Regulon of NanR in Bifidobacterium longum subsp. infantis ATCC 15697
| Regulator type: | Transcription factor |
| TF locus tag: | Blon_0642 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Sialic acid utilization |
| Effector: | Sialic acid |
| Regulog: | NanR - Bifidobacteriaceae |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - GntR/Others
- By effector - Sialic acid
- By pathway - Sialic acid utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -200
Score: 6.5 Sequence: ATAAGACGTCTGACGTCTTAT
Position: -102
Score: 5 Sequence: ATCAGACGTCTGATGTTTCCC
Locus tag: Blon_0646
Name: nanH Funciton: Sialidase (EC 3.2.1.18) |
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nanH
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Sialidase (EC 3.2.1.18)
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Position: -73
Score: 5.2 Sequence: GATATACATCAGATGTCTGAT
Position: -66
Score: 5.4 Sequence: ATCAGATGTCTGATGTATAAT
Locus tag: Blon_0643
Name: SSF51658 Funciton: Xylose isomerase-like, TIM barrel domain
Locus tag: Blon_0644
Name: nanK Funciton: N-acetylmannosamine kinase (EC 2.7.1.60)
Locus tag: Blon_0645
Name: nanE Funciton: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9) |
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SSF51658
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Xylose isomerase-like, TIM barrel domain
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nanK
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N-acetylmannosamine kinase (EC 2.7.1.60)
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nanE
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N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
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Position: -250
Score: 4.9 Sequence: GGGAAACATCAGACGTCTGAT
Position: -152
Score: 6.6 Sequence: ATAAGACGTCAGACGTCTTAT
Locus tag: Blon_0647
Name: nanB Funciton: Predicted sialic acid ABC transporter, solute binding component
Locus tag: Blon_0648
Name: nanC Funciton: Predicted sialic acid ABC transporter, permease component
Locus tag: Blon_0649
Name: nanD Funciton: Predicted sialic acid ABC transporter, permease component and ATP-binding component
Locus tag: Blon_0650
Name: nanF Funciton: Predicted sialic acid ABC transporter, ATP binding component
Locus tag: Blon_0651
Name: nanA Funciton: N-acetylneuraminate lyase (EC 2.5.1.56) |
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nanB
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Predicted sialic acid ABC transporter, solute binding component
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nanC
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Predicted sialic acid ABC transporter, permease component
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nanD
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Predicted sialic acid ABC transporter, permease component and ATP-binding component
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nanF
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Predicted sialic acid ABC transporter, ATP binding component
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nanA
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N-acetylneuraminate lyase (EC 2.5.1.56)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |