Regulog NifA - Sphingomonadales

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:	activator
Biological process:	Nitrogen fixation
Effector:
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Sphingomonadales
By trascription factor - NifA
By TF family - Fis
By pathway - Nitrogen fixation

Statistics of regulated genes
Genome	Genes	Operons
Erythrobacter litoralis HTCC2594
Erythrobacter sp. NAP1
Novosphingobium aromaticivorans DSM 12444
Sphingobium japonicum UT26S
Sphingomonas wittichii RW1
Sphingopyxis alaskensis RB2256
Zymomonas mobilis subsp. mobilis ZM4	24	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
rnfA	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	* Zymomonas mobilis subsp. mobilis ZM4 Site: position = -213 score = 4.39605 sequence = TGTCACTTTTGCGACA Gene: ZMO1814: Electron transport complex protein RnfA	Electron transport complex protein RnfA
rnfB	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1813: Electron transport complex protein RnfB	Electron transport complex protein RnfB
rnfC	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1812: Electron transport complex protein RnfC	Electron transport complex protein RnfC
rnfD	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1811: Electron transport complex protein RnfD	Electron transport complex protein RnfD
rnfG	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1810: Electron transport complex protein RnfG	Electron transport complex protein RnfG
rnfE	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1809: Electron transport complex protein RnfE	Electron transport complex protein RnfE
rnfH	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1808: Electron transport complex protein RnfH	Electron transport complex protein RnfH

CRON 2.
nifB	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	* Zymomonas mobilis subsp. mobilis ZM4 Site: position = -145 score = 3.80503 sequence = TTTACCGATACCGACA Site: position = -427 score = 3.95566 sequence = TGTCAGGCTGCATCCA Site: position = -125 score = 3.48519 sequence = TGTAAGAGTTAAGACA Gene: ZMO1817: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB	Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB
fdxN	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1818: 4Fe-4S ferredoxin, nitrogenase-associated	4Fe-4S ferredoxin, nitrogenase-associated

CRON 3.
nifH	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	* Zymomonas mobilis subsp. mobilis ZM4 Site: position = -179 score = 4.64996 sequence = TGTCGCGCTTCGAACA Gene: ZMO1823: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH	Nitrogenase (molybdenum-iron) reductase and maturation protein NifH
nifD	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1824: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)	Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1)
nifK	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1825: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)	Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1)
nifE	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1826: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE	Nitrogenase FeMo-cofactor scaffold and assembly protein NifE
nifN	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1827: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN	Nitrogenase FeMo-cofactor scaffold and assembly protein NifN
nifX	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1828: Nitrogenase FeMo-cofactor carrier protein NifX	Nitrogenase FeMo-cofactor carrier protein NifX
PF03270	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1829: Conserved hypothetical protein, probably related to nitrogen fixation protein	Conserved hypothetical protein, probably related to nitrogen fixation protein
fdxB	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO2028: Nitrogenase specific ferredoxin III protein FdxB	Nitrogenase specific ferredoxin III protein FdxB
nifQ	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1831: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ	Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ

CRON 4.
iscN	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	* Zymomonas mobilis subsp. mobilis ZM4 Site: position = -143 score = 4.15681 sequence = TGTTCAAAAGCCTACA Gene: ZMO1832: Fe-S cofactor nitrogenase synthesis protein IscN	Fe-S cofactor nitrogenase synthesis protein IscN
nifU	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1833: Iron-sulfur cluster assembly scaffold protein NifU	Iron-sulfur cluster assembly scaffold protein NifU
nifS	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1834: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily	Cysteine desulfurase (EC 2.8.1.7), NifS subfamily
nifV	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1835: Homocitrate synthase (EC 2.3.3.14)	Homocitrate synthase (EC 2.3.3.14)
nifW	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1836: nitrogen fixation protein NifW	nitrogen fixation protein NifW
modD	Erythrobacter litoralis HTCC2594	Erythrobacter sp. NAP1	Novosphingobium aromaticivorans DSM 12444	Sphingobium japonicum UT26S	Sphingomonas wittichii RW1	Sphingopyxis alaskensis RB2256	Zymomonas mobilis subsp. mobilis ZM4 Gene: ZMO1837: Molybdenum transport system protein ModD	Molybdenum transport system protein ModD

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NifA - Sphingomonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --