Regulon of RbsR1 in Gardnerella vaginalis 409-05
| Regulator type: | Transcription factor |
| TF locus tag: | HMPREF0424_1339 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Ribose utilization |
| Effector: | Ribose |
| Regulog: | RbsR1 - Bifidobacteriaceae |
| Statistics of regulated genes: | |
| - Genes | 6 |
| - Operons | 1 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - LacI
- By effector - Ribose
- By pathway - Ribose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -281
Score: 7.1 Sequence: TTGCGGTAACGTTACCGCAT
Position: -237
Score: 5.1 Sequence: TTGTGGGAACGTTATCTCAA
Locus tag: HMPREF0424_1339
Name: rbsR1 Funciton: Transcriptional repressor of ribose utilization, LacI family
Locus tag: HMPREF0424_1338
Name: rbsA Funciton: Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
Locus tag: HMPREF0424_1337
Name: rbsC Funciton: Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Locus tag: HMPREF0424_1336
Name: rbsB Funciton: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Locus tag: HMPREF0424_1335
Name: rbsD Funciton: D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
Locus tag: HMPREF0424_1334
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15) |
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rbsR1
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Transcriptional repressor of ribose utilization, LacI family
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rbsA
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Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)
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rbsC
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Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
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rbsB
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Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
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rbsD
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D-ribose pyranase (D-ribose mutarotase) (EC 5.5.1.n1)
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rbsK
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Ribokinase (EC 2.7.1.15)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |