Regulon of Crp in Gardnerella vaginalis 409-05
| Regulator type: | Transcription factor |
| TF locus tag: | HMPREF0424_0303 |
| Regulator family: | CRP |
| Regulation mode: | |
| Biological process: | Tricarboxylic acid cycle; Energy metabolism |
| Effector: | |
| Regulog: | Crp - Bifidobacteriaceae |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - CRP
- By pathway - Tricarboxylic acid cycle
- By pathway - Energy metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -215
Score: 4.8 Sequence: AAATGTAATTTATTTCACAAAA
Locus tag: HMPREF0424_0180
Name: gnd Funciton: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
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gnd
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6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
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Position: -232
Score: 5 Sequence: TTTTGTGAAATAAATTACATTT
Locus tag: HMPREF0424_0179
Name: nrdH Funciton: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
Locus tag: HMPREF0424_0178
Name: nrdI Funciton: Ribonucleotide reduction protein NrdI
Locus tag: HMPREF0424_0177
Name: nrdE Funciton: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
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nrdH
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Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
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nrdI
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Ribonucleotide reduction protein NrdI
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nrdE
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Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
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Position: -119
Score: 5.3 Sequence: AAATGTGATATATTTCACTAGA
Locus tag: HMPREF0424_0886
Name: pflB Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: HMPREF0424_0885
Name: pflA Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
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pflB
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Pyruvate formate-lyase (EC 2.3.1.54)
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pflA
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Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
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Position: -96
Score: 5.8 Sequence: AATTGTGACTTGTATCACATAT
Locus tag: HMPREF0424_0254
Name: adh Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
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adh
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Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |