Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator TPP in Rhodobacterales

Properties
Regulator family: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Regulog: TPP - Rhodobacterales
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Rhodobacter sphaeroides 2.4.1
RSP_1391 thiB -88 63.9 GTCCCACCTCGGGGTGCCCGCAAGGGCTGAGACGCTGCGCGCGAACCCGTTGAACCTGACCCGGTTAGGACCGGCGGAGGGAAGGTGCATGGCTCCTCATC
RSP_0649 thiM -146 54.3 TCCGGAGTGACAGGGGCGTCCGGGACCTTCCCGGGCTGAGAAGCACCCTTTGAACCTGAACCAGGTCATGCTGGCGGAGGAAGTCGCGATGCTGCAGGT
Paracoccus denitrificans PD1222
Pden_3673 tenA -196 52.9 GCGCCACCAAGGGGAGCCCCGGCAAGGGGCTGAGAAACCGCTGGCCTCGATCGTCCCGGCGACGGGCGGCGCGGTGACCCTTTGAACCTGACCCGGATCATGCCGGCGGAGGAATGGGACAGATGCACCTGCC
Pden_2944 thiC -253 51 CCTCACGTCAGGGGAGTCCCGCCTAGGGGACTGAGAGGCTGACAGGGACCGCCCATGGGCGGTTCCGGTGAAGCGACCCTTTGAACCTGACCCAGTTGATGCTGGCGTAGGAAGACCGAAGGGCAGCTTTCC
Pden_0042 thiD -145 82.4 ACTCATACACTTGGGGAGCCTCGCACGAGGCTGAGAGGTGCCGGGCACCGACCCATCGAACCTGATCCGGGTCATGCCGGCGTAGGGAAGGGTAGAGTGAAGCGG
Jannaschia sp. CCS1
Jann_0330 thiB -160 52.9 TAGCGGTACCTCGGGGGGGCTCGCGCATCTGACGATACGCTGGCCTGAGATTGCGAAAGCTGACCCGTTGAACCTGAACCGGTTAATACCGGCGGAGGGAAGGGTATCGCGGCCATCG
Rhodobacterales bacterium HTCC2654
RB2654_14515 thiB -143 58.8 CTGCCTCACCTCGGGGTGCCCGTGCGACGCAAGTCGTCCGGCTGAGATGCGAAAGCGAACCCGTTGAACCTGAACCGGCTAGCACCGGCGGAGGGAAGGTCAGGACCATCACA
RB2654_21928 ykoF -100 68.1 CACATAACCAGGGGTGCTCCTTCTCGGGGCTGAGATGCGCGATCCGGCGCGAACCCTTTCACAGCTGATCTGGATAATACCAGCGGAGCGAGGTGCTAGCATGTTCATAG
Oceanicola granulosus HTCC2516
OG2516_10591 thiB -125 67.4 GCCCCACCTCGGGGTGCCCGTCATGGGCTGAGATGCGCGACTGCGCGGACCCGTTGAACCTGAACCGGCTCACACCGGCGGAGGGAAGGTCGCGAGATTCTCCTG
OG2516_13249 ykoF -99 65.6 CGAACATAACCGGGGGTGCTCCTTGCGGGGCTGAGATGCGCGACTGCGCGAACCCTTTCAAAGCTGATCTGGATAATGCCAGCGGAGCGAGGTGCTACCATGTTCAT
Loktanella vestfoldensis SKA53
SKA53_12158 thiB -134 62.9 GCCCCACCTCGGGGTGCCTTTACTGGCTGAGATGCGCAAGCAGACCCGTTGAACCTGAACCGGTTAGGACCGGCGGAGGGAAGGTATGGCAATTCCGCTA
Oceanicola batsensis HTCC2597
OB2597_18032 PF00293 -152 63.7 GCCCCTCACCTAGGGGTGTCCCGCCAAGGGGCTGAGATATCGCTGGCAGATGCAGCGCGGTGACCCTTTGAACCTGATCCGGATCATGCCGGCGAAGGGACAGGATCGCGCAGACCTC
OB2597_02767 thiD -172 70.8 GCAGAATCCGTTGGGGTGCCCGTCCGGGCTGAGAGGCGCAAGCCAACCCATCGAACCTGATCCGGGCAATACCGGCGGAGGGAACGGAGCACGATCTGGC
OB2597_18012 thiC -260 67.3 GCACTCACCCGGGGGGTCTCGACAAGAGGCTGAGATACTGCTGGCATCCGTGCAGCGCAGTGACCCGATGAACCTGATCCAGTTCATACTGGCGTAGGGATGGTGCACTGGCCGCGCGGG
OB2597_14229 thiB -147 63.7 GCGCCACCTCGGGGTGCCCGCAAGGGCTGAGATGCGATCCTGCGAACCCGTTGAACCTGAACCGGTTAACACCGGCGGAGGGAAGGTCGCGCGGCCTGTCGC
Roseovarius nubinhibens ISM
ISM_10621 thiC -223 52.2 ATTGCACGCAGGGGGGTCCCGCCCAGGGGACTGAGAGGCTGACAGTGCAGATGCACGGTGACGCGACCCTTTGAACCTGACCCAGTTGATACTGGCGTAGGAAGCTAGGTGCGCTCACTGGC
ISM_10586 thiB -150 56 TGGAGACCTCGGGGTGTTCCTGTGGGCCGCTGGCCCGTGCGAACTGAGACGCTGTGCGAACCCGTTGAACCTGAACCGGCTAGAACCGGCGGAGGGAAGGATTGCACGACATTGCC
Roseovarius sp. 217
ROS217_02430 thiC -236 56.6 AAGAGGGACGCAGGGGAGTCCCGACCAAGGGACTGAGAGGCGGCTGAGAGCGATTGCTCAGTGTCGCGACCCTTTGAACCTGACCCAGTTGATACTGGCGTAGGAAGCTAGGACACGTGGTTT
ROS217_09305 thiD -148 80.7 GCAACATCCGTTGGGGTGCCCGTTTTCGGGCTGAGAGACATTACGTCAACCCATCGAACCTGATCCGGTTGATACCGGCGTAGGGAACGGACATCAGCACGCA
ROS217_22402 thiZ -150 61.9 GATATCCGTTGGGGTGCCCGCTTGGGGCTGAGAGGTGAAGAGCCAACCCATCGAACCTGATCCGGCTTGCACCGGCGGAGGGAACGGAGACCGCGCAGCCTT
Sulfitobacter sp. EE-36
EE36_13848 thiD -169 79.6 CATCTATCCGTCGGGGTGCCCTAGGCGGCTGAGAGGTGCGTGCACCGACCCGTCGAACCTGATCCGGGCAATACCGGCGTAGGGAACGGGTATCTTTGTGCA
EE36_07818 thiB -135 81.1 ATAAGATACCTCGGGGGGCCTGACAGGCTGAGATGTGCGCGCACGGACCCGTTGAACCTGAACCGGTTAACACCGGCGGAGGGAAGGTCTGGATACACCTC
Silicibacter TM1040
TM1040_3649 thiD -146 79.4 GCGAACCGTTGGGGTGCCTCCTGGAGGCTGAGAGGCGTGCATGCGCTAACCCATCGAACCTGATCCGGGCAATACCGGCGTAGGGAACGGTCTACTGATGTGCGG
TM1040_2054 thiC -242 48.2 GCAGCACGCAGGGGAGTCCCAACCCAAGGGGACTGAGAGGCGGACGGGGAGTGATCCCGGTGACGCGACCCTTTGAACCTGACCCAGTTGATACTGGCGGAGGAAGCTAGGACAGTCGCGCACC
TM1040_2818 thiB -158 73.3 TCGCCCCACCTCGGGGTGCGCGAGCGGTCGTGCTGAGATGCCTATGGGCGAACCCGCTGAACCTGAACCGGATTATACCGGCGTAGGGAAGGTTTGGTATGACAAG
Silicibacter pomeroyi DSS-3
SPO0045 thiD -148 78.2 GCCAACCGTTGGGGTGCCCTGTGTGGGGCTGAGAGGCGCGGGTGCGTCAACCCATCGAACCTGATCCGGGCAATACCGGCGTAGGGAACGGTCTATCGCTATCGGA
Roseobacter sp. MED193
MED193_07728 thiC -246 49.9 TAGCCTACGCAGGGGAGTCCCACCGAGGGGACTGAGAGGCTGACAGGGCAGAGCAATCTGACCGGCGACGCGACCCTTAGAACCTGACCCAGTTGACACTGGCGTAGGAAGCTAGGACGCATTGCTTGC
MED193_14432 thiB -128 67 GAGATACCTCGGGGTGCCAGGACGACATTGGCTGAGAGTAAACCCGTTGAACCTGAACCGGCTAAAACCGGCGGAGGGAAGGTTTCGGAGTTCCTCCA
Hyphomonas neptunium ATCC 15444
HNE_3337 PF08818 -93 63.5 GCATATCCGAGGGGTGTCCGGCATGGGGCCGGGCTGAGAGTTACCCTTTGAACCTGATCCGGGTCATGCCGGCGCGAGGGACGGAGAATAACTATGGCCC
Oceanicaulis alexandrii HTCC2633
OA2633_07209 PF04237 -101 50 CGTCAGTTCCAAGGGGTGTCCCGTGCGGTGGTCGTACGGGGCTGAGACGTCACCCTCAGGACCGGATCCGGGTCATGCCGGCGGCGGGATGGAGCAGCGCGATGAC
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