATCGGGG
Daci_2313 thiC -390 54.4 GCTCTGCTCCGGGGTGTGCTGATGCACTGAGATGCCAACCGGTCCATGCGCTGCATGGGCCAGGCGGCGAACCCGACGAACTTGATCCGGTTGATACCGGCGGAAGAAGAGCGGGACCCTGAAGCGG
Polaromonas naphthalenivorans CJ2
Pnap_0019 thiC -204 75.9 GCAGCTTGTCGGGGTGCCCGGGATGTTCACATCCGGGGCTGAGATCGCAAAAATGCGAGACCCGCTGAACCTGATCGGGATCATGCCCGCGTAGGAAACAAGGCACTTTGGCTCCG
Polaromonas sp. JS666
Bpro_0037 thiC -182 75.4 AAAGCTTGTCGGGGTGCCAAAGATGATTCATCTGAGGCTGAGATCGCAGATGCGAGACCCGCCGAACCTGATCGGGATCATGCCCGCGTAGGGAACAAGGCACTTGGCTCCGG
Bpro_2332 cytX -171 35.4 GTGCATCCGCTGGGAATGTCGCTGCCTGCCGCAGTGGCGCGCAGCGACTGAGAAAGATCCTTTGAACCCGATTGAAGTCATCCTCGCGCAGGGAAGCATGTGTCCAGCTGC
Rhodoferax ferrireducens DSM 15236
Rfer_3246 thiB -140 54.9 GCGAGTTCACCGGGGGTGTCCGTTGCAAGATGGTCTGAGAAATACCCCACTCACCTGATCTGGATCATGCCAGCGTAGGGAGCGTGAAGGTTGGCCTTC
Rfer_1708 thiC -197 60.8 CGCCCTGCCCGGGGTGCGCTGTGATGGCGCTGAGATGGTCGACCGAACCCGCGAACTTGATCCGGTTCATACCGGCGTAAGAAGCGCCAGACTGCATTATTCCT
Rfer_2463 cytX -187 54.3 CATTTCGCTAGGGGTGTTGCCAGGCTTTTAATGAAAGCGGGTGACTGAGAAAGTCCCTTTGAACCTGACTGAGGTAATCCTCGCGCAGGGAAGCAAGTCTGAACATAGGT
Rfer_2472 thiM -137 60.4 CCGTGCTTGCTAGAGGTGTCGCCTGCGGGTGACTGAGACATACTCTTTGAACCTGATCTGGGTCGTACCAGCGTAGGGAAGCTTCATTTTTTCCTT
Variovorax paradoxus S110
Vapar_4728 thiC -196 60 AGTCCCCGCTCCGGGGTGCACGCATGTGGCGTGCTGAGATGGCAAAGTGCCGACCCGCGAACTTGATCCGGGTCATACCGGCGTAAGAAGAGCTGCACTCCCCGAC
Vapar_2400 cytX -185 48.9 GCACCACCGCTAGGGGTGTCGAACCGGGATCCGTTCCGGGGCTGACTGAGAGAGTCCCTTTGAACCTGACTGAGGTAATCCTCGCGCAGGGAAGCTGGTCCGGCGGCCT
Verminephrobacter eiseniae EF01-2
Veis_1523 thiC -224 54.3 GGCCGCTGCTCCGGGGTGCGCGCAAGCGCTGAGATGCGAGGCGATGCCGAAGAAATTCGGCTGGCCTGGCGAACCCGACGAACTTGATCCGGTTCATACCGGCGGAAGAAGAGCCGACCTCCTTGCC
Methylibium petroleiphilum PM1
Mpe_A1610 thiC -178 56.8 GAGCACTGCTCCGGGGTGCACGCTGTTCTGCGTGCTGAGACGGTTATCCGAACCCGCGAACTTGAACCGGTTAGTACCGGCGGAAGAAGAGCTCTCACTCCAGCG
Mpe_A1495 omp_thi -180 50.7 CGACACCAGCTAGGGGTGTTGACCCGCTCTCGCAAGAGGCCCGGGCTCGACTGAGAAAGTCCCTTCGAACCTGATTGAGGTAATCCTCGCGCAGGGAAGCGATCTTCGGTGTGC
Leptothrix cholodnii SP-6
Lcho_2430 thiC -214 44.3 CTCCCGCTCCGGGGTGCACCCGGGCCGTCAGCGAATGTCCGCAGACGGCTCGTGTGCTGAGATGGCGCCTTCTGGCCCGAACCCGCTGAACTTGACCCGGCTCGTACCGGCGTAAGAAGAGCTCGCACCCAAGGCCC
Lcho_2203 cytX -151 50.8 TTCCTTGCTGGGGGTGCTGGCCTTGTGCCGGCTGAGAAAGTCCCTTCGAACCTGACTGAGGTAATCCTCGCGCAGGGAAGCATGGCGCGGAGCCCCG
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