Regulon of NifA in Zymomonas mobilis subsp. mobilis ZM4
| Regulator type: | Transcription factor |
| TF locus tag: | ZMO1816 |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Nitrogen fixation |
| Effector: | |
| Regulog: | NifA - Sphingomonadales |
| Statistics of regulated genes: | |
| - Genes | 24 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingomonadales
- By trascription factor - NifA
- By TF family - Fis
- By pathway - Nitrogen fixation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -427
Score: 4 Sequence: TGTCAGGCTGCATCCA
Position: -145
Score: 3.8 Sequence: TTTACCGATACCGACA
Position: -125
Score: 3.5 Sequence: TGTAAGAGTTAAGACA
Locus tag: ZMO1817
Name: nifB Funciton: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
Locus tag: ZMO1818
Name: fdxN Funciton: 4Fe-4S ferredoxin, nitrogenase-associated |
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nifB
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Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
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fdxN
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4Fe-4S ferredoxin, nitrogenase-associated
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Position: -179
Score: 4.6 Sequence: TGTCGCGCTTCGAACA
Locus tag: ZMO1823
Name: nifH Funciton: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
Locus tag: ZMO1824
Name: nifD Funciton: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
Locus tag: ZMO1825
Name: nifK Funciton: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
Locus tag: ZMO1826
Name: nifE Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
Locus tag: ZMO1827
Name: nifN Funciton: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
Locus tag: ZMO1828
Name: nifX Funciton: Nitrogenase FeMo-cofactor carrier protein NifX
Locus tag: ZMO1829
Name: PF03270 Funciton: Conserved hypothetical protein, probably related to nitrogen fixation protein
Locus tag: ZMO2028
Name: fdxB Funciton: Nitrogenase specific ferredoxin III protein FdxB
Locus tag: ZMO1831
Name: nifQ Funciton: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
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nifH
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Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
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nifD
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Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
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nifK
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Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
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nifE
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Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
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nifN
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Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
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nifX
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Nitrogenase FeMo-cofactor carrier protein NifX
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PF03270
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Conserved hypothetical protein, probably related to nitrogen fixation protein
|
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fdxB
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Nitrogenase specific ferredoxin III protein FdxB
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nifQ
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Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ
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Position: -143
Score: 4.2 Sequence: TGTTCAAAAGCCTACA
Locus tag: ZMO1832
Name: iscN Funciton: Fe-S cofactor nitrogenase synthesis protein IscN
Locus tag: ZMO1833
Name: nifU Funciton: Iron-sulfur cluster assembly scaffold protein NifU
Locus tag: ZMO1834
Name: nifS Funciton: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
Locus tag: ZMO1835
Name: nifV Funciton: Homocitrate synthase (EC 2.3.3.14)
Locus tag: ZMO1836
Name: nifW Funciton: nitrogen fixation protein NifW
Locus tag: ZMO1837
Name: modD Funciton: Molybdenum transport system protein ModD |
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iscN
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Fe-S cofactor nitrogenase synthesis protein IscN
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nifU
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Iron-sulfur cluster assembly scaffold protein NifU
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nifS
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Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
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nifV
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Homocitrate synthase (EC 2.3.3.14)
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nifW
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nitrogen fixation protein NifW
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modD
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Molybdenum transport system protein ModD
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Position: -213
Score: 4.4 Sequence: TGTCACTTTTGCGACA
Locus tag: ZMO1814
Name: rnfA Funciton: Electron transport complex protein RnfA
Locus tag: ZMO1813
Name: rnfB Funciton: Electron transport complex protein RnfB
Locus tag: ZMO1812
Name: rnfC Funciton: Electron transport complex protein RnfC
Locus tag: ZMO1811
Name: rnfD Funciton: Electron transport complex protein RnfD
Locus tag: ZMO1810
Name: rnfG Funciton: Electron transport complex protein RnfG
Locus tag: ZMO1809
Name: rnfE Funciton: Electron transport complex protein RnfE
Locus tag: ZMO1808
Name: rnfH Funciton: Electron transport complex protein RnfH |
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rnfA
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Electron transport complex protein RnfA
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rnfB
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Electron transport complex protein RnfB
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rnfC
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Electron transport complex protein RnfC
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rnfD
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Electron transport complex protein RnfD
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rnfG
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Electron transport complex protein RnfG
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rnfE
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Electron transport complex protein RnfE
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rnfH
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Electron transport complex protein RnfH
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |