Regulog NifA - Sphingomonadales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator |
| Biological process: | Nitrogen fixation |
| Effector: | |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingomonadales
- By trascription factor - NifA
- By TF family - Fis
- By pathway - Nitrogen fixation
| Genome | Genes | Operons |
|---|---|---|
| Erythrobacter litoralis HTCC2594 | ||
| Erythrobacter sp. NAP1 | ||
| Novosphingobium aromaticivorans DSM 12444 | ||
| Sphingobium japonicum UT26S | ||
| Sphingomonas wittichii RW1 | ||
| Sphingopyxis alaskensis RB2256 | ||
| Zymomonas mobilis subsp. mobilis ZM4 | 24 | 4 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| rnfA |
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Zymomonas mobilis subsp. mobilis ZM4 Site: position = -213 score = 4.39605 sequence = TGTCACTTTTGCGACA Gene: ZMO1814: Electron transport complex protein RnfA |
Electron transport complex protein RnfA |
| rnfB |
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Gene: ZMO1813: Electron transport complex protein RnfB |
Electron transport complex protein RnfB |
| rnfC |
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Gene: ZMO1812: Electron transport complex protein RnfC |
Electron transport complex protein RnfC |
| rnfD |
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Gene: ZMO1811: Electron transport complex protein RnfD |
Electron transport complex protein RnfD |
| rnfG |
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Gene: ZMO1810: Electron transport complex protein RnfG |
Electron transport complex protein RnfG |
| rnfE |
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Gene: ZMO1809: Electron transport complex protein RnfE |
Electron transport complex protein RnfE |
| rnfH |
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Gene: ZMO1808: Electron transport complex protein RnfH |
Electron transport complex protein RnfH |
| CRON 2. | ||||||||
| nifB |
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Zymomonas mobilis subsp. mobilis ZM4 Site: position = -145 score = 3.80503 sequence = TTTACCGATACCGACA Site: position = -427 score = 3.95566 sequence = TGTCAGGCTGCATCCA Site: position = -125 score = 3.48519 sequence = TGTAAGAGTTAAGACA Gene: ZMO1817: Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB |
| fdxN |
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Gene: ZMO1818: 4Fe-4S ferredoxin, nitrogenase-associated |
4Fe-4S ferredoxin, nitrogenase-associated |
| CRON 3. | ||||||||
| nifH |
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Zymomonas mobilis subsp. mobilis ZM4 Site: position = -179 score = 4.64996 sequence = TGTCGCGCTTCGAACA Gene: ZMO1823: Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH |
| nifD |
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Gene: ZMO1824: Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) |
| nifK |
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Gene: ZMO1825: Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) |
| nifE |
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Gene: ZMO1826: Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE |
| nifN |
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Gene: ZMO1827: Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN |
| nifX |
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Gene: ZMO1828: Nitrogenase FeMo-cofactor carrier protein NifX |
Nitrogenase FeMo-cofactor carrier protein NifX |
| PF03270 |
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Gene: ZMO1829: Conserved hypothetical protein, probably related to nitrogen fixation protein |
Conserved hypothetical protein, probably related to nitrogen fixation protein |
| fdxB |
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Gene: ZMO2028: Nitrogenase specific ferredoxin III protein FdxB |
Nitrogenase specific ferredoxin III protein FdxB |
| nifQ |
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Gene: ZMO1831: Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ |
| CRON 4. | ||||||||
| iscN |
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Zymomonas mobilis subsp. mobilis ZM4 Site: position = -143 score = 4.15681 sequence = TGTTCAAAAGCCTACA Gene: ZMO1832: Fe-S cofactor nitrogenase synthesis protein IscN |
Fe-S cofactor nitrogenase synthesis protein IscN |
| nifU |
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Gene: ZMO1833: Iron-sulfur cluster assembly scaffold protein NifU |
Iron-sulfur cluster assembly scaffold protein NifU |
| nifS |
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Gene: ZMO1834: Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily |
| nifV |
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Gene: ZMO1835: Homocitrate synthase (EC 2.3.3.14) |
Homocitrate synthase (EC 2.3.3.14) |
| nifW |
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Gene: ZMO1836: nitrogen fixation protein NifW |
nitrogen fixation protein NifW |
| modD |
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Gene: ZMO1837: Molybdenum transport system protein ModD |
Molybdenum transport system protein ModD |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |