Regulon of LexA in Bacillus pumilus SAFR-032
| Regulator type: | Transcription factor |
| TF locus tag: | BPUM_1686 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Bacillales |
| Statistics of regulated genes: | |
| - Genes | 36 |
| - Operons | 19 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -29
Score: 4.9 Sequence: CAGAACATACGTTCTA
Locus tag: BPUM_2102
Name: yqjW Funciton: DNA polymerase IV (EC 2.7.7.7) |
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yqjW
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DNA polymerase IV (EC 2.7.7.7)
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Position: -169
Score: 4 Sequence: AAGAACGCATATTCGT
Locus tag: BPUM_2062
Name: ypuD Funciton: Hypothetical protein |
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ypuD
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Hypothetical protein
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Position: -431
Score: 5.1 Sequence: ACAAACATAGGTTCGA
Position: -401
Score: 4.4 Sequence: AGAAACGTTTGTTCGT
Position: -362
Score: 4 Sequence: ACGAACACACATTCTA
Locus tag: BPUM_1688
Name: yneB Funciton: Site-specific recombinase, DNA invertase
Locus tag: BPUM_1689
Name: ynzC Funciton: Hypothetical protein
Locus tag: BPUM_1690
Name: tkt Funciton: Transketolase (EC 2.2.1.1)
Locus tag: BPUM_1691
Name: yneE Funciton: Hypothetical protein
Locus tag: BPUM_1692
Name: yneF Funciton: Hypothetical protein |
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yneB
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Site-specific recombinase, DNA invertase
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ynzC
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Hypothetical protein
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tkt
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Transketolase (EC 2.2.1.1)
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yneE
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Hypothetical protein
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yneF
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Hypothetical protein
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Position: -34
Score: 4.5 Sequence: AAGAACGTGTGTTCTA
Locus tag: BPUM_0989
Name: yhjD Funciton: Hypothetical protein |
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yhjD
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Hypothetical protein
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Position: -30
Score: 5.2 Sequence: TAGAACATACGTTTGT
Locus tag: BPUM_1157
Name: xkdA Funciton: Phage-like element PBSX protein xkdA |
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xkdA
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Phage-like element PBSX protein xkdA
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Position: -62
Score: 5.2 Sequence: TAAAACAAATGTTCGT
Locus tag: BPUM_2506
Name: uvrC Funciton: Excinuclease ABC subunit C |
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uvrC
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Excinuclease ABC subunit C
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Position: -82
Score: 4.9 Sequence: CCGAACTTTAGTTCGT
Locus tag: BPUM_3148
Name: uvrB Funciton: Excinuclease ABC subunit B
Locus tag: BPUM_3147
Name: uvrA Funciton: Excinuclease ABC subunit A |
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uvrB
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Excinuclease ABC subunit B
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uvrA
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Excinuclease ABC subunit A
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Position: -145
Score: 4.4 Sequence: CAGAACGATTGTTCTT
Locus tag: BPUM_2304
Name: sda Funciton: Sporulation inhibitor sda |
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sda
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Sporulation inhibitor sda
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Position: -88
Score: 5.2 Sequence: TCGAATATGTGTTCGT
Locus tag: BPUM_1598
Name: recA Funciton: Recombination protein A |
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recA
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Recombination protein A
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Position: -246
Score: 4.8 Sequence: TAGAACATTTGTTCTG
Locus tag: BPUM_1709
Name: parE Funciton: Topoisomerase IV subunit B (EC 5.99.1.-)
Locus tag: BPUM_1710
Name: parC Funciton: Topoisomerase IV subunit A (EC 5.99.1.-) |
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parE
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Topoisomerase IV subunit B (EC 5.99.1.-)
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parC
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Topoisomerase IV subunit A (EC 5.99.1.-)
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Position: -142
Score: 4.6 Sequence: TAGAATGTGTGTTCGT
Position: -103
Score: 4.4 Sequence: ACGAACAAACGTTTCT
Position: -73
Score: 5.1 Sequence: TCGAACCTATGTTTGT
Locus tag: BPUM_1686
Name: lexA Funciton: SOS-response transcriptional repressor |
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lexA
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SOS-response transcriptional repressor
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Position: -277
Score: 4.4 Sequence: AGGAATATTCGTTCGC
Position: -241
Score: 3.9 Sequence: ACGAATAAGGATTCTT
Locus tag: BPUM_2010
Name: hupA Funciton: DNA-binding protein HU 1 |
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hupA
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DNA-binding protein HU 1
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Position: -73
Score: 4.5 Sequence: AAGAACATTTGTTTCT
Locus tag: BPUM_2566
Name: dnaE Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
Locus tag: BPUM_2565
Name: ytsJ Funciton: NADP-dependent malic enzyme (EC 1.1.1.40) |
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dnaE
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DNA polymerase III alpha subunit (EC 2.7.7.7)
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ytsJ
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NADP-dependent malic enzyme (EC 1.1.1.40)
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Position: -75
Score: 4.4 Sequence: CAGAACAAACGTTCCT
Position: -46
Score: 4.8 Sequence: AAGAACGTTTGTTCGA
Locus tag: BPUM_2882
Name: BH1502 Funciton: Hypothetical protein |
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BH1502
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Hypothetical protein
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Position: -80
Score: 4.7 Sequence: AGAAACAAATGTTCTT
Locus tag: BPUM_2567
Name: ytrH Funciton: Sporulation membrane protein
Locus tag: BPUM_2568
Name: ytrI Funciton: Sporulation membrane protein |
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ytrH
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Sporulation membrane protein
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ytrI
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Sporulation membrane protein
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Position: -32
Score: 5.2 Sequence: TAGAACATAAGTTCGA
Locus tag: BPUM_0625
Name: pcrA Funciton: ATP-dependent DNA helicase
Locus tag: BPUM_0626
Name: ligA Funciton: NAD-dependent DNA ligase
Locus tag: BPUM_0627
Name: yerH Funciton: Putative lipoprotein |
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pcrA
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ATP-dependent DNA helicase
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ligA
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NAD-dependent DNA ligase
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yerH
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Putative lipoprotein
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Position: -71
Score: 3.8 Sequence: TAGAACGTGCATTCGC
Locus tag: BPUM_0934
Name: yhaO Funciton: DNA repair exonuclease family protein YhaO
Locus tag: BPUM_0935
Name: yhaN Funciton: DNA double-strand break repair rad50 ATPase
Locus tag: BPUM_0936
Name: yhaM Funciton: 3'-5' exoribonuclease yhaM (EC 3.1.-.-)
Locus tag: BPUM_0937
Name: yhaL Funciton: Conserved hypothetical protein |
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yhaO
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DNA repair exonuclease family protein YhaO
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yhaN
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DNA double-strand break repair rad50 ATPase
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yhaM
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3'-5' exoribonuclease yhaM (EC 3.1.-.-)
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yhaL
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Conserved hypothetical protein
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Position: -115
Score: 4.2 Sequence: TCGAAGAGAGGTTCGT
Locus tag: BPUM_0993
Name: addB Funciton: ATP-dependent deoxyribonuclease (subunit B)
Locus tag: BPUM_0994
Name: addA Funciton: ATP-dependent deoxyribonuclease (subunit A)
Locus tag: BPUM_0995
Name: sbcD Funciton: DNA repair exonuclease subunit D
Locus tag: BPUM_0996
Name: sbcC Funciton: DNA repair exonuclease subunit C
Locus tag: BPUM_0997
Name: yisB Funciton: Putative nuclease component |
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addB
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ATP-dependent deoxyribonuclease (subunit B)
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addA
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ATP-dependent deoxyribonuclease (subunit A)
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sbcD
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DNA repair exonuclease subunit D
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sbcC
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DNA repair exonuclease subunit C
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yisB
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Putative nuclease component
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Position: -128
Score: 4.6 Sequence: TAGAACACACGTTCTT
Locus tag: BPUM_0990
Name: yhjE Funciton: Alkaline phosphatase like protein |
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yhjE
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Alkaline phosphatase like protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |